Wall clock time and date at job start Tue Mar 31 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37885 * 119.92565 * 2 1 4 4 C 1.50699 * 120.07781 * 0.02562 * 3 2 1 5 5 C 1.39708 * 119.85271 * 180.25088 * 3 2 1 6 6 C 1.47755 * 120.14020 * 179.76740 * 5 3 2 7 7 N 1.32879 * 120.24714 * 307.51247 * 6 5 3 8 8 C 1.32007 * 120.07637 * 180.02562 * 7 6 5 9 9 C 1.39203 * 120.58862 * 0.02562 * 8 7 6 10 10 N 1.31598 * 120.50893 * 359.97438 * 9 8 7 11 11 C 1.33975 * 119.90330 * 0.02562 * 10 9 8 12 12 C 1.40782 * 120.29320 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00204 * 167.33230 * 12 11 10 14 14 C 1.40170 * 119.99630 * 347.33663 * 12 11 10 15 15 N 1.30681 * 119.99822 * 167.82201 * 14 12 11 16 16 Si 1.86799 * 120.00170 * 347.81373 * 14 12 11 17 17 H 1.48500 * 109.46802 * 84.82676 * 16 14 12 18 18 H 1.48492 * 109.47496 * 204.82784 * 16 14 12 19 19 H 1.48504 * 109.47203 * 324.83359 * 16 14 12 20 20 C 1.39743 * 119.72349 * 359.49772 * 5 3 2 21 21 C 1.37850 * 119.85443 * 0.24783 * 20 5 3 22 22 C 1.38524 * 119.93020 * 179.74279 * 2 1 3 23 23 Cl 1.73601 * 119.86040 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47021 * 270.25532 * 1 2 3 25 25 H 1.09002 * 109.46985 * 30.25922 * 1 2 3 26 26 H 1.09003 * 109.46988 * 150.25872 * 1 2 3 27 27 H 1.09003 * 109.46739 * 273.57653 * 4 3 2 28 28 H 1.09004 * 109.47007 * 33.56958 * 4 3 2 29 29 H 1.09000 * 109.47481 * 153.57179 * 4 3 2 30 30 H 1.07994 * 119.70351 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.74569 * 179.72338 * 9 8 7 32 32 H 0.96999 * 120.00125 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.07249 * 180.27715 * 20 5 3 34 34 H 1.08001 * 119.92683 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.1950 0.0000 4 6 1.4415 2.5002 0.0006 5 6 3.5920 1.1932 -0.0053 6 6 4.3355 2.4701 -0.0105 7 7 4.0648 3.3985 -0.9218 8 6 4.7315 4.5379 -0.9236 9 6 5.7222 4.7804 0.0237 10 7 6.0092 3.8771 0.9366 11 6 5.3450 2.7138 0.9570 12 6 5.6456 1.7414 1.9297 13 1 4.9832 0.9010 2.0760 14 6 6.8047 1.8640 2.7083 15 7 6.9673 1.1077 3.7616 16 14 8.1171 3.1081 2.2402 17 1 7.7645 4.4356 2.8048 18 1 9.4287 2.6720 2.7828 19 1 8.2012 3.2060 0.7608 20 6 4.2834 -0.0212 0.0001 21 6 3.5838 -1.2090 0.0054 22 6 2.1982 -1.2005 0.0054 23 17 1.3247 -2.7007 0.0128 24 1 -0.3633 0.0046 1.0276 25 1 -0.3633 0.8877 -0.5179 26 1 -0.3633 -0.8923 -0.5098 27 1 1.2040 2.7829 -1.0250 28 1 0.5185 2.3866 0.5692 29 1 2.0570 3.2748 0.4579 30 1 4.5069 5.2881 -1.6672 31 1 6.2623 5.7155 0.0068 32 1 7.7695 1.1923 4.3002 33 1 5.3633 -0.0291 0.0005 34 1 4.1170 -2.1482 0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245686331.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:06 Heat of formation + Delta-G solvation = 19.486070 kcal Electronic energy + Delta-G solvation = -20139.753442 eV Core-core repulsion = 17061.515577 eV Total energy + Delta-G solvation = -3078.237865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47554 -40.13794 -37.43679 -36.11703 -34.79559 -34.44565 -33.52466 -31.40631 -28.60327 -28.10602 -27.21864 -25.11460 -23.84423 -21.97948 -21.79489 -19.81637 -18.15605 -17.70102 -17.28874 -16.89672 -16.71705 -15.79579 -15.37011 -15.11374 -14.98836 -14.64214 -14.13363 -13.92977 -13.76399 -13.58164 -13.50128 -13.30288 -13.26193 -13.10510 -12.82060 -12.65825 -12.25593 -12.05154 -11.95735 -11.64773 -11.52211 -11.44761 -11.09908 -10.09904 -9.58905 -9.51712 -9.11780 -9.01599 -6.80764 -0.06055 0.40056 0.52693 0.81626 1.19037 1.41745 1.51538 1.58154 2.32463 2.51481 2.68246 3.47773 3.55857 3.87606 3.88506 3.95497 4.18590 4.21950 4.31671 4.47025 4.60732 4.65169 4.75669 4.79334 4.83701 4.87893 4.91540 4.97000 5.11405 5.16398 5.31475 5.34174 5.47632 5.68705 5.75562 5.92309 5.94987 6.34439 6.38959 7.03777 7.49613 7.90113 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.006041 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.719790 B = 4633.938708 C = 5712.839232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.074 4.074 4 C -0.090 4.090 5 C -0.001 4.001 6 C -0.013 4.013 7 N -0.407 5.407 8 C -0.102 4.102 9 C 0.101 3.899 10 N -0.562 5.562 11 C 0.192 3.808 12 C -0.407 4.407 13 H 0.091 0.909 14 C 0.055 3.945 15 N -0.803 5.803 16 Si 1.041 2.959 17 H -0.276 1.276 18 H -0.311 1.311 19 H -0.282 1.282 20 C -0.099 4.099 21 C -0.116 4.116 22 C -0.047 4.047 23 Cl -0.063 7.063 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.303 0.697 33 H 0.119 0.881 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 -1.178 -5.882 9.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.075 4.075 4 C -0.147 4.147 5 C -0.003 4.003 6 C -0.159 4.159 7 N -0.119 5.119 8 C -0.262 4.262 9 C -0.065 4.065 10 N -0.284 5.284 11 C 0.068 3.932 12 C -0.438 4.438 13 H 0.109 0.891 14 C -0.168 4.168 15 N -0.425 5.425 16 Si 0.873 3.127 17 H -0.202 1.202 18 H -0.242 1.242 19 H -0.209 1.209 20 C -0.119 4.119 21 C -0.135 4.135 22 C -0.073 4.073 23 Cl -0.034 7.034 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.194 0.806 31 H 0.194 0.806 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.915 -1.456 -5.635 9.824 hybrid contribution 0.973 0.268 0.212 1.031 sum -6.942 -1.188 -5.423 8.889 Atomic orbital electron populations 1.20899 0.88237 1.04189 1.03487 1.19718 0.97973 0.90010 1.00758 1.19979 0.92101 0.95751 0.99662 1.20612 0.99006 0.92431 1.02632 1.18391 0.92461 0.91007 0.98409 1.20092 1.02396 0.95611 0.97822 1.67913 1.22930 1.00841 1.20238 1.23251 1.01066 0.97336 1.04564 1.23887 0.94664 0.97990 0.89967 1.67569 1.30413 1.03587 1.26789 1.19346 0.90468 0.90879 0.92514 1.19583 1.06260 1.06431 1.11481 0.89125 1.26977 1.01232 0.96530 0.92049 1.69584 1.28193 1.33696 1.11059 0.83966 0.72914 0.77377 0.78430 1.20198 1.24195 1.20862 1.21176 1.00027 0.91283 0.99368 1.20987 0.92255 0.98709 1.01540 1.20850 0.92033 0.86909 1.07543 1.98311 1.76319 1.31782 1.96998 0.90010 0.89767 0.90216 0.90244 0.89863 0.94071 0.80622 0.80569 0.88578 0.86292 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 8.79 71.24 0.63 -1.99 16 2 C -0.08 -2.65 5.88 -19.88 -0.12 -2.77 16 3 C -0.07 -2.69 5.91 -19.59 -0.12 -2.81 16 4 C -0.09 -2.92 8.18 71.24 0.58 -2.33 16 5 C 0.00 -0.05 5.01 -20.04 -0.10 -0.15 16 6 C -0.01 -0.59 5.28 42.42 0.22 -0.37 16 7 N -0.41 -17.41 9.10 -182.31 -1.66 -19.07 16 8 C -0.10 -3.86 11.22 84.90 0.95 -2.91 16 9 C 0.10 3.96 11.22 84.96 0.95 4.92 16 10 N -0.56 -26.76 5.31 -187.85 -1.00 -27.76 16 11 C 0.19 9.61 6.22 40.35 0.25 9.86 16 12 C -0.41 -21.37 8.29 23.36 0.19 -21.18 16 13 H 0.09 4.97 6.13 -2.91 -0.02 4.95 16 14 C 0.05 2.80 5.52 85.33 0.47 3.28 16 15 N -0.80 -40.88 13.92 21.86 0.30 -40.58 16 16 Si 1.04 46.97 25.41 68.60 1.74 48.72 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.31 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.28 -13.24 6.72 99.48 0.67 -12.57 16 20 C -0.10 -4.02 7.78 22.54 0.18 -3.84 16 21 C -0.12 -4.02 9.81 22.26 0.22 -3.80 16 22 C -0.05 -1.49 6.32 22.42 0.14 -1.34 16 23 Cl -0.06 -1.65 27.27 -2.72 -0.07 -1.73 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 1.73 6.78 -2.39 -0.02 1.71 16 26 H 0.08 1.69 6.89 -2.39 -0.02 1.67 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.08 2.18 6.91 -2.38 -0.02 2.17 16 29 H 0.04 1.54 6.57 -2.39 -0.02 1.53 16 30 H 0.18 5.14 8.06 -2.91 -0.02 5.12 16 31 H 0.18 5.36 8.06 -2.91 -0.02 5.33 16 32 H 0.30 13.88 8.29 -92.71 -0.77 13.11 16 33 H 0.12 5.08 7.48 -2.91 -0.02 5.06 16 34 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -58.49 296.88 4.87 -53.62 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.10 Total: 12.23 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 4.46 Total: -25.43 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.35 Total: -87.41 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.74 Total: 48.72 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.73 kcal Total: -58.49 4.87 -53.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245686331.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.107 kcal (2) G-P(sol) polarization free energy of solvation -58.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds