Wall clock time and date at job start Tue Mar 31 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76199 * 103.00218 * 2 1 4 4 C 1.39149 * 119.97428 * 0.02562 * 3 2 1 5 5 C 1.38193 * 120.24819 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.21005 * 0.25278 * 5 4 3 7 7 F 1.35103 * 120.02772 * 179.72628 * 6 5 4 8 8 C 1.39903 * 119.94888 * 359.45071 * 6 5 4 9 9 C 1.47811 * 120.12496 * 180.27496 * 8 6 5 10 10 C 1.39202 * 120.33741 * 245.01892 * 9 8 6 11 11 C 1.38058 * 119.98384 * 179.70248 * 10 9 8 12 12 C 1.38948 * 120.67451 * 0.60023 * 11 10 9 13 13 C 1.36415 * 120.69099 * 359.68124 * 12 11 10 14 14 C 1.40755 * 119.99404 * 0.02562 * 13 12 11 15 15 C 1.40862 * 120.33356 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99420 * 149.82072 * 15 14 13 17 17 C 1.40054 * 120.00215 * 329.82310 * 15 14 13 18 18 N 1.30781 * 119.99718 * 161.91982 * 17 15 14 19 19 Si 1.86790 * 119.99857 * 341.92066 * 17 15 14 20 20 H 1.48501 * 109.47359 * 95.38985 * 19 17 15 21 21 H 1.48501 * 109.47154 * 215.39018 * 19 17 15 22 22 H 1.48496 * 109.47625 * 335.39081 * 19 17 15 23 23 C 1.38581 * 119.97507 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47026 * 299.99926 * 1 2 3 25 25 H 1.08999 * 109.46857 * 59.99941 * 1 2 3 26 26 H 1.09002 * 109.47195 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.87757 * 0.02562 * 4 3 2 28 28 H 1.08008 * 119.89248 * 179.97438 * 5 4 3 29 29 H 1.08003 * 120.00630 * 0.02562 * 10 9 8 30 30 H 1.08002 * 119.66229 * 180.32356 * 11 10 9 31 31 H 1.07995 * 119.64839 * 179.69668 * 12 11 10 32 32 H 1.08007 * 120.00330 * 179.97438 * 13 12 11 33 33 H 0.97008 * 119.99643 * 180.02562 * 18 17 15 34 34 H 1.07999 * 120.10296 * 359.96201 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1924 2.6654 0.0005 5 6 1.4969 4.0134 0.0000 6 6 2.8154 4.4286 -0.0063 7 9 3.1088 5.7474 -0.0124 8 6 3.8457 3.4822 -0.0006 9 6 5.2569 3.9220 -0.0012 10 6 6.0803 3.6415 -1.0880 11 6 7.3956 4.0610 -1.0835 12 6 7.9151 4.7532 0.0035 13 6 7.1345 5.0378 1.0854 14 6 5.7878 4.6290 1.1085 15 6 4.9751 4.9196 2.2217 16 1 3.9133 5.0680 2.0910 17 6 5.5439 5.0161 3.4979 18 7 4.8939 5.6185 4.4597 19 14 7.2309 4.2844 3.8262 20 1 8.2651 5.3404 3.6821 21 1 7.2727 3.7358 5.2055 22 1 7.4964 3.1955 2.8522 23 6 3.5359 2.1214 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.1604 2.3470 0.0014 28 1 0.7021 4.7447 0.0000 29 1 5.6888 3.1003 -1.9367 30 1 8.0284 3.8451 -1.9317 31 1 8.9477 5.0693 -0.0085 32 1 7.5499 5.5762 1.9245 33 1 5.2880 5.6856 5.3435 34 1 4.3267 1.3859 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245748639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:31 Heat of formation + Delta-G solvation = -20.735266 kcal Electronic energy + Delta-G solvation = -19918.285314 eV Core-core repulsion = 16820.427066 eV Total energy + Delta-G solvation = -3097.858248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.71735 -40.30081 -38.96989 -35.56932 -33.65781 -32.32477 -31.59638 -30.49652 -29.26133 -27.02890 -24.36700 -23.77070 -22.95697 -21.67727 -19.37747 -18.74285 -18.23249 -17.48149 -17.24257 -16.63512 -16.33665 -15.73400 -15.62383 -15.47623 -15.08666 -14.66885 -14.56760 -14.29347 -14.19322 -13.89544 -13.62119 -13.53171 -13.28183 -12.90780 -12.80090 -12.64787 -12.22568 -12.06531 -11.68632 -11.42178 -11.20001 -11.06994 -10.44515 -10.03283 -9.51185 -9.25306 -8.92942 -8.28042 -6.49115 0.02852 0.19978 0.55779 0.77685 0.87025 1.23111 1.37602 1.45687 1.51871 2.09041 2.51519 2.60810 3.40491 3.47196 3.79385 3.88864 4.12906 4.29486 4.32905 4.33300 4.38674 4.40363 4.71318 4.74708 4.82087 4.88543 4.97011 5.04361 5.12930 5.15606 5.28763 5.37033 5.56485 5.75575 5.84899 5.95253 6.00391 6.22883 6.39665 6.73097 6.81012 8.14561 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016173 B = 0.005969 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.878078 B = 4689.629342 C = 5005.911923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.139 6.139 3 C -0.097 4.097 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.072 3.928 7 F -0.151 7.151 8 C -0.020 4.020 9 C -0.188 4.188 10 C -0.064 4.064 11 C -0.231 4.231 12 C -0.077 4.077 13 C -0.250 4.250 14 C 0.091 3.909 15 C -0.467 4.467 16 H 0.063 0.937 17 C 0.048 3.952 18 N -0.842 5.842 19 Si 0.961 3.039 20 H -0.257 1.257 21 H -0.277 1.277 22 H -0.254 1.254 23 C -0.083 4.083 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.130 0.870 27 H 0.166 0.834 28 H 0.156 0.844 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.294 0.706 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 -9.369 -7.849 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.102 5.898 3 C -0.210 4.210 4 C -0.136 4.136 5 C -0.156 4.156 6 C 0.050 3.950 7 F -0.130 7.130 8 C -0.023 4.023 9 C -0.189 4.189 10 C -0.082 4.082 11 C -0.250 4.250 12 C -0.095 4.095 13 C -0.269 4.269 14 C 0.089 3.911 15 C -0.496 4.496 16 H 0.081 0.919 17 C -0.167 4.167 18 N -0.468 5.468 19 Si 0.785 3.215 20 H -0.182 1.182 21 H -0.203 1.203 22 H -0.177 1.177 23 C -0.106 4.106 24 H 0.110 0.890 25 H 0.117 0.883 26 H 0.148 0.852 27 H 0.184 0.816 28 H 0.174 0.826 29 H 0.141 0.859 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.823 -10.278 -7.573 14.032 hybrid contribution -0.142 1.734 0.710 1.879 sum -5.965 -8.544 -6.864 12.478 Atomic orbital electron populations 1.23821 0.91167 1.08762 1.06759 1.85467 1.10330 1.01145 1.92860 1.21745 0.95821 0.98210 1.05197 1.21261 0.99636 0.90894 1.01848 1.21186 0.93936 0.97884 1.02638 1.18291 0.94416 0.77398 1.04865 1.91438 1.94547 1.33074 1.93904 1.18774 0.92444 0.92533 0.98521 1.18756 0.92834 1.08514 0.98799 1.21027 0.93783 0.97456 0.95900 1.20793 0.95849 1.08024 1.00347 1.20823 0.99085 0.96422 0.93174 1.20896 0.95833 1.09520 1.00676 1.17805 0.92170 0.88568 0.92602 1.19438 0.96501 1.41950 0.91694 0.91899 1.26853 1.02361 0.91990 0.95482 1.69710 1.41050 1.31724 1.04309 0.85555 0.77995 0.80516 0.77484 1.18214 1.20341 1.17749 1.20773 0.95365 0.93685 1.00825 0.88971 0.88294 0.85214 0.81643 0.82632 0.85944 0.84844 0.85411 0.88504 0.89576 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.15 113.37 1.04 -0.89 16 2 S -0.14 -3.40 22.56 -56.49 -1.27 -4.68 16 3 C -0.10 -3.06 6.10 22.57 0.14 -2.92 16 4 C -0.11 -3.21 9.36 22.48 0.21 -3.00 16 5 C -0.14 -4.56 10.00 22.26 0.22 -4.34 16 6 C 0.07 3.07 5.96 22.67 0.14 3.21 16 7 F -0.15 -7.29 15.74 44.97 0.71 -6.58 16 8 C -0.02 -0.88 4.68 -20.02 -0.09 -0.98 16 9 C -0.19 -8.90 5.05 -19.61 -0.10 -9.00 16 10 C -0.06 -2.62 9.73 22.46 0.22 -2.40 16 11 C -0.23 -8.90 10.03 22.40 0.22 -8.68 16 12 C -0.08 -3.17 9.96 22.01 0.22 -2.95 16 13 C -0.25 -12.11 7.12 22.46 0.16 -11.95 16 14 C 0.09 4.79 5.00 -21.12 -0.11 4.69 16 15 C -0.47 -26.72 8.62 23.35 0.20 -26.52 16 16 H 0.06 3.89 5.78 -2.91 -0.02 3.87 16 17 C 0.05 2.66 5.40 85.29 0.46 3.12 16 18 N -0.84 -47.03 13.93 21.85 0.30 -46.73 16 19 Si 0.96 43.74 24.52 68.60 1.68 45.42 16 20 H -0.26 -11.01 6.71 99.48 0.67 -10.35 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.25 -11.83 6.87 99.48 0.68 -11.15 16 23 C -0.08 -3.15 9.48 22.67 0.21 -2.93 16 24 H 0.09 1.22 7.74 -2.39 -0.02 1.20 16 25 H 0.10 1.15 7.74 -2.39 -0.02 1.13 16 26 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.17 3.24 5.85 -2.91 -0.02 3.22 16 28 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 30 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.10 4.68 4.76 -2.91 -0.01 4.66 16 33 H 0.29 14.72 8.30 -92.70 -0.77 13.95 16 34 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -65.31 301.68 5.63 -59.68 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.07 Total: 18.43 kcal Atomic # 6 Polarization: -68.69 SS G_CDS: 3.14 Total: -65.54 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.30 Total: -46.73 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.71 Total: -6.58 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.68 Total: 45.42 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.27 Total: -4.68 kcal Total: -65.31 5.63 -59.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245748639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.941 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds