Wall clock time and date at job start Tue Mar 31 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37893 * 119.93407 * 2 1 4 4 C 1.50700 * 120.07199 * 0.02562 * 3 2 1 5 5 C 1.39662 * 119.86178 * 180.25015 * 3 2 1 6 6 C 1.47902 * 120.13379 * 179.79037 * 5 3 2 7 7 C 1.40454 * 120.79438 * 129.72226 * 6 5 3 8 8 N 1.31581 * 119.09159 * 179.97438 * 7 6 5 9 9 C 1.33641 * 120.83364 * 0.02562 * 8 7 6 10 10 C 1.41069 * 119.13231 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00139 * 353.60814 * 10 9 8 12 12 C 1.40141 * 119.99990 * 173.61969 * 10 9 8 13 13 N 1.30651 * 120.00254 * 6.33253 * 12 10 9 14 14 Si 1.86806 * 119.99618 * 186.33667 * 12 10 9 15 15 H 1.48500 * 109.47037 * 94.98420 * 14 12 10 16 16 H 1.48502 * 109.46944 * 214.98232 * 14 12 10 17 17 H 1.48503 * 109.47349 * 334.98134 * 14 12 10 18 18 N 1.33651 * 121.73927 * 359.97438 * 9 8 7 19 19 C 1.31580 * 120.82873 * 359.97438 * 18 9 8 20 20 C 1.39704 * 119.73171 * 359.50847 * 5 3 2 21 21 C 1.37858 * 119.86116 * 0.25753 * 20 5 3 22 22 C 1.38527 * 119.92870 * 179.75772 * 2 1 3 23 23 Cl 1.73604 * 119.86521 * 359.96510 * 22 2 1 24 24 H 1.08994 * 109.47091 * 270.24047 * 1 2 3 25 25 H 1.09003 * 109.46594 * 30.23951 * 1 2 3 26 26 H 1.09005 * 109.47026 * 150.23225 * 1 2 3 27 27 H 1.09001 * 109.47080 * 270.23477 * 4 3 2 28 28 H 1.09002 * 109.46964 * 30.22879 * 4 3 2 29 29 H 1.08997 * 109.47288 * 150.23204 * 4 3 2 30 30 H 1.08003 * 120.44781 * 0.25291 * 7 6 5 31 31 H 0.97004 * 120.00629 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.45575 * 179.97438 * 19 18 9 33 33 H 1.07995 * 120.06934 * 180.27401 * 20 5 3 34 34 H 1.07992 * 119.92978 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1950 0.0000 4 6 1.4418 2.5002 0.0006 5 6 3.5917 1.1932 -0.0053 6 6 4.3358 2.4714 -0.0100 7 6 5.3675 2.7063 0.9137 8 7 6.0078 3.8553 0.8792 9 6 5.6870 4.7915 -0.0188 10 6 6.3974 6.0103 -0.0241 11 1 7.1168 6.2193 0.7538 12 6 6.1695 6.9498 -1.0386 13 7 5.2140 6.7539 -1.9078 14 14 7.2321 8.4823 -1.1481 15 1 8.3440 8.2464 -2.1037 16 1 6.4075 9.6237 -1.6200 17 1 7.7893 8.7952 0.1924 18 7 4.7115 4.6033 -0.9128 19 6 4.0284 3.4790 -0.9389 20 6 4.2831 -0.0208 -0.0001 21 6 3.5839 -1.2088 0.0047 22 6 2.1982 -1.2005 0.0051 23 17 1.3248 -2.7008 0.0123 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5176 26 1 -0.3633 -0.8921 -0.5102 27 1 1.2561 2.8130 -1.0269 28 1 0.4913 2.3708 0.5183 29 1 2.0329 3.2607 0.5107 30 1 5.6345 1.9523 1.6395 31 1 5.0564 7.4041 -2.6103 32 1 3.2411 3.3334 -1.6637 33 1 5.3630 -0.0285 0.0003 34 1 4.1172 -2.1479 0.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245688954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:09 Heat of formation + Delta-G solvation = 31.964217 kcal Electronic energy + Delta-G solvation = -19469.516709 eV Core-core repulsion = 16391.819937 eV Total energy + Delta-G solvation = -3077.696772 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21479 -40.09254 -37.43710 -35.83844 -34.47627 -34.10852 -33.53209 -31.11519 -28.97759 -27.62228 -27.23240 -24.67175 -24.05846 -21.90712 -21.69553 -19.80430 -18.03504 -17.46790 -17.09229 -16.71099 -16.37103 -16.11847 -15.31968 -14.85367 -14.58385 -14.52689 -14.06291 -13.95149 -13.70043 -13.59210 -13.25833 -13.18071 -13.10791 -12.94555 -12.67593 -12.57836 -12.16824 -12.00671 -11.95144 -11.60091 -11.34115 -11.11819 -10.99353 -10.14493 -9.54779 -9.41100 -8.99473 -8.48843 -6.75549 0.01190 0.38472 0.81446 1.05436 1.22722 1.40133 1.50823 1.56200 2.18235 2.61147 2.77680 3.78775 3.88166 3.91184 3.96190 4.00079 4.01099 4.20496 4.35355 4.38404 4.59253 4.70468 4.75299 4.80822 4.86615 4.95299 4.98229 5.09494 5.14776 5.28773 5.31915 5.34962 5.48542 5.76652 5.79819 5.95253 6.10532 6.46986 6.56185 7.13602 8.16453 8.30346 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040383 B = 0.003558 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.186068 B = 7868.325035 C = 8292.009367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.087 4.087 4 C -0.106 4.106 5 C 0.006 3.994 6 C -0.307 4.307 7 C 0.174 3.826 8 N -0.620 5.620 9 C 0.357 3.643 10 C -0.425 4.425 11 H 0.091 0.909 12 C 0.024 3.976 13 N -0.736 5.736 14 Si 1.000 3.000 15 H -0.261 1.261 16 H -0.260 1.260 17 H -0.255 1.255 18 N -0.539 5.539 19 C 0.172 3.828 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.058 4.058 23 Cl -0.068 7.068 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.159 0.841 31 H 0.287 0.713 32 H 0.145 0.855 33 H 0.132 0.868 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -10.915 0.804 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.087 4.087 4 C -0.163 4.163 5 C 0.004 3.996 6 C -0.317 4.317 7 C 0.001 3.999 8 N -0.339 5.339 9 C 0.123 3.877 10 C -0.459 4.459 11 H 0.109 0.891 12 C -0.201 4.201 13 N -0.358 5.358 14 Si 0.818 3.182 15 H -0.186 1.186 16 H -0.184 1.184 17 H -0.179 1.179 18 N -0.256 5.256 19 C -0.003 4.003 20 C -0.139 4.139 21 C -0.123 4.123 22 C -0.084 4.084 23 Cl -0.039 7.039 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.176 0.824 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.450 -9.959 0.605 12.452 hybrid contribution 0.053 -0.432 -0.090 0.444 sum -7.397 -10.391 0.515 12.765 Atomic orbital electron populations 1.20927 0.88855 1.04011 1.03506 1.19690 0.97650 0.90255 1.00001 1.19900 0.92492 0.95127 1.01230 1.20797 0.99789 0.93156 1.02519 1.18625 0.92225 0.91725 0.97040 1.19841 1.06970 0.98024 1.06834 1.23173 0.89021 0.93394 0.94262 1.68661 1.32697 1.04106 1.28455 1.20301 0.89176 0.92986 0.85285 1.19745 1.18482 0.98091 1.09580 0.89076 1.27097 0.96437 1.02861 0.93685 1.70163 1.22945 1.33334 1.09315 0.84935 0.77988 0.75192 0.80046 1.18582 1.18438 1.17876 1.69316 1.09397 1.21469 1.25398 1.23383 0.94872 0.88169 0.93842 1.21290 1.00279 0.90828 1.01541 1.21055 0.91888 0.99070 1.00295 1.20872 0.92388 0.86633 1.08532 1.98324 1.76567 1.31958 1.97052 0.89890 0.90092 0.90411 0.90713 0.89531 0.93662 0.82437 0.90158 0.83774 0.85045 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.78 71.24 0.63 -1.70 16 2 C -0.08 -1.97 5.88 -19.88 -0.12 -2.08 16 3 C -0.09 -2.65 5.89 -19.60 -0.12 -2.76 16 4 C -0.11 -3.07 7.66 71.24 0.55 -2.53 16 5 C 0.01 0.19 5.52 -20.02 -0.11 0.08 16 6 C -0.31 -12.90 4.75 -19.64 -0.09 -12.99 16 7 C 0.17 7.77 10.85 85.27 0.93 8.70 16 8 N -0.62 -32.74 10.34 -193.17 -2.00 -34.74 16 9 C 0.36 20.21 7.35 134.90 0.99 21.20 16 10 C -0.42 -23.30 9.35 23.43 0.22 -23.08 16 11 H 0.09 4.84 7.86 -2.91 -0.02 4.81 16 12 C 0.02 1.18 5.49 85.33 0.47 1.65 16 13 N -0.74 -37.95 11.43 21.85 0.25 -37.70 16 14 Si 1.00 36.66 29.57 68.60 2.03 38.68 16 15 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 16 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 17 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 18 N -0.54 -29.50 7.86 -193.18 -1.52 -31.02 16 19 C 0.17 8.00 9.24 85.27 0.79 8.79 16 20 C -0.12 -3.61 9.56 22.53 0.22 -3.39 16 21 C -0.10 -2.67 9.81 22.26 0.22 -2.46 16 22 C -0.06 -1.47 6.32 22.42 0.14 -1.33 16 23 Cl -0.07 -1.46 27.27 -2.72 -0.07 -1.53 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.47 6.71 -2.39 -0.02 1.45 16 26 H 0.08 1.43 6.89 -2.38 -0.02 1.41 16 27 H 0.07 2.06 7.55 -2.39 -0.02 2.04 16 28 H 0.09 2.01 6.71 -2.39 -0.02 2.00 16 29 H 0.04 1.59 6.48 -2.39 -0.02 1.57 16 30 H 0.16 5.92 8.06 -2.91 -0.02 5.89 16 31 H 0.29 13.12 8.29 -92.71 -0.77 12.35 16 32 H 0.15 6.02 6.97 -2.91 -0.02 6.00 16 33 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -62.19 303.99 4.53 -57.66 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 1.14 Total: 20.54 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.70 Total: -11.91 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -3.26 Total: -103.45 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.53 kcal Total: -62.19 4.53 -57.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245688954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.629 kcal (2) G-P(sol) polarization free energy of solvation -62.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds