Wall clock time and date at job start Tue Mar 31 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37893 * 119.93407 * 2 1 4 4 C 1.50700 * 120.07199 * 0.02562 * 3 2 1 5 5 C 1.39662 * 119.86178 * 180.25015 * 3 2 1 6 6 C 1.47902 * 120.13379 * 179.79037 * 5 3 2 7 7 C 1.40454 * 120.79438 * 129.72226 * 6 5 3 8 8 N 1.31581 * 119.09159 * 179.97438 * 7 6 5 9 9 C 1.33641 * 120.83364 * 0.02562 * 8 7 6 10 10 C 1.41069 * 119.13231 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00139 * 353.60814 * 10 9 8 12 12 C 1.40141 * 119.99990 * 173.61969 * 10 9 8 13 13 N 1.30651 * 120.00254 * 6.33253 * 12 10 9 14 14 Si 1.86806 * 119.99618 * 186.33667 * 12 10 9 15 15 H 1.48500 * 109.47037 * 94.98420 * 14 12 10 16 16 H 1.48502 * 109.46944 * 214.98232 * 14 12 10 17 17 H 1.48503 * 109.47349 * 334.98134 * 14 12 10 18 18 N 1.33651 * 121.73927 * 359.97438 * 9 8 7 19 19 C 1.31580 * 120.82873 * 359.97438 * 18 9 8 20 20 C 1.39704 * 119.73171 * 359.50847 * 5 3 2 21 21 C 1.37858 * 119.86116 * 0.25753 * 20 5 3 22 22 C 1.38527 * 119.92870 * 179.75772 * 2 1 3 23 23 Cl 1.73604 * 119.86521 * 359.96510 * 22 2 1 24 24 H 1.08994 * 109.47091 * 270.24047 * 1 2 3 25 25 H 1.09003 * 109.46594 * 30.23951 * 1 2 3 26 26 H 1.09005 * 109.47026 * 150.23225 * 1 2 3 27 27 H 1.09001 * 109.47080 * 270.23477 * 4 3 2 28 28 H 1.09002 * 109.46964 * 30.22879 * 4 3 2 29 29 H 1.08997 * 109.47288 * 150.23204 * 4 3 2 30 30 H 1.08003 * 120.44781 * 0.25291 * 7 6 5 31 31 H 0.97004 * 120.00629 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.45575 * 179.97438 * 19 18 9 33 33 H 1.07995 * 120.06934 * 180.27401 * 20 5 3 34 34 H 1.07992 * 119.92978 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1950 0.0000 4 6 1.4418 2.5002 0.0006 5 6 3.5917 1.1932 -0.0053 6 6 4.3358 2.4714 -0.0100 7 6 5.3675 2.7063 0.9137 8 7 6.0078 3.8553 0.8792 9 6 5.6870 4.7915 -0.0188 10 6 6.3974 6.0103 -0.0241 11 1 7.1168 6.2193 0.7538 12 6 6.1695 6.9498 -1.0386 13 7 5.2140 6.7539 -1.9078 14 14 7.2321 8.4823 -1.1481 15 1 8.3440 8.2464 -2.1037 16 1 6.4075 9.6237 -1.6200 17 1 7.7893 8.7952 0.1924 18 7 4.7115 4.6033 -0.9128 19 6 4.0284 3.4790 -0.9389 20 6 4.2831 -0.0208 -0.0001 21 6 3.5839 -1.2088 0.0047 22 6 2.1982 -1.2005 0.0051 23 17 1.3248 -2.7008 0.0123 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5176 26 1 -0.3633 -0.8921 -0.5102 27 1 1.2561 2.8130 -1.0269 28 1 0.4913 2.3708 0.5183 29 1 2.0329 3.2607 0.5107 30 1 5.6345 1.9523 1.6395 31 1 5.0564 7.4041 -2.6103 32 1 3.2411 3.3334 -1.6637 33 1 5.3630 -0.0285 0.0003 34 1 4.1172 -2.1479 0.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245688954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:09 Heat of formation + Delta-G solvation = 45.300050 kcal Electronic energy + Delta-G solvation = -19468.938424 eV Core-core repulsion = 16391.819937 eV Total energy + Delta-G solvation = -3077.118487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.70902 -38.55732 -36.32464 -34.10546 -33.27519 -32.56505 -31.78483 -29.54763 -27.60319 -26.27798 -25.85288 -22.91866 -22.37783 -20.65100 -20.31827 -17.99419 -16.32183 -16.24812 -15.61436 -15.17360 -14.91107 -14.55890 -14.16741 -13.34036 -13.05930 -12.90580 -12.79794 -12.63170 -12.47939 -12.30770 -12.13073 -12.02550 -11.42676 -11.41142 -11.28870 -10.99012 -10.91188 -10.85644 -10.49281 -10.39477 -9.62583 -9.25385 -9.23566 -8.62784 -8.37911 -7.69441 -7.34712 -6.71284 -4.87040 1.35468 1.57633 2.35038 2.47624 2.87813 2.96325 3.00824 3.01861 3.75565 3.93019 4.48700 4.97042 4.99682 5.27002 5.39175 5.52925 5.66633 5.67541 5.70800 5.78535 5.80170 5.84653 5.94322 5.99981 6.13616 6.19580 6.26696 6.48423 6.51771 6.62991 6.74464 6.85292 7.00878 7.16930 7.24107 7.51719 8.00089 8.32708 8.40197 8.95852 9.93751 10.11845 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040383 B = 0.003558 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.186068 B = 7868.325035 C = 8292.009367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.083 4.083 4 C -0.110 4.110 5 C 0.037 3.963 6 C -0.334 4.334 7 C 0.189 3.811 8 N -0.593 5.593 9 C 0.382 3.618 10 C -0.382 4.382 11 H 0.096 0.904 12 C 0.062 3.938 13 N -0.699 5.699 14 Si 0.921 3.079 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.257 1.257 18 N -0.508 5.508 19 C 0.186 3.814 20 C -0.121 4.121 21 C -0.107 4.107 22 C -0.059 4.059 23 Cl -0.090 7.090 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.279 0.721 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 -9.283 0.870 11.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.084 4.084 4 C -0.167 4.167 5 C 0.035 3.965 6 C -0.344 4.344 7 C 0.014 3.986 8 N -0.312 5.312 9 C 0.150 3.850 10 C -0.415 4.415 11 H 0.114 0.886 12 C -0.166 4.166 13 N -0.319 5.319 14 Si 0.744 3.256 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.181 1.181 18 N -0.224 5.224 19 C 0.009 3.991 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.085 4.085 23 Cl -0.061 7.061 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.270 -8.256 0.664 10.389 hybrid contribution -0.112 -0.585 -0.153 0.615 sum -6.382 -8.841 0.511 10.916 Atomic orbital electron populations 1.20852 0.91020 1.03031 1.02418 1.19420 0.96063 0.90898 1.01017 1.19808 0.93071 0.94082 1.01448 1.20834 0.99221 0.94384 1.02225 1.18694 0.91428 0.92644 0.93746 1.19643 1.08375 0.97357 1.09052 1.22638 0.88779 0.93716 0.93455 1.68658 1.31355 1.03049 1.28118 1.19940 0.88492 0.92108 0.84509 1.19475 1.17178 0.96868 1.08025 0.88602 1.26202 0.95406 1.00145 0.94858 1.70111 1.21443 1.31779 1.08558 0.86078 0.79962 0.79449 0.80104 1.19139 1.19786 1.18086 1.69367 1.08656 1.19671 1.24739 1.23035 0.94798 0.88239 0.93045 1.21225 0.99862 0.90927 1.01940 1.20822 0.91678 0.98737 1.01363 1.20650 0.92023 0.85671 1.10189 1.98309 1.77070 1.33470 1.97255 0.91164 0.91074 0.91289 0.91256 0.92093 0.90615 0.85294 0.90991 0.85372 0.85547 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.78 36.01 0.32 -1.05 16 2 C -0.07 -1.06 5.88 -104.64 -0.62 -1.68 16 3 C -0.08 -1.34 5.89 -104.22 -0.61 -1.95 16 4 C -0.11 -1.65 7.66 36.01 0.28 -1.38 16 5 C 0.04 0.65 5.52 -104.86 -0.58 0.07 16 6 C -0.33 -6.94 4.75 -104.28 -0.50 -7.44 16 7 C 0.19 4.15 10.85 -16.83 -0.18 3.96 16 8 N -0.59 -15.10 10.34 -12.41 -0.13 -15.23 16 9 C 0.38 10.33 7.35 -158.17 -1.16 9.17 16 10 C -0.38 -9.99 9.35 -37.80 -0.35 -10.35 16 11 H 0.10 2.41 7.86 -52.49 -0.41 2.00 16 12 C 0.06 1.50 5.49 -17.34 -0.10 1.40 16 13 N -0.70 -17.43 11.43 55.56 0.64 -16.79 16 14 Si 0.92 17.56 29.57 -169.99 -5.03 12.53 16 15 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 16 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 17 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 18 N -0.51 -13.35 7.86 -12.41 -0.10 -13.44 16 19 C 0.19 4.20 9.24 -16.83 -0.16 4.04 16 20 C -0.12 -1.91 9.56 -39.17 -0.37 -2.29 16 21 C -0.11 -1.53 9.81 -39.60 -0.39 -1.92 16 22 C -0.06 -0.84 6.32 -39.35 -0.25 -1.09 16 23 Cl -0.09 -1.12 27.27 -51.86 -1.41 -2.54 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.77 6.71 -51.93 -0.35 0.42 16 26 H 0.07 0.76 6.89 -51.93 -0.36 0.40 16 27 H 0.07 0.99 7.55 -51.93 -0.39 0.60 16 28 H 0.06 0.77 6.71 -51.93 -0.35 0.42 16 29 H 0.08 1.32 6.48 -51.93 -0.34 0.98 16 30 H 0.13 2.44 8.06 -52.48 -0.42 2.01 16 31 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 32 H 0.13 2.62 6.97 -52.49 -0.37 2.25 16 33 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -27.73 303.99 -9.51 -37.24 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.39 Total: 4.13 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -4.67 Total: -10.49 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.41 Total: -45.46 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.41 Total: -2.54 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.73 -9.51 -37.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245688954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.538 kcal (2) G-P(sol) polarization free energy of solvation -27.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds