Wall clock time and date at job start Tue Mar 31 2020 06:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76206 * 102.99836 * 2 1 4 4 C 1.39149 * 119.97727 * 0.02562 * 3 2 1 5 5 C 1.38184 * 120.24158 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.20317 * 359.77386 * 5 4 3 7 7 F 1.35101 * 120.02567 * 180.25127 * 6 5 4 8 8 C 1.39852 * 119.95198 * 0.48099 * 6 5 4 9 9 C 1.47934 * 120.11944 * 179.76835 * 8 6 5 10 10 C 1.39964 * 119.88523 * 129.45055 * 9 8 6 11 11 C 1.36241 * 120.11960 * 180.27703 * 10 9 8 12 12 C 1.40939 * 119.87993 * 359.97438 * 11 10 9 13 13 C 1.41007 * 120.11597 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99816 * 24.70165 * 13 12 11 15 15 C 1.39991 * 120.00158 * 204.70786 * 13 12 11 16 16 N 1.30812 * 119.99668 * 17.96562 * 15 13 12 17 17 Si 1.86799 * 120.00258 * 197.96792 * 15 13 12 18 18 H 1.48507 * 109.46814 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47140 * 119.99447 * 17 15 13 20 20 H 1.48496 * 109.47235 * 240.00059 * 17 15 13 21 21 C 1.40945 * 119.76911 * 0.02562 * 12 11 10 22 22 C 1.36232 * 119.87774 * 0.02562 * 21 12 11 23 23 C 1.38595 * 119.98159 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47220 * 60.00083 * 1 2 3 25 25 H 1.09004 * 109.46596 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47439 * 299.99425 * 1 2 3 27 27 H 1.08003 * 119.87855 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.89801 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.93873 * 0.25814 * 10 9 8 30 30 H 1.07999 * 120.05477 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99687 * 180.02562 * 16 15 13 32 32 H 1.08000 * 120.05978 * 179.97438 * 21 12 11 33 33 H 1.08003 * 119.93558 * 180.02562 * 22 21 12 34 34 H 1.07999 * 120.09529 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1922 2.6655 0.0005 5 6 1.4968 4.0133 0.0011 6 6 2.8155 4.4283 0.0058 7 9 3.1092 5.7470 0.0114 8 6 3.8453 3.4821 -0.0001 9 6 5.2577 3.9221 -0.0003 10 6 6.1543 3.3890 0.9330 11 6 7.4548 3.7950 0.9408 12 6 7.8969 4.7532 0.0065 13 6 9.2419 5.1765 0.0097 14 1 10.0097 4.5327 0.4129 15 6 9.5820 6.4313 -0.5094 16 7 8.6594 7.3446 -0.6700 17 14 11.3533 6.8015 -0.9729 18 1 12.1966 5.6108 -0.6961 19 1 11.4274 7.1360 -2.4178 20 1 11.8443 7.9520 -0.1726 21 6 6.9898 5.2868 -0.9311 22 6 5.6913 4.8747 -0.9296 23 6 3.5358 2.1217 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.1602 2.3471 0.0014 28 1 0.7022 4.7448 0.0019 29 1 5.8145 2.6548 1.6483 30 1 8.1457 3.3833 1.6616 31 1 8.8950 8.2140 -1.0301 32 1 7.3234 6.0216 -1.6489 33 1 4.9956 5.2827 -1.6479 34 1 4.3267 1.3863 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245748075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:30 Heat of formation + Delta-G solvation = -12.171141 kcal Electronic energy + Delta-G solvation = -19117.586483 eV Core-core repulsion = 16020.099603 eV Total energy + Delta-G solvation = -3097.486880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.29973 -38.76213 -37.30295 -34.00898 -31.78331 -30.45665 -29.67725 -29.36273 -28.42325 -25.29552 -22.72066 -22.38795 -20.76581 -20.29078 -17.46863 -17.40925 -16.97631 -16.00192 -15.45320 -15.05028 -14.92084 -14.65238 -14.06283 -13.91884 -13.63193 -13.38881 -12.96232 -12.92477 -12.66495 -12.30650 -12.17455 -12.04708 -11.79183 -11.35691 -11.25268 -11.04154 -10.61477 -10.47692 -10.26550 -9.79154 -9.55019 -9.39591 -9.26842 -8.65158 -7.62259 -7.39235 -7.18930 -6.91175 -4.46060 1.26363 1.42367 1.49987 2.37896 2.65052 3.00421 3.05475 3.07782 3.09217 3.81071 3.83453 4.49126 4.64747 4.87602 4.87675 4.96949 5.10490 5.39713 5.46707 5.57715 5.62416 6.02176 6.07992 6.22223 6.27264 6.37567 6.40663 6.62563 6.86902 6.93535 7.11202 7.18495 7.23945 7.52485 7.78888 7.94350 8.00727 8.16153 8.50873 8.74021 8.85175 10.01145 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.032795 B = 0.003591 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.573987 B = 7794.972408 C = 8422.483076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.124 6.124 3 C -0.093 4.093 4 C -0.135 4.135 5 C -0.134 4.134 6 C 0.084 3.916 7 F -0.132 7.132 8 C 0.005 3.995 9 C -0.216 4.216 10 C -0.058 4.058 11 C -0.231 4.231 12 C 0.121 3.879 13 C -0.449 4.449 14 H 0.082 0.918 15 C 0.074 3.926 16 N -0.778 5.778 17 Si 0.911 3.089 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.273 1.273 21 C -0.171 4.171 22 C -0.065 4.065 23 C -0.081 4.081 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.284 0.716 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 -7.768 -0.144 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.117 5.883 3 C -0.205 4.205 4 C -0.158 4.158 5 C -0.155 4.155 6 C 0.063 3.937 7 F -0.111 7.111 8 C 0.002 3.998 9 C -0.217 4.217 10 C -0.076 4.076 11 C -0.250 4.250 12 C 0.118 3.882 13 C -0.477 4.477 14 H 0.100 0.900 15 C -0.146 4.146 16 N -0.402 5.402 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.191 4.191 22 C -0.083 4.083 23 C -0.105 4.105 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.509 -8.517 -0.210 14.319 hybrid contribution -0.151 1.737 -0.169 1.752 sum -11.660 -6.780 -0.379 13.493 Atomic orbital electron populations 1.23634 0.95333 1.06734 1.05542 1.85451 1.05783 1.03809 1.93242 1.21533 0.96555 0.95951 1.06453 1.20781 0.97912 0.91996 1.05150 1.20840 0.94795 0.96295 1.03547 1.17915 0.92888 0.78195 1.04742 1.91501 1.94215 1.31601 1.93749 1.19002 0.93534 0.91274 0.95940 1.17830 0.90032 1.08084 1.05752 1.20270 0.93427 0.97465 0.96437 1.20648 0.94995 1.06640 1.02751 1.17724 0.93081 0.89102 0.88320 1.19718 0.93848 1.00396 1.33735 0.89966 1.26032 0.99969 0.95733 0.92898 1.69839 1.35466 1.04131 1.30719 0.86214 0.81875 0.79369 0.79085 1.18183 1.19498 1.19806 1.20964 0.92845 1.03913 1.01330 1.20404 0.95913 0.95154 0.96859 1.20792 0.93903 0.94903 1.00876 0.89870 0.87686 0.89870 0.85789 0.85137 0.89148 0.88646 0.90512 0.86313 0.89394 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.14 101.05 0.92 -0.23 16 2 S -0.12 -1.51 22.56 -107.50 -2.43 -3.93 16 3 C -0.09 -1.37 6.10 -39.11 -0.24 -1.61 16 4 C -0.13 -1.82 9.36 -39.26 -0.37 -2.18 16 5 C -0.13 -1.99 10.00 -39.60 -0.40 -2.39 16 6 C 0.08 1.55 7.16 -38.98 -0.28 1.27 16 7 F -0.13 -2.68 15.90 2.25 0.04 -2.64 16 8 C 0.01 0.10 5.47 -104.85 -0.57 -0.47 16 9 C -0.22 -4.87 5.34 -104.63 -0.56 -5.43 16 10 C -0.06 -1.30 9.44 -39.65 -0.37 -1.67 16 11 C -0.23 -5.60 9.73 -39.28 -0.38 -5.98 16 12 C 0.12 3.16 5.57 -106.80 -0.60 2.57 16 13 C -0.45 -11.56 9.03 -37.88 -0.34 -11.91 16 14 H 0.08 2.02 7.91 -52.48 -0.42 1.61 16 15 C 0.07 1.79 5.13 -17.33 -0.09 1.70 16 16 N -0.78 -19.63 10.96 55.55 0.61 -19.02 16 17 Si 0.91 18.00 29.60 -169.99 -5.03 12.97 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 C -0.17 -4.44 8.63 -39.28 -0.34 -4.78 16 22 C -0.06 -1.56 8.78 -39.66 -0.35 -1.90 16 23 C -0.08 -1.40 9.24 -38.97 -0.36 -1.76 16 24 H 0.08 0.61 7.74 -51.93 -0.40 0.21 16 25 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 26 H 0.08 0.61 7.74 -51.93 -0.40 0.21 16 27 H 0.12 1.28 5.85 -52.48 -0.31 0.97 16 28 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.09 1.81 8.03 -52.49 -0.42 1.39 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 32 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 33 H 0.09 2.00 7.80 -52.48 -0.41 1.59 16 34 H 0.13 2.24 8.04 -52.49 -0.42 1.82 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -27.31 310.31 -9.96 -37.26 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -3.51 Total: 5.45 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: -4.32 Total: -34.77 kcal Atomic # 7 Polarization: -19.63 SS G_CDS: 0.61 Total: -19.02 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.43 Total: -3.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.31 -9.96 -37.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245748075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.093 kcal (2) G-P(sol) polarization free energy of solvation -27.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds