Wall clock time and date at job start Tue Mar 31 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37987 * 119.94693 * 2 1 4 4 C 1.50698 * 120.05207 * 359.97438 * 3 2 1 5 5 C 1.39380 * 119.88859 * 180.02562 * 3 2 1 6 6 C 1.48285 * 120.11387 * 179.97438 * 5 3 2 7 7 C 1.40042 * 119.98432 * 308.82036 * 6 5 3 8 8 N 1.32176 * 120.29262 * 179.97438 * 7 6 5 9 9 C 1.31891 * 120.28523 * 359.70583 * 8 7 6 10 10 C 1.40821 * 119.96575 * 0.57339 * 9 8 7 11 11 C 1.41321 * 120.14674 * 179.70266 * 10 9 8 12 12 H 1.08004 * 119.99933 * 5.19254 * 11 10 9 13 13 C 1.40049 * 120.00151 * 185.19066 * 11 10 9 14 14 N 1.30735 * 120.00005 * 184.80563 * 13 11 10 15 15 Si 1.86802 * 119.99836 * 4.80942 * 13 11 10 16 16 H 1.48500 * 109.46770 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47022 * 299.99518 * 15 13 11 18 18 H 1.48498 * 109.47133 * 60.00028 * 15 13 11 19 19 N 1.32532 * 119.98569 * 128.79790 * 6 5 3 20 20 C 1.39431 * 119.77544 * 0.25722 * 5 3 2 21 21 C 1.37940 * 119.88648 * 359.53679 * 20 5 3 22 22 C 1.38446 * 119.94141 * 180.02562 * 2 1 3 23 23 Cl 1.73598 * 119.89055 * 359.97438 * 22 2 1 24 24 H 1.08992 * 109.47525 * 89.99688 * 1 2 3 25 25 H 1.09007 * 109.46729 * 209.99829 * 1 2 3 26 26 H 1.09000 * 109.46945 * 329.98999 * 1 2 3 27 27 H 1.09002 * 109.46965 * 275.26026 * 4 3 2 28 28 H 1.09001 * 109.47627 * 35.25940 * 4 3 2 29 29 H 1.09006 * 109.47356 * 155.26408 * 4 3 2 30 30 H 1.08001 * 119.85521 * 0.02562 * 7 6 5 31 31 H 1.07997 * 120.01780 * 180.30103 * 9 8 7 32 32 H 0.97000 * 119.99933 * 354.97097 * 14 13 11 33 33 H 1.08004 * 120.06000 * 179.74546 * 20 5 3 34 34 H 1.08004 * 119.94974 * 180.19056 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1956 0.0000 4 6 1.4423 2.5007 -0.0006 5 6 3.5896 1.1942 -0.0005 6 6 4.3349 2.4762 -0.0011 7 6 4.0289 3.4632 -0.9463 8 7 4.6890 4.6083 -0.9520 9 6 5.6377 4.8336 -0.0639 10 6 5.9589 3.8468 0.8880 11 6 6.9790 4.0817 1.8373 12 1 7.4566 5.0490 1.8886 13 6 7.3707 3.0601 2.7117 14 7 8.2467 3.3038 3.6510 15 14 6.6414 1.3494 2.5356 16 1 7.2163 0.4570 3.5740 17 1 5.1677 1.4199 2.7035 18 1 6.9611 0.8112 1.1890 19 7 5.2900 2.6875 0.8931 20 6 4.2808 -0.0167 -0.0065 21 6 3.5829 -1.2065 -0.0022 22 6 2.1980 -1.1997 -0.0005 23 17 1.3256 -2.7005 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8899 0.5140 27 1 1.1795 2.7680 -1.0241 28 1 0.5337 2.3960 0.5923 29 1 2.0688 3.2822 0.4295 30 1 3.2496 3.2883 -1.6732 31 1 6.1710 5.7727 -0.0695 32 1 8.6796 4.1706 3.6974 33 1 5.3608 -0.0232 -0.0111 34 1 4.1173 -2.1451 -0.0037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245686125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:05 Heat of formation + Delta-G solvation = 29.248512 kcal Electronic energy + Delta-G solvation = -20004.387838 eV Core-core repulsion = 16926.573305 eV Total energy + Delta-G solvation = -3077.814534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10183 -38.90892 -36.47922 -34.37448 -33.61734 -33.09308 -32.16149 -29.80721 -27.51530 -26.36466 -26.01719 -23.80149 -22.07141 -20.83989 -20.38255 -18.67512 -16.55942 -16.35179 -15.84409 -15.76549 -15.31986 -14.44316 -14.09418 -13.53212 -13.47693 -13.15429 -12.98922 -12.88322 -12.65623 -12.46622 -12.36736 -12.03332 -11.87766 -11.32238 -11.17491 -11.14400 -11.05149 -11.00004 -10.62668 -9.97948 -9.82296 -9.50290 -9.23105 -8.68333 -8.53677 -7.95404 -7.81433 -7.30548 -5.06610 1.07226 1.40682 2.16257 2.17870 2.46485 3.42865 3.50641 3.73156 3.84318 4.23232 4.42402 4.68578 4.83524 4.88484 5.14301 5.24312 5.33801 5.50510 5.55277 5.59323 5.63169 5.76515 5.82742 5.91229 5.95633 6.02244 6.08217 6.29209 6.36641 6.41502 6.54233 6.69606 6.78918 6.93505 7.14891 7.19355 7.74342 7.90805 8.27964 8.69325 9.17239 9.74028 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.005887 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.859677 B = 4754.833221 C = 5798.890972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.081 4.081 3 C -0.056 4.056 4 C -0.117 4.117 5 C -0.011 4.011 6 C 0.166 3.834 7 C -0.099 4.099 8 N -0.419 5.419 9 C -0.040 4.040 10 C 0.199 3.801 11 C -0.449 4.449 12 H 0.090 0.910 13 C 0.043 3.957 14 N -0.787 5.787 15 Si 1.140 2.860 16 H -0.325 1.325 17 H -0.270 1.270 18 H -0.289 1.289 19 N -0.532 5.532 20 C -0.087 4.087 21 C -0.114 4.114 22 C -0.035 4.035 23 Cl -0.079 7.079 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.287 0.713 33 H 0.136 0.864 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 -7.497 -5.284 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.082 4.082 3 C -0.057 4.057 4 C -0.173 4.173 5 C -0.013 4.013 6 C 0.022 3.978 7 C -0.256 4.256 8 N -0.129 5.129 9 C -0.212 4.212 10 C 0.074 3.926 11 C -0.481 4.481 12 H 0.108 0.892 13 C -0.181 4.181 14 N -0.408 5.408 15 Si 0.974 3.026 16 H -0.258 1.258 17 H -0.197 1.197 18 H -0.217 1.217 19 N -0.254 5.254 20 C -0.106 4.106 21 C -0.133 4.133 22 C -0.061 4.061 23 Cl -0.050 7.050 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.099 0.901 33 H 0.154 0.846 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.288 -8.976 -4.567 15.128 hybrid contribution 0.306 1.601 -0.623 1.745 sum -10.981 -7.375 -5.190 14.210 Atomic orbital electron populations 1.20883 0.90419 1.03360 1.02694 1.19401 0.96434 0.90599 1.01749 1.19650 0.92206 0.94751 0.99079 1.20966 0.99776 0.94032 1.02518 1.18592 0.91898 0.92122 0.98693 1.20207 0.92779 0.92441 0.92348 1.22471 1.06628 0.92221 1.04241 1.67728 1.04324 1.19791 1.21092 1.23170 1.00405 1.00992 0.96656 1.19430 0.92126 0.88267 0.92737 1.20839 1.13919 1.00766 1.12563 0.89192 1.27850 0.93286 1.07545 0.89415 1.70637 1.17912 1.26886 1.25357 0.82136 0.76524 0.69762 0.74182 1.25807 1.19715 1.21749 1.67586 1.10879 1.22428 1.24524 1.21309 1.00765 0.90623 0.97941 1.20911 0.91734 0.98937 1.01703 1.20763 0.92143 0.86135 1.07083 1.98328 1.76856 1.32782 1.97018 0.90833 0.91092 0.90794 0.90647 0.91329 0.90550 0.84596 0.84213 0.90108 0.84606 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.20 36.01 0.33 -0.93 16 2 C -0.08 -1.14 5.88 -104.64 -0.62 -1.75 16 3 C -0.06 -0.88 5.87 -104.29 -0.61 -1.50 16 4 C -0.12 -1.62 8.01 36.00 0.29 -1.33 16 5 C -0.01 -0.21 5.60 -104.90 -0.59 -0.80 16 6 C 0.17 3.60 5.50 -82.76 -0.45 3.15 16 7 C -0.10 -2.07 9.01 -16.73 -0.15 -2.22 16 8 N -0.42 -9.40 10.47 -12.05 -0.13 -9.52 16 9 C -0.04 -0.93 10.98 -16.55 -0.18 -1.11 16 10 C 0.20 4.96 6.39 -84.84 -0.54 4.41 16 11 C -0.45 -11.47 9.59 -37.73 -0.36 -11.83 16 12 H 0.09 2.24 8.05 -52.48 -0.42 1.82 16 13 C 0.04 1.10 5.52 -17.34 -0.10 1.00 16 14 N -0.79 -20.37 13.65 55.55 0.76 -19.61 16 15 Si 1.14 27.18 24.88 -169.99 -4.23 22.95 16 16 H -0.33 -7.71 7.11 56.52 0.40 -7.31 16 17 H -0.27 -6.55 6.60 56.52 0.37 -6.18 16 18 H -0.29 -6.70 6.34 56.52 0.36 -6.34 16 19 N -0.53 -12.96 4.61 -7.50 -0.03 -13.00 16 20 C -0.09 -1.54 9.38 -39.25 -0.37 -1.91 16 21 C -0.11 -1.70 9.81 -39.60 -0.39 -2.09 16 22 C -0.03 -0.49 6.32 -39.41 -0.25 -0.74 16 23 Cl -0.08 -0.95 27.27 -51.86 -1.41 -2.36 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.72 6.89 -51.92 -0.36 0.37 16 26 H 0.07 0.72 6.03 -51.93 -0.31 0.41 16 27 H 0.07 0.92 7.82 -51.93 -0.41 0.51 16 28 H 0.07 0.80 6.17 -51.93 -0.32 0.48 16 29 H 0.08 1.26 6.13 -51.93 -0.32 0.94 16 30 H 0.14 2.47 7.13 -52.49 -0.37 2.09 16 31 H 0.14 2.94 8.06 -52.49 -0.42 2.52 16 32 H 0.29 7.02 8.72 -40.82 -0.36 6.66 16 33 H 0.14 2.48 6.85 -52.48 -0.36 2.12 16 34 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 296.03 15.07 4.46 4.46 Total: -1.00 -27.18 296.03 -7.94 -35.11 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.36 Total: -0.39 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -3.99 Total: -17.64 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.60 Total: -42.13 kcal Atomic # 14 Polarization: 27.18 SS G_CDS: -4.23 Total: 22.95 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.41 Total: -2.36 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.18 -7.94 -35.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245686125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.361 kcal (2) G-P(sol) polarization free energy of solvation -27.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds