Wall clock time and date at job start Tue Mar 31 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37987 * 119.94693 * 2 1 4 4 C 1.50698 * 120.05207 * 359.97438 * 3 2 1 5 5 C 1.39380 * 119.88859 * 180.02562 * 3 2 1 6 6 C 1.48285 * 120.11387 * 179.97438 * 5 3 2 7 7 C 1.40042 * 119.98432 * 308.82036 * 6 5 3 8 8 N 1.32176 * 120.29262 * 179.97438 * 7 6 5 9 9 C 1.31891 * 120.28523 * 359.70583 * 8 7 6 10 10 C 1.40821 * 119.96575 * 0.57339 * 9 8 7 11 11 C 1.41321 * 120.14674 * 179.70266 * 10 9 8 12 12 H 1.08004 * 119.99933 * 5.19254 * 11 10 9 13 13 C 1.40049 * 120.00151 * 185.19066 * 11 10 9 14 14 N 1.30735 * 120.00005 * 184.80563 * 13 11 10 15 15 Si 1.86802 * 119.99836 * 4.80942 * 13 11 10 16 16 H 1.48500 * 109.46770 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47022 * 299.99518 * 15 13 11 18 18 H 1.48498 * 109.47133 * 60.00028 * 15 13 11 19 19 N 1.32532 * 119.98569 * 128.79790 * 6 5 3 20 20 C 1.39431 * 119.77544 * 0.25722 * 5 3 2 21 21 C 1.37940 * 119.88648 * 359.53679 * 20 5 3 22 22 C 1.38446 * 119.94141 * 180.02562 * 2 1 3 23 23 Cl 1.73598 * 119.89055 * 359.97438 * 22 2 1 24 24 H 1.08992 * 109.47525 * 89.99688 * 1 2 3 25 25 H 1.09007 * 109.46729 * 209.99829 * 1 2 3 26 26 H 1.09000 * 109.46945 * 329.98999 * 1 2 3 27 27 H 1.09002 * 109.46965 * 275.26026 * 4 3 2 28 28 H 1.09001 * 109.47627 * 35.25940 * 4 3 2 29 29 H 1.09006 * 109.47356 * 155.26408 * 4 3 2 30 30 H 1.08001 * 119.85521 * 0.02562 * 7 6 5 31 31 H 1.07997 * 120.01780 * 180.30103 * 9 8 7 32 32 H 0.97000 * 119.99933 * 354.97097 * 14 13 11 33 33 H 1.08004 * 120.06000 * 179.74546 * 20 5 3 34 34 H 1.08004 * 119.94974 * 180.19056 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1956 0.0000 4 6 1.4423 2.5007 -0.0006 5 6 3.5896 1.1942 -0.0005 6 6 4.3349 2.4762 -0.0011 7 6 4.0289 3.4632 -0.9463 8 7 4.6890 4.6083 -0.9520 9 6 5.6377 4.8336 -0.0639 10 6 5.9589 3.8468 0.8880 11 6 6.9790 4.0817 1.8373 12 1 7.4566 5.0490 1.8886 13 6 7.3707 3.0601 2.7117 14 7 8.2467 3.3038 3.6510 15 14 6.6414 1.3494 2.5356 16 1 7.2163 0.4570 3.5740 17 1 5.1677 1.4199 2.7035 18 1 6.9611 0.8112 1.1890 19 7 5.2900 2.6875 0.8931 20 6 4.2808 -0.0167 -0.0065 21 6 3.5829 -1.2065 -0.0022 22 6 2.1980 -1.1997 -0.0005 23 17 1.3256 -2.7005 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8899 0.5140 27 1 1.1795 2.7680 -1.0241 28 1 0.5337 2.3960 0.5923 29 1 2.0688 3.2822 0.4295 30 1 3.2496 3.2883 -1.6732 31 1 6.1710 5.7727 -0.0695 32 1 8.6796 4.1706 3.6974 33 1 5.3608 -0.0232 -0.0111 34 1 4.1173 -2.1451 -0.0037 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245686125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:04 Heat of formation + Delta-G solvation = 15.180781 kcal Electronic energy + Delta-G solvation = -20004.997861 eV Core-core repulsion = 16926.573305 eV Total energy + Delta-G solvation = -3078.424556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64902 -40.34571 -37.55108 -36.25095 -35.03345 -34.41088 -33.80346 -31.33456 -28.67310 -27.85098 -27.42995 -25.41498 -23.79783 -22.05029 -21.80017 -20.58993 -18.10952 -17.81438 -17.49905 -17.06846 -16.76362 -15.83004 -15.49166 -15.21697 -15.11699 -14.62574 -14.51360 -14.07657 -13.86481 -13.70571 -13.53024 -13.30010 -13.23329 -13.04792 -12.86563 -12.45302 -12.33283 -12.07128 -11.87788 -11.74820 -11.57342 -11.39977 -11.09006 -10.25524 -9.75708 -9.67381 -9.46045 -9.11723 -6.98884 -0.28557 0.22881 0.45407 0.67239 1.08790 1.49663 1.60759 1.93309 2.32620 2.43638 2.58158 3.22423 3.40189 3.73239 3.76117 3.84655 4.01193 4.06583 4.24887 4.28568 4.42141 4.60728 4.67484 4.74193 4.77020 4.79025 4.88147 4.90382 5.09355 5.15626 5.24725 5.27769 5.32039 5.41290 5.51045 5.75470 5.82996 6.05709 6.38054 6.87605 7.35557 7.80798 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.005887 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.859677 B = 4754.833221 C = 5798.890972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C -0.057 4.057 4 C -0.115 4.115 5 C -0.046 4.046 6 C 0.162 3.838 7 C -0.080 4.080 8 N -0.424 5.424 9 C -0.054 4.054 10 C 0.189 3.811 11 C -0.479 4.479 12 H 0.084 0.916 13 C 0.021 3.979 14 N -0.811 5.811 15 Si 1.168 2.832 16 H -0.326 1.326 17 H -0.279 1.279 18 H -0.287 1.287 19 N -0.549 5.549 20 C -0.104 4.104 21 C -0.112 4.112 22 C -0.034 4.034 23 Cl -0.054 7.054 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.169 0.831 31 H 0.154 0.846 32 H 0.289 0.711 33 H 0.119 0.881 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 -9.028 -6.636 18.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.077 4.077 3 C -0.058 4.058 4 C -0.171 4.171 5 C -0.047 4.047 6 C 0.019 3.981 7 C -0.237 4.237 8 N -0.135 5.135 9 C -0.223 4.223 10 C 0.064 3.936 11 C -0.512 4.512 12 H 0.102 0.898 13 C -0.199 4.199 14 N -0.433 5.433 15 Si 1.001 2.999 16 H -0.259 1.259 17 H -0.207 1.207 18 H -0.214 1.214 19 N -0.272 5.272 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.061 4.061 23 Cl -0.025 7.025 24 H 0.111 0.889 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.186 0.814 31 H 0.172 0.828 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.325 -10.489 -5.925 18.717 hybrid contribution 0.984 1.958 -0.379 2.224 sum -13.341 -8.531 -6.304 17.044 Atomic orbital electron populations 1.20993 0.87696 1.04411 1.04188 1.19755 0.98268 0.89720 0.99963 1.19848 0.91089 0.96380 0.98488 1.20999 0.99946 0.92022 1.04099 1.18625 0.93158 0.90926 1.02039 1.20740 0.91936 0.94031 0.91381 1.23063 1.05830 0.91205 1.03604 1.67812 1.04292 1.20509 1.20854 1.23335 1.00977 1.01356 0.96637 1.19590 0.92078 0.89030 0.92951 1.20814 1.15471 1.00823 1.14122 0.89784 1.28330 0.93347 1.08806 0.89393 1.70637 1.19206 1.27247 1.26243 0.81744 0.75507 0.68523 0.74113 1.25861 1.20685 1.21445 1.67526 1.11748 1.22373 1.25580 1.21243 1.00198 0.91511 0.99403 1.21089 0.92371 0.98787 1.00825 1.20936 0.92137 0.87404 1.05633 1.98342 1.76169 1.31196 1.96794 0.88936 0.90384 0.89469 0.88497 0.88713 0.93551 0.81370 0.82844 0.90008 0.86297 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.20 71.24 0.66 -1.31 16 2 C -0.08 -1.87 5.88 -19.87 -0.12 -1.98 16 3 C -0.06 -1.65 5.87 -19.65 -0.12 -1.76 16 4 C -0.11 -2.82 8.01 71.24 0.57 -2.24 16 5 C -0.05 -1.66 5.60 -20.04 -0.11 -1.77 16 6 C 0.16 6.93 5.50 42.15 0.23 7.16 16 7 C -0.08 -3.18 9.01 85.08 0.77 -2.42 16 8 N -0.42 -18.54 10.47 -192.05 -2.01 -20.55 16 9 C -0.05 -2.51 10.98 85.32 0.94 -1.58 16 10 C 0.19 9.60 6.39 40.23 0.26 9.85 16 11 C -0.48 -25.39 9.59 23.47 0.23 -25.17 16 12 H 0.08 4.39 8.05 -2.91 -0.02 4.37 16 13 C 0.02 1.13 5.52 85.30 0.47 1.60 16 14 N -0.81 -43.30 13.65 21.84 0.30 -43.00 16 15 Si 1.17 56.51 24.88 68.60 1.71 58.22 16 16 H -0.33 -15.49 7.11 99.48 0.71 -14.78 16 17 H -0.28 -13.74 6.60 99.48 0.66 -13.09 16 18 H -0.29 -13.48 6.34 99.48 0.63 -12.85 16 19 N -0.55 -27.01 4.61 -177.66 -0.82 -27.83 16 20 C -0.10 -3.59 9.38 22.49 0.21 -3.38 16 21 C -0.11 -3.10 9.81 22.26 0.22 -2.88 16 22 C -0.03 -0.86 6.32 22.38 0.14 -0.72 16 23 Cl -0.05 -1.11 27.27 -2.72 -0.07 -1.18 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.23 6.89 -2.38 -0.02 1.22 16 26 H 0.09 1.26 6.03 -2.39 -0.01 1.25 16 27 H 0.10 1.95 7.82 -2.39 -0.02 1.93 16 28 H 0.09 1.82 6.17 -2.39 -0.01 1.80 16 29 H 0.05 1.43 6.13 -2.38 -0.01 1.41 16 30 H 0.17 5.57 7.13 -2.91 -0.02 5.55 16 31 H 0.15 6.52 8.06 -2.91 -0.02 6.50 16 32 H 0.29 14.66 8.72 -92.71 -0.81 13.85 16 33 H 0.12 4.39 6.85 -2.91 -0.02 4.37 16 34 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -59.10 296.03 4.42 -54.68 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 0.98 Total: 6.26 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 4.34 Total: -26.60 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -2.53 Total: -91.38 kcal Atomic # 14 Polarization: 56.51 SS G_CDS: 1.71 Total: 58.22 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.07 Total: -1.18 kcal Total: -59.10 4.42 -54.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245686125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.861 kcal (2) G-P(sol) polarization free energy of solvation -59.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds