Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76197 * 103.00282 * 2 1 4 4 C 1.39040 * 119.99218 * 0.02562 * 3 2 1 5 5 C 1.38146 * 120.18994 * 180.02562 * 4 3 2 6 6 C 1.38301 * 120.17939 * 0.02562 * 5 4 3 7 7 F 1.35101 * 120.00880 * 180.02562 * 6 5 4 8 8 C 1.39535 * 119.98652 * 359.97438 * 6 5 4 9 9 C 1.48395 * 120.09733 * 179.97438 * 8 6 5 10 10 C 1.39729 * 120.00302 * 130.22322 * 9 8 6 11 11 C 1.38389 * 120.37644 * 180.28113 * 10 9 8 12 12 C 1.37727 * 120.38298 * 359.77472 * 11 10 9 13 13 C 1.40751 * 119.98446 * 359.97089 * 12 11 10 14 14 C 1.41429 * 120.18318 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99822 * 150.17895 * 14 13 12 16 16 C 1.39929 * 120.00118 * 330.18131 * 14 13 12 17 17 N 1.30823 * 119.99975 * 161.72956 * 16 14 13 18 18 Si 1.86799 * 119.99958 * 341.73094 * 16 14 13 19 19 H 1.48500 * 109.47225 * 95.41469 * 18 16 14 20 20 H 1.48496 * 109.47289 * 215.41419 * 18 16 14 21 21 H 1.48505 * 109.47057 * 335.41451 * 18 16 14 22 22 C 1.38742 * 119.99709 * 309.99811 * 9 8 6 23 23 C 1.38708 * 119.99741 * 180.25631 * 3 2 1 24 24 H 1.08993 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46877 * 299.99973 * 1 2 3 26 26 H 1.08997 * 109.47125 * 59.99716 * 1 2 3 27 27 H 1.08000 * 119.90772 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.91644 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.81286 * 0.02562 * 10 9 8 30 30 H 1.08001 * 119.81324 * 179.74704 * 11 10 9 31 31 H 1.07992 * 120.00479 * 179.97438 * 12 11 10 32 32 H 0.97006 * 119.99832 * 179.97438 * 17 16 14 33 33 H 1.08001 * 120.18466 * 359.97370 * 22 9 8 34 34 H 1.07992 * 120.08854 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1935 2.6650 0.0005 5 6 1.4997 4.0121 0.0000 6 6 2.8196 4.4250 -0.0016 7 9 3.1151 5.7433 -0.0016 8 6 3.8460 3.4799 -0.0021 9 6 5.2631 3.9202 -0.0044 10 6 6.1635 3.3822 0.9187 11 6 7.4854 3.7916 0.9273 12 6 7.9297 4.7306 0.0230 13 6 7.0374 5.2789 -0.9174 14 6 7.4893 6.2430 -1.8482 15 1 7.0229 6.3158 -2.8197 16 6 8.5405 7.1026 -1.5107 17 7 9.1955 7.7353 -2.4500 18 14 9.0088 7.3468 0.2811 19 1 10.1260 6.4327 0.6297 20 1 9.4351 8.7532 0.4941 21 1 7.8375 7.0485 1.1439 22 6 5.6951 4.8628 -0.9263 23 6 3.5369 2.1222 -0.0054 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.1612 2.3474 0.0014 28 1 0.7062 4.7448 0.0000 29 1 5.8250 2.6457 1.6324 30 1 8.1726 3.3727 1.6475 31 1 8.9625 5.0460 0.0353 32 1 9.9240 8.3315 -2.2160 33 1 5.0027 5.2776 -1.6439 34 1 4.3278 1.3869 -0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245748861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -9.095675 kcal Electronic energy + Delta-G solvation = -19292.949490 eV Core-core repulsion = 16195.595972 eV Total energy + Delta-G solvation = -3097.353518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.49698 -39.02713 -37.49958 -33.80557 -32.23849 -30.65408 -30.29859 -29.57887 -28.11775 -25.19669 -23.24855 -22.72504 -20.83977 -20.43561 -18.00998 -17.22090 -16.72884 -16.20560 -15.86363 -15.25332 -14.93429 -14.67996 -14.40256 -14.01783 -13.81193 -13.68111 -13.11725 -13.03433 -12.81311 -12.61080 -12.42017 -12.12594 -11.97122 -11.57755 -11.34763 -10.79470 -10.68875 -10.39298 -10.35470 -9.92716 -9.66531 -9.45737 -9.23566 -8.94148 -7.73426 -7.57026 -7.34659 -6.95768 -4.50594 1.04709 1.21637 1.37253 2.25343 2.53478 2.58594 3.10380 3.21443 3.32197 3.61374 3.98150 4.40234 4.47513 4.78073 4.79096 4.79739 4.88639 5.11763 5.32976 5.38139 5.41811 5.78011 5.87270 5.98735 6.13061 6.16672 6.20596 6.36108 6.46813 6.67707 6.85057 6.93260 7.09380 7.34316 7.52999 7.65489 7.82047 8.02531 8.33007 8.60399 8.77658 10.06760 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.004054 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.009095 B = 6905.636264 C = 7306.452259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.117 6.117 3 C -0.099 4.099 4 C -0.118 4.118 5 C -0.137 4.137 6 C 0.103 3.897 7 F -0.127 7.127 8 C -0.031 4.031 9 C -0.037 4.037 10 C -0.221 4.221 11 C -0.080 4.080 12 C -0.230 4.230 13 C 0.091 3.909 14 C -0.447 4.447 15 H 0.091 0.909 16 C 0.085 3.915 17 N -0.808 5.808 18 Si 0.910 3.090 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.244 1.244 22 C -0.174 4.174 23 C -0.063 4.063 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.285 0.715 33 H 0.102 0.898 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 -10.350 5.596 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.124 5.876 3 C -0.211 4.211 4 C -0.142 4.142 5 C -0.158 4.158 6 C 0.082 3.918 7 F -0.105 7.105 8 C -0.033 4.033 9 C -0.038 4.038 10 C -0.240 4.240 11 C -0.098 4.098 12 C -0.250 4.250 13 C 0.088 3.912 14 C -0.476 4.476 15 H 0.109 0.891 16 C -0.134 4.134 17 N -0.432 5.432 18 Si 0.736 3.264 19 H -0.196 1.196 20 H -0.218 1.218 21 H -0.167 1.167 22 C -0.193 4.193 23 C -0.086 4.086 24 H 0.125 0.875 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.514 -11.165 5.445 18.356 hybrid contribution -0.456 1.621 0.641 1.802 sum -13.971 -9.544 6.087 17.981 Atomic orbital electron populations 1.23662 0.95167 1.06935 1.05624 1.85501 1.05924 1.03124 1.93062 1.21567 0.96434 0.96442 1.06668 1.20874 0.98205 0.91989 1.03126 1.20902 0.94800 0.96463 1.03614 1.17787 0.92831 0.78238 1.02958 1.91545 1.94119 1.31347 1.93494 1.19089 0.93526 0.91932 0.98802 1.18216 0.89214 0.98294 0.98044 1.20337 0.93662 1.06605 1.03416 1.20523 0.94830 0.96966 0.97471 1.21123 0.98679 1.02838 1.02323 1.17635 0.90558 0.91856 0.91114 1.19472 1.13139 1.13513 1.01432 0.89110 1.26129 0.93214 0.94008 1.00033 1.69696 1.16032 1.22066 1.35417 0.86336 0.80568 0.76489 0.83013 1.19608 1.21769 1.16675 1.21076 0.95487 1.01337 1.01388 1.20730 0.94239 0.94639 0.99034 0.87526 0.89795 0.89748 0.85377 0.84616 0.88527 0.88458 0.88065 0.90436 0.87945 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.15 101.05 0.92 -0.09 16 2 S -0.12 -1.30 22.56 -107.50 -2.43 -3.73 16 3 C -0.10 -1.33 6.10 -39.11 -0.24 -1.57 16 4 C -0.12 -1.43 9.36 -39.32 -0.37 -1.80 16 5 C -0.14 -1.86 10.01 -39.59 -0.40 -2.25 16 6 C 0.10 1.78 7.15 -39.07 -0.28 1.50 16 7 F -0.13 -2.43 15.87 2.25 0.04 -2.40 16 8 C -0.03 -0.56 5.47 -104.86 -0.57 -1.14 16 9 C -0.04 -0.80 5.31 -104.97 -0.56 -1.36 16 10 C -0.22 -4.60 9.51 -38.97 -0.37 -4.97 16 11 C -0.08 -1.72 10.01 -39.71 -0.40 -2.12 16 12 C -0.23 -5.58 7.17 -38.82 -0.28 -5.86 16 13 C 0.09 2.35 5.10 -106.87 -0.55 1.80 16 14 C -0.45 -12.24 9.57 -37.74 -0.36 -12.61 16 15 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 16 C 0.08 2.25 5.40 -17.35 -0.09 2.16 16 17 N -0.81 -21.70 13.93 55.55 0.77 -20.93 16 18 Si 0.91 21.02 24.52 -169.99 -4.17 16.85 16 19 H -0.27 -6.01 6.71 56.52 0.38 -5.63 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.24 -5.82 6.86 56.52 0.39 -5.43 16 22 C -0.17 -4.15 8.59 -38.53 -0.33 -4.48 16 23 C -0.06 -1.00 9.24 -39.04 -0.36 -1.36 16 24 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.52 7.74 -51.92 -0.40 0.12 16 26 H 0.08 0.54 7.74 -51.93 -0.40 0.14 16 27 H 0.13 1.15 5.86 -52.49 -0.31 0.84 16 28 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.10 1.77 8.03 -52.49 -0.42 1.35 16 30 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.10 2.43 4.72 -52.49 -0.25 2.19 16 32 H 0.29 6.93 8.30 -40.82 -0.34 6.59 16 33 H 0.10 2.41 7.77 -52.49 -0.41 2.00 16 34 H 0.14 2.11 8.04 -52.49 -0.42 1.69 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -28.30 305.21 -8.88 -37.19 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -3.47 Total: 2.56 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: -4.23 Total: -34.15 kcal Atomic # 7 Polarization: -21.70 SS G_CDS: 0.77 Total: -20.93 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.17 Total: 16.85 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.43 Total: -3.73 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.30 -8.88 -37.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245748861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.092 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds