Wall clock time and date at job start Tue Mar 31 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76206 * 102.99836 * 2 1 4 4 C 1.39149 * 119.97727 * 0.02562 * 3 2 1 5 5 C 1.38184 * 120.24158 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.20317 * 359.77386 * 5 4 3 7 7 F 1.35101 * 120.02567 * 180.25127 * 6 5 4 8 8 C 1.39852 * 119.95198 * 0.48099 * 6 5 4 9 9 C 1.47934 * 120.11944 * 179.76835 * 8 6 5 10 10 C 1.39964 * 119.88523 * 129.45055 * 9 8 6 11 11 C 1.36241 * 120.11960 * 180.27703 * 10 9 8 12 12 C 1.40939 * 119.87993 * 359.97438 * 11 10 9 13 13 C 1.41007 * 120.11597 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99816 * 24.70165 * 13 12 11 15 15 C 1.39991 * 120.00158 * 204.70786 * 13 12 11 16 16 N 1.30812 * 119.99668 * 17.96562 * 15 13 12 17 17 Si 1.86799 * 120.00258 * 197.96792 * 15 13 12 18 18 H 1.48507 * 109.46814 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47140 * 119.99447 * 17 15 13 20 20 H 1.48496 * 109.47235 * 240.00059 * 17 15 13 21 21 C 1.40945 * 119.76911 * 0.02562 * 12 11 10 22 22 C 1.36232 * 119.87774 * 0.02562 * 21 12 11 23 23 C 1.38595 * 119.98159 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47220 * 60.00083 * 1 2 3 25 25 H 1.09004 * 109.46596 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47439 * 299.99425 * 1 2 3 27 27 H 1.08003 * 119.87855 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.89801 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.93873 * 0.25814 * 10 9 8 30 30 H 1.07999 * 120.05477 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99687 * 180.02562 * 16 15 13 32 32 H 1.08000 * 120.05978 * 179.97438 * 21 12 11 33 33 H 1.08003 * 119.93558 * 180.02562 * 22 21 12 34 34 H 1.07999 * 120.09529 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1922 2.6655 0.0005 5 6 1.4968 4.0133 0.0011 6 6 2.8155 4.4283 0.0058 7 9 3.1092 5.7470 0.0114 8 6 3.8453 3.4821 -0.0001 9 6 5.2577 3.9221 -0.0003 10 6 6.1543 3.3890 0.9330 11 6 7.4548 3.7950 0.9408 12 6 7.8969 4.7532 0.0065 13 6 9.2419 5.1765 0.0097 14 1 10.0097 4.5327 0.4129 15 6 9.5820 6.4313 -0.5094 16 7 8.6594 7.3446 -0.6700 17 14 11.3533 6.8015 -0.9729 18 1 12.1966 5.6108 -0.6961 19 1 11.4274 7.1360 -2.4178 20 1 11.8443 7.9520 -0.1726 21 6 6.9898 5.2868 -0.9311 22 6 5.6913 4.8747 -0.9296 23 6 3.5358 2.1217 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.1602 2.3471 0.0014 28 1 0.7022 4.7448 0.0019 29 1 5.8145 2.6548 1.6483 30 1 8.1457 3.3833 1.6616 31 1 8.8950 8.2140 -1.0301 32 1 7.3234 6.0216 -1.6489 33 1 4.9956 5.2827 -1.6479 34 1 4.3267 1.3863 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245748075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:29 Heat of formation + Delta-G solvation = -23.626561 kcal Electronic energy + Delta-G solvation = -19118.083227 eV Core-core repulsion = 16020.099603 eV Total energy + Delta-G solvation = -3097.983624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.77401 -40.21543 -38.98458 -35.79593 -33.32104 -31.79831 -31.34892 -30.74750 -29.54229 -27.01602 -24.13273 -23.83117 -22.58234 -21.95265 -19.32531 -18.74157 -18.23070 -17.40974 -17.16194 -16.52904 -16.30127 -15.79589 -15.67115 -15.21891 -14.98325 -14.59274 -14.47209 -14.22450 -13.95350 -13.75487 -13.59942 -13.54496 -13.24401 -12.93261 -12.77950 -12.68407 -12.29210 -12.01003 -11.57212 -11.37754 -11.20090 -11.13877 -10.49346 -10.13200 -9.53061 -9.11617 -8.72556 -8.31461 -6.39078 -0.05888 0.14336 0.55566 0.93389 1.13912 1.37173 1.48549 1.51952 1.53583 2.17131 2.46264 2.70811 3.36253 3.64867 3.78503 3.86772 4.12565 4.31070 4.34152 4.36291 4.37847 4.42940 4.73449 4.84980 4.89431 4.97121 5.06240 5.12203 5.13928 5.20029 5.32330 5.38133 5.63840 5.74686 5.98508 6.03132 6.11846 6.26974 6.59901 6.83524 6.94452 8.23408 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.032795 B = 0.003591 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.573987 B = 7794.972408 C = 8422.483076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.142 6.142 3 C -0.092 4.092 4 C -0.115 4.115 5 C -0.123 4.123 6 C 0.058 3.942 7 F -0.151 7.151 8 C -0.027 4.027 9 C -0.206 4.206 10 C -0.063 4.063 11 C -0.244 4.244 12 C 0.090 3.910 13 C -0.487 4.487 14 H 0.083 0.917 15 C 0.033 3.967 16 N -0.815 5.815 17 Si 0.988 3.012 18 H -0.255 1.255 19 H -0.263 1.263 20 H -0.264 1.264 21 C -0.193 4.193 22 C -0.075 4.075 23 C -0.088 4.088 24 H 0.096 0.904 25 H 0.127 0.873 26 H 0.097 0.903 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.292 0.708 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.843 -9.351 0.017 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.099 5.901 3 C -0.204 4.204 4 C -0.139 4.139 5 C -0.143 4.143 6 C 0.036 3.964 7 F -0.130 7.130 8 C -0.030 4.030 9 C -0.207 4.207 10 C -0.081 4.081 11 C -0.263 4.263 12 C 0.087 3.913 13 C -0.515 4.515 14 H 0.101 0.899 15 C -0.183 4.183 16 N -0.440 5.440 17 Si 0.807 3.193 18 H -0.178 1.178 19 H -0.188 1.188 20 H -0.189 1.189 21 C -0.212 4.212 22 C -0.094 4.094 23 C -0.111 4.111 24 H 0.115 0.885 25 H 0.146 0.854 26 H 0.116 0.884 27 H 0.185 0.815 28 H 0.180 0.820 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.240 -10.125 -0.041 17.473 hybrid contribution 0.316 2.010 -0.191 2.043 sum -13.924 -8.115 -0.232 16.118 Atomic orbital electron populations 1.23829 0.91017 1.08759 1.06896 1.85643 1.10462 1.01359 1.92637 1.21782 0.95815 0.98156 1.04658 1.21304 0.99622 0.90968 1.01982 1.21194 0.93738 0.97752 1.01612 1.18248 0.94337 0.77248 1.06533 1.91452 1.94523 1.32891 1.94147 1.18901 0.92036 0.92798 0.99237 1.18171 0.92080 1.06327 1.04147 1.20559 0.92876 0.97821 0.96820 1.20872 0.96089 1.06627 1.02740 1.18047 0.93810 0.90262 0.89176 1.19945 0.93894 1.01596 1.36040 0.89897 1.26918 1.04496 0.94893 0.92032 1.69891 1.37763 1.04789 1.31566 0.85079 0.76025 0.79259 0.78896 1.17802 1.18785 1.18860 1.20921 0.93853 1.04656 1.01771 1.20549 0.95355 0.95868 0.97599 1.20761 0.95402 0.93689 1.01257 0.88480 0.85425 0.88425 0.81507 0.81976 0.86570 0.87684 0.89759 0.87945 0.88912 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.14 113.37 1.04 -0.41 16 2 S -0.14 -2.99 22.56 -56.49 -1.27 -4.27 16 3 C -0.09 -2.44 6.10 22.57 0.14 -2.30 16 4 C -0.12 -2.59 9.36 22.48 0.21 -2.38 16 5 C -0.12 -3.24 10.00 22.26 0.22 -3.02 16 6 C 0.06 2.09 7.16 22.66 0.16 2.25 16 7 F -0.15 -6.21 15.90 44.97 0.72 -5.50 16 8 C -0.03 -1.06 5.47 -20.01 -0.11 -1.17 16 9 C -0.21 -9.59 5.34 -19.87 -0.11 -9.70 16 10 C -0.06 -2.90 9.44 22.22 0.21 -2.69 16 11 C -0.24 -12.32 9.73 22.47 0.22 -12.10 16 12 C 0.09 4.97 5.57 -21.28 -0.12 4.85 16 13 C -0.49 -26.35 9.03 23.37 0.21 -26.14 16 14 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 15 C 0.03 1.67 5.13 85.27 0.44 2.10 16 16 N -0.82 -43.11 10.96 21.83 0.24 -42.87 16 17 Si 0.99 37.85 29.60 68.60 2.03 39.88 16 18 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 19 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 21 C -0.19 -10.63 8.63 22.47 0.19 -10.44 16 22 C -0.08 -3.81 8.78 22.22 0.20 -3.61 16 23 C -0.09 -2.92 9.24 22.66 0.21 -2.72 16 24 H 0.10 0.84 7.74 -2.39 -0.02 0.82 16 25 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.83 7.74 -2.39 -0.02 0.81 16 27 H 0.17 2.34 5.85 -2.91 -0.02 2.32 16 28 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 29 H 0.12 4.65 8.03 -2.91 -0.02 4.63 16 30 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 31 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 32 H 0.10 5.86 6.16 -2.91 -0.02 5.84 16 33 H 0.09 4.46 7.80 -2.91 -0.02 4.43 16 34 H 0.13 4.32 8.04 -2.91 -0.02 4.29 16 Total: -1.00 -63.47 310.31 5.94 -57.53 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 1.12 Total: 22.68 kcal Atomic # 6 Polarization: -70.56 SS G_CDS: 3.11 Total: -67.45 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.24 Total: -42.87 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.72 Total: -5.50 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -1.27 Total: -4.27 kcal Total: -63.47 5.94 -57.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245748075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.900 kcal (2) G-P(sol) polarization free energy of solvation -63.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds