Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31251 * 119.79838 * 2 1 4 4 C 1.33093 * 121.71290 * 180.02562 * 3 2 1 5 5 C 1.47741 * 119.46409 * 179.97438 * 4 3 2 6 6 C 1.39792 * 120.08158 * 224.31436 * 5 4 3 7 7 C 1.37633 * 119.94007 * 179.97438 * 6 5 4 8 8 C 1.39245 * 120.10462 * 359.97438 * 7 6 5 9 9 N 1.39258 * 119.92234 * 180.02562 * 8 7 6 10 10 C 1.39123 * 120.15363 * 359.97438 * 8 7 6 11 11 C 1.37838 * 120.05625 * 359.78054 * 10 8 7 12 12 Cl 1.73601 * 120.04948 * 180.25320 * 11 10 8 13 13 C 1.40030 * 121.07945 * 0.02562 * 4 3 2 14 14 C 1.36523 * 119.46453 * 359.97438 * 13 4 3 15 15 C 1.40958 * 119.79385 * 180.02562 * 2 1 3 16 16 C 1.41012 * 120.54552 * 0.25414 * 15 2 1 17 17 H 1.07997 * 120.00112 * 334.50328 * 16 15 2 18 18 C 1.39974 * 119.99971 * 154.50111 * 16 15 2 19 19 N 1.30820 * 120.00112 * 347.47737 * 18 16 15 20 20 Si 1.86803 * 119.99817 * 167.47600 * 18 16 15 21 21 H 1.48506 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46858 * 120.00152 * 20 18 16 23 23 H 1.48500 * 109.47163 * 240.00004 * 20 18 16 24 24 H 1.08993 * 109.47330 * 269.98469 * 1 2 3 25 25 H 1.09007 * 109.46400 * 29.98370 * 1 2 3 26 26 H 1.08999 * 109.47115 * 149.97764 * 1 2 3 27 27 H 1.07997 * 120.02581 * 359.97438 * 6 5 4 28 28 H 1.07998 * 119.94519 * 179.97438 * 7 6 5 29 29 H 0.97000 * 120.00186 * 0.02562 * 9 8 7 30 30 H 0.97009 * 119.99731 * 180.02562 * 9 8 7 31 31 H 1.07998 * 119.97347 * 180.02562 * 10 8 7 32 32 H 1.08001 * 120.26549 * 180.02562 * 13 4 3 33 33 H 1.07991 * 120.78779 * 179.97438 * 14 13 4 34 34 H 0.96997 * 120.00078 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4895 1.1834 -0.0005 5 6 4.1728 2.4933 -0.0011 6 6 5.2639 2.7140 -0.8466 7 6 5.8980 3.9356 -0.8451 8 6 5.4540 4.9520 -0.0032 9 7 6.0981 6.1867 -0.0051 10 6 4.3678 4.7371 0.8392 11 6 3.7249 3.5179 0.8393 12 17 2.3654 3.2522 1.8858 13 6 4.2520 0.0090 -0.0016 14 6 3.6207 -1.2016 -0.0016 15 6 2.2074 -1.2233 -0.0005 16 6 1.5096 -2.4486 -0.0065 17 1 0.5073 -2.5012 0.3921 18 6 2.1161 -3.5968 -0.5290 19 7 3.2170 -3.4946 -1.2282 20 14 1.3533 -5.2752 -0.2280 21 1 0.1203 -5.1200 0.5850 22 1 1.0117 -5.9042 -1.5292 23 1 2.3210 -6.1356 0.4988 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3632 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 5.6090 1.9267 -1.5003 28 1 6.7413 4.1061 -1.4980 29 1 6.8548 6.3380 -0.5928 30 1 5.7899 6.8954 0.5812 31 1 4.0257 5.5276 1.4907 32 1 5.3308 0.0604 -0.0016 33 1 4.1877 -2.1207 -0.0029 34 1 3.6371 -4.2902 -1.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245506568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = 16.312070 kcal Electronic energy + Delta-G solvation = -19485.678994 eV Core-core repulsion = 16407.303494 eV Total energy + Delta-G solvation = -3078.375500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69293 -39.70397 -37.24168 -36.17395 -35.24518 -33.34619 -32.42109 -31.59702 -29.67198 -28.65924 -26.35265 -23.86159 -23.74991 -22.23447 -21.70219 -19.19847 -18.28715 -17.81181 -17.39952 -16.92152 -16.35759 -15.56794 -15.35846 -15.21165 -14.71747 -14.60539 -14.43443 -14.35308 -13.83528 -13.47638 -13.28781 -12.98371 -12.86064 -12.74100 -12.62781 -12.52881 -12.15596 -12.11682 -11.63605 -11.49357 -11.33600 -11.06148 -10.01883 -9.79830 -9.65683 -9.35034 -8.64431 -8.24487 -6.33617 0.28266 0.42823 0.97702 1.20093 1.40636 1.45256 1.55103 1.56345 2.19453 2.69109 2.94571 3.07832 3.71046 3.89412 4.01896 4.25866 4.32210 4.55072 4.65138 4.68500 4.81722 4.94909 4.99384 5.01951 5.07671 5.15847 5.24762 5.35788 5.39825 5.57707 5.67322 5.77009 5.94082 6.07075 6.11305 6.56042 6.60437 6.79470 6.87472 7.07061 7.85023 8.26862 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.004384 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.870584 B = 6385.184521 C = 7121.779138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.016 4.016 3 N -0.445 5.445 4 C 0.014 3.986 5 C -0.076 4.076 6 C -0.064 4.064 7 C -0.189 4.189 8 C 0.225 3.775 9 N -0.858 5.858 10 C -0.200 4.200 11 C 0.012 3.988 12 Cl -0.075 7.075 13 C -0.137 4.137 14 C -0.159 4.159 15 C 0.041 3.959 16 C -0.465 4.465 17 H 0.089 0.911 18 C 0.032 3.968 19 N -0.819 5.819 20 Si 0.987 3.013 21 H -0.255 1.255 22 H -0.266 1.266 23 H -0.265 1.265 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.128 0.872 28 H 0.154 0.846 29 H 0.411 0.589 30 H 0.408 0.592 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 11.734 1.319 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.160 4.160 3 N -0.153 5.153 4 C -0.122 4.122 5 C -0.080 4.080 6 C -0.084 4.084 7 C -0.212 4.212 8 C 0.118 3.882 9 N -0.398 5.398 10 C -0.224 4.224 11 C -0.016 4.016 12 Cl -0.046 7.046 13 C -0.157 4.157 14 C -0.185 4.185 15 C 0.037 3.963 16 C -0.494 4.494 17 H 0.107 0.893 18 C -0.183 4.183 19 N -0.444 5.444 20 Si 0.807 3.193 21 H -0.178 1.178 22 H -0.191 1.191 23 H -0.190 1.190 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.146 0.854 28 H 0.172 0.828 29 H 0.242 0.758 30 H 0.238 0.762 31 H 0.161 0.839 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.127 12.337 1.273 13.421 hybrid contribution 0.300 -1.522 0.124 1.556 sum 5.428 10.815 1.397 12.181 Atomic orbital electron populations 1.20195 0.89345 1.01410 1.00947 1.21513 0.96663 0.88065 1.09735 1.67072 1.08911 1.29771 1.09593 1.19139 0.89034 0.91684 1.12348 1.18364 0.98099 0.91937 0.99578 1.21043 0.93486 0.97596 0.96235 1.20767 1.04199 0.92458 1.03776 1.17587 0.90660 0.87451 0.92501 1.42225 1.37499 1.11149 1.48938 1.20413 0.99692 0.96636 1.05662 1.20862 0.90877 0.95038 0.94785 1.98335 1.44369 1.96805 1.65055 1.21476 0.99373 0.93066 1.01799 1.21403 0.95027 0.96990 1.05041 1.18744 0.93026 0.94170 0.90369 1.19867 1.02054 0.92878 1.34575 0.89284 1.26877 0.94671 1.05068 0.91718 1.69836 1.17484 1.33243 1.23853 0.85074 0.79379 0.75622 0.79202 1.17780 1.19057 1.19019 0.92502 0.92478 0.91505 0.85365 0.82814 0.75837 0.76223 0.83854 0.86621 0.86437 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.68 9.58 71.24 0.68 -2.00 16 2 C -0.02 -0.83 6.86 43.31 0.30 -0.53 16 3 N -0.45 -22.49 8.42 -171.03 -1.44 -23.93 16 4 C 0.01 0.68 5.99 41.90 0.25 0.93 16 5 C -0.08 -3.06 5.64 -19.99 -0.11 -3.17 16 6 C -0.06 -2.10 9.34 22.50 0.21 -1.89 16 7 C -0.19 -4.75 9.87 22.37 0.22 -4.53 16 8 C 0.23 5.29 6.76 38.42 0.26 5.55 16 9 N -0.86 -11.98 9.07 -51.29 -0.47 -12.44 16 10 C -0.20 -5.68 9.65 22.39 0.22 -5.46 16 11 C 0.01 0.46 6.32 22.57 0.14 0.60 16 12 Cl -0.07 -2.88 26.75 -2.72 -0.07 -2.95 16 13 C -0.14 -6.66 9.31 22.30 0.21 -6.45 16 14 C -0.16 -8.48 8.72 22.63 0.20 -8.28 16 15 C 0.04 2.24 5.60 -21.17 -0.12 2.12 16 16 C -0.46 -24.10 8.15 23.37 0.19 -23.91 16 17 H 0.09 4.38 6.84 -2.91 -0.02 4.36 16 18 C 0.03 1.57 5.26 85.26 0.45 2.02 16 19 N -0.82 -41.34 10.73 21.83 0.23 -41.10 16 20 Si 0.99 36.65 29.58 68.60 2.03 38.68 16 21 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 23 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.07 2.83 6.75 -2.39 -0.02 2.82 16 27 H 0.13 4.10 7.89 -2.91 -0.02 4.07 16 28 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 29 H 0.41 3.81 8.83 -92.71 -0.82 2.99 16 30 H 0.41 4.21 8.83 -92.70 -0.82 3.39 16 31 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 32 H 0.12 4.97 7.89 -2.91 -0.02 4.95 16 33 H 0.12 6.41 6.11 -2.92 -0.02 6.39 16 34 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 Total: -1.00 -63.71 306.74 2.91 -60.80 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.47 Total: 25.95 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 3.09 Total: -45.01 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -1.67 Total: -77.47 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.07 Total: -2.95 kcal Total: -63.71 2.91 -60.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245506568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.111 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds