Wall clock time and date at job start Tue Mar 31 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37885 * 119.92565 * 2 1 4 4 C 1.50699 * 120.07781 * 0.02562 * 3 2 1 5 5 C 1.39708 * 119.85271 * 180.25088 * 3 2 1 6 6 C 1.47755 * 120.14020 * 179.76740 * 5 3 2 7 7 N 1.32879 * 120.24714 * 307.51247 * 6 5 3 8 8 C 1.32007 * 120.07637 * 180.02562 * 7 6 5 9 9 C 1.39203 * 120.58862 * 0.02562 * 8 7 6 10 10 N 1.31598 * 120.50893 * 359.97438 * 9 8 7 11 11 C 1.33975 * 119.90330 * 0.02562 * 10 9 8 12 12 C 1.40782 * 120.29320 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00204 * 167.33230 * 12 11 10 14 14 C 1.40170 * 119.99630 * 347.33663 * 12 11 10 15 15 N 1.30681 * 119.99822 * 167.82201 * 14 12 11 16 16 Si 1.86799 * 120.00170 * 347.81373 * 14 12 11 17 17 H 1.48500 * 109.46802 * 84.82676 * 16 14 12 18 18 H 1.48492 * 109.47496 * 204.82784 * 16 14 12 19 19 H 1.48504 * 109.47203 * 324.83359 * 16 14 12 20 20 C 1.39743 * 119.72349 * 359.49772 * 5 3 2 21 21 C 1.37850 * 119.85443 * 0.24783 * 20 5 3 22 22 C 1.38524 * 119.93020 * 179.74279 * 2 1 3 23 23 Cl 1.73601 * 119.86040 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47021 * 270.25532 * 1 2 3 25 25 H 1.09002 * 109.46985 * 30.25922 * 1 2 3 26 26 H 1.09003 * 109.46988 * 150.25872 * 1 2 3 27 27 H 1.09003 * 109.46739 * 273.57653 * 4 3 2 28 28 H 1.09004 * 109.47007 * 33.56958 * 4 3 2 29 29 H 1.09000 * 109.47481 * 153.57179 * 4 3 2 30 30 H 1.07994 * 119.70351 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.74569 * 179.72338 * 9 8 7 32 32 H 0.96999 * 120.00125 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.07249 * 180.27715 * 20 5 3 34 34 H 1.08001 * 119.92683 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.1950 0.0000 4 6 1.4415 2.5002 0.0006 5 6 3.5920 1.1932 -0.0053 6 6 4.3355 2.4701 -0.0105 7 7 4.0648 3.3985 -0.9218 8 6 4.7315 4.5379 -0.9236 9 6 5.7222 4.7804 0.0237 10 7 6.0092 3.8771 0.9366 11 6 5.3450 2.7138 0.9570 12 6 5.6456 1.7414 1.9297 13 1 4.9832 0.9010 2.0760 14 6 6.8047 1.8640 2.7083 15 7 6.9673 1.1077 3.7616 16 14 8.1171 3.1081 2.2402 17 1 7.7645 4.4356 2.8048 18 1 9.4287 2.6720 2.7828 19 1 8.2012 3.2060 0.7608 20 6 4.2834 -0.0212 0.0001 21 6 3.5838 -1.2090 0.0054 22 6 2.1982 -1.2005 0.0054 23 17 1.3247 -2.7007 0.0128 24 1 -0.3633 0.0046 1.0276 25 1 -0.3633 0.8877 -0.5179 26 1 -0.3633 -0.8923 -0.5098 27 1 1.2040 2.7829 -1.0250 28 1 0.5185 2.3866 0.5692 29 1 2.0570 3.2748 0.4579 30 1 4.5069 5.2881 -1.6672 31 1 6.2623 5.7155 0.0068 32 1 7.7695 1.1923 4.3002 33 1 5.3633 -0.0291 0.0005 34 1 4.1170 -2.1482 0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245686331.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:06 Heat of formation + Delta-G solvation = 32.750337 kcal Electronic energy + Delta-G solvation = -20139.178260 eV Core-core repulsion = 17061.515577 eV Total energy + Delta-G solvation = -3077.662683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.85811 -38.65420 -36.17048 -34.34132 -33.23519 -32.98622 -31.91466 -29.88002 -27.21076 -26.44799 -25.87562 -23.51042 -22.10228 -20.52546 -20.37856 -17.99610 -16.43869 -16.23255 -15.73087 -15.45741 -15.12550 -14.15871 -14.07553 -13.57813 -13.35386 -12.89898 -12.67467 -12.56408 -12.48373 -12.18890 -12.11439 -11.97055 -11.78980 -11.43446 -11.14051 -11.02598 -10.82144 -10.77431 -10.44455 -10.31456 -9.84589 -9.61026 -9.34022 -8.46887 -8.15846 -7.90658 -7.53034 -7.21111 -4.99321 1.44740 1.79368 2.19697 2.49116 2.53867 3.24436 3.31540 3.38920 4.07215 4.13372 4.33933 5.06729 5.15575 5.16376 5.29508 5.50188 5.59021 5.60259 5.81207 5.86583 5.90667 5.98078 6.05623 6.10830 6.15168 6.31649 6.33843 6.39809 6.56600 6.64419 6.72154 6.85696 6.90154 7.20612 7.30241 7.40501 7.81805 8.10666 8.19275 8.77599 9.23126 9.66200 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.006041 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.719790 B = 4633.938708 C = 5712.839232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.063 4.063 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.007 4.007 7 N -0.396 5.396 8 C -0.119 4.119 9 C 0.113 3.887 10 N -0.539 5.539 11 C 0.203 3.797 12 C -0.376 4.376 13 H 0.110 0.890 14 C 0.079 3.921 15 N -0.771 5.771 16 Si 0.996 3.004 17 H -0.270 1.270 18 H -0.322 1.322 19 H -0.266 1.266 20 C -0.085 4.085 21 C -0.115 4.115 22 C -0.044 4.044 23 Cl -0.090 7.090 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.295 0.705 33 H 0.136 0.864 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 -1.749 -4.665 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.064 4.064 4 C -0.155 4.155 5 C 0.029 3.971 6 C -0.156 4.156 7 N -0.108 5.108 8 C -0.278 4.278 9 C -0.055 4.055 10 N -0.261 5.261 11 C 0.081 3.919 12 C -0.406 4.406 13 H 0.128 0.872 14 C -0.147 4.147 15 N -0.392 5.392 16 Si 0.828 3.172 17 H -0.196 1.196 18 H -0.254 1.254 19 H -0.192 1.192 20 C -0.104 4.104 21 C -0.134 4.134 22 C -0.071 4.071 23 Cl -0.061 7.061 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.106 0.894 33 H 0.154 0.846 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.370 -2.014 -4.418 8.010 hybrid contribution 0.649 0.395 0.019 0.760 sum -5.722 -1.619 -4.400 7.397 Atomic orbital electron populations 1.20811 0.91021 1.02821 1.02334 1.19349 0.96030 0.90820 1.02400 1.19739 0.92795 0.94165 0.99703 1.20658 0.98729 0.94173 1.01949 1.18248 0.91234 0.91493 0.96156 1.19833 1.02758 0.94620 0.98351 1.67794 1.22335 1.00247 1.20397 1.22480 1.02925 0.97513 1.04922 1.23191 0.94306 0.97229 0.90735 1.67603 1.29871 1.03208 1.25368 1.19173 0.89803 0.90685 0.92277 1.19719 1.05421 1.05884 1.09591 0.87195 1.26548 1.00423 0.95650 0.92107 1.69590 1.27134 1.32281 1.10182 0.84619 0.73721 0.78905 0.79913 1.19630 1.25406 1.19228 1.21245 1.00604 0.90440 0.98086 1.20810 0.91558 0.98827 1.02230 1.20698 0.92047 0.85579 1.08759 1.98304 1.77058 1.33539 1.97188 0.91238 0.91281 0.91361 0.91160 0.92503 0.91336 0.84643 0.84582 0.89414 0.84630 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 8.79 36.01 0.32 -1.19 16 2 C -0.09 -1.42 5.88 -104.64 -0.62 -2.04 16 3 C -0.06 -1.17 5.91 -104.20 -0.62 -1.78 16 4 C -0.10 -1.66 8.18 36.01 0.29 -1.37 16 5 C 0.03 0.63 5.01 -104.90 -0.53 0.11 16 6 C -0.01 -0.16 5.28 -82.11 -0.43 -0.59 16 7 N -0.40 -8.67 9.10 -8.97 -0.08 -8.75 16 8 C -0.12 -2.39 11.22 -17.12 -0.19 -2.59 16 9 C 0.11 2.34 11.22 -17.29 -0.19 2.14 16 10 N -0.54 -12.91 5.31 -10.73 -0.06 -12.97 16 11 C 0.20 4.98 6.22 -84.55 -0.53 4.46 16 12 C -0.38 -9.45 8.29 -37.90 -0.31 -9.76 16 13 H 0.11 2.82 6.13 -52.49 -0.32 2.50 16 14 C 0.08 1.95 5.52 -17.32 -0.10 1.86 16 15 N -0.77 -18.99 13.92 55.56 0.77 -18.21 16 16 Si 1.00 22.48 25.41 -169.99 -4.32 18.16 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.32 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.26 6.72 56.52 0.38 -5.88 16 20 C -0.08 -1.65 7.78 -39.16 -0.30 -1.95 16 21 C -0.12 -1.99 9.81 -39.60 -0.39 -2.38 16 22 C -0.04 -0.74 6.32 -39.36 -0.25 -0.98 16 23 Cl -0.09 -1.28 27.27 -51.86 -1.41 -2.69 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.83 6.78 -51.93 -0.35 0.48 16 26 H 0.07 0.84 6.89 -51.93 -0.36 0.49 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.82 6.91 -51.93 -0.36 0.46 16 29 H 0.07 1.31 6.57 -51.93 -0.34 0.97 16 30 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.30 6.58 8.29 -40.82 -0.34 6.24 16 33 H 0.14 2.69 7.48 -52.49 -0.39 2.30 16 34 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 296.88 15.07 4.47 4.47 Total: -1.00 -26.69 296.88 -7.86 -34.55 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.39 Total: 1.51 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -3.84 Total: -16.08 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.63 Total: -39.93 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.32 Total: 18.16 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.41 Total: -2.69 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.69 -7.86 -34.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245686331.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.298 kcal (2) G-P(sol) polarization free energy of solvation -26.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds