Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76197 * 103.00282 * 2 1 4 4 C 1.39040 * 119.99218 * 0.02562 * 3 2 1 5 5 C 1.38146 * 120.18994 * 180.02562 * 4 3 2 6 6 C 1.38301 * 120.17939 * 0.02562 * 5 4 3 7 7 F 1.35101 * 120.00880 * 180.02562 * 6 5 4 8 8 C 1.39535 * 119.98652 * 359.97438 * 6 5 4 9 9 C 1.48395 * 120.09733 * 179.97438 * 8 6 5 10 10 C 1.39729 * 120.00302 * 130.22322 * 9 8 6 11 11 C 1.38389 * 120.37644 * 180.28113 * 10 9 8 12 12 C 1.37727 * 120.38298 * 359.77472 * 11 10 9 13 13 C 1.40751 * 119.98446 * 359.97089 * 12 11 10 14 14 C 1.41429 * 120.18318 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99822 * 150.17895 * 14 13 12 16 16 C 1.39929 * 120.00118 * 330.18131 * 14 13 12 17 17 N 1.30823 * 119.99975 * 161.72956 * 16 14 13 18 18 Si 1.86799 * 119.99958 * 341.73094 * 16 14 13 19 19 H 1.48500 * 109.47225 * 95.41469 * 18 16 14 20 20 H 1.48496 * 109.47289 * 215.41419 * 18 16 14 21 21 H 1.48505 * 109.47057 * 335.41451 * 18 16 14 22 22 C 1.38742 * 119.99709 * 309.99811 * 9 8 6 23 23 C 1.38708 * 119.99741 * 180.25631 * 3 2 1 24 24 H 1.08993 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46877 * 299.99973 * 1 2 3 26 26 H 1.08997 * 109.47125 * 59.99716 * 1 2 3 27 27 H 1.08000 * 119.90772 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.91644 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.81286 * 0.02562 * 10 9 8 30 30 H 1.08001 * 119.81324 * 179.74704 * 11 10 9 31 31 H 1.07992 * 120.00479 * 179.97438 * 12 11 10 32 32 H 0.97006 * 119.99832 * 179.97438 * 17 16 14 33 33 H 1.08001 * 120.18466 * 359.97370 * 22 9 8 34 34 H 1.07992 * 120.08854 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1935 2.6650 0.0005 5 6 1.4997 4.0121 0.0000 6 6 2.8196 4.4250 -0.0016 7 9 3.1151 5.7433 -0.0016 8 6 3.8460 3.4799 -0.0021 9 6 5.2631 3.9202 -0.0044 10 6 6.1635 3.3822 0.9187 11 6 7.4854 3.7916 0.9273 12 6 7.9297 4.7306 0.0230 13 6 7.0374 5.2789 -0.9174 14 6 7.4893 6.2430 -1.8482 15 1 7.0229 6.3158 -2.8197 16 6 8.5405 7.1026 -1.5107 17 7 9.1955 7.7353 -2.4500 18 14 9.0088 7.3468 0.2811 19 1 10.1260 6.4327 0.6297 20 1 9.4351 8.7532 0.4941 21 1 7.8375 7.0485 1.1439 22 6 5.6951 4.8628 -0.9263 23 6 3.5369 2.1222 -0.0054 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.1612 2.3474 0.0014 28 1 0.7062 4.7448 0.0000 29 1 5.8250 2.6457 1.6324 30 1 8.1726 3.3727 1.6475 31 1 8.9625 5.0460 0.0353 32 1 9.9240 8.3315 -2.2160 33 1 5.0027 5.2776 -1.6439 34 1 4.3278 1.3869 -0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245748861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -23.069816 kcal Electronic energy + Delta-G solvation = -19293.555454 eV Core-core repulsion = 16195.595972 eV Total energy + Delta-G solvation = -3097.959482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.068 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.86843 -40.37957 -39.11161 -35.67812 -33.73889 -32.20472 -31.72288 -30.55779 -29.25389 -27.10965 -24.61924 -23.95951 -22.45444 -22.17856 -19.57215 -18.51968 -18.10529 -17.65438 -17.41830 -16.63514 -16.52999 -15.92982 -15.67606 -15.54585 -15.00063 -14.70340 -14.58489 -14.35792 -14.22415 -13.96158 -13.66814 -13.50278 -13.32515 -13.19794 -12.82159 -12.66444 -12.31359 -12.02750 -11.73331 -11.53474 -11.21302 -11.07694 -10.57278 -10.30218 -9.59654 -9.20168 -8.93249 -8.33908 -6.55463 -0.18962 0.05415 0.51891 0.74809 0.84654 1.23140 1.38075 1.46451 1.49292 2.09929 2.38418 2.58756 3.25981 3.43444 3.56126 3.75549 4.02204 4.23904 4.28858 4.33802 4.35856 4.45473 4.56615 4.62009 4.78166 4.86971 4.92084 4.98041 5.02200 5.06324 5.16635 5.26208 5.52095 5.68551 5.75032 5.82164 5.90533 6.17564 6.32731 6.67863 6.76933 8.15828 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.004054 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.009095 B = 6905.636264 C = 7306.452259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.136 6.136 3 C -0.096 4.096 4 C -0.102 4.102 5 C -0.126 4.126 6 C 0.073 3.927 7 F -0.149 7.149 8 C -0.062 4.062 9 C -0.032 4.032 10 C -0.207 4.207 11 C -0.080 4.080 12 C -0.244 4.244 13 C 0.073 3.927 14 C -0.489 4.489 15 H 0.052 0.948 16 C 0.049 3.951 17 N -0.849 5.849 18 Si 0.965 3.035 19 H -0.251 1.251 20 H -0.275 1.275 21 H -0.258 1.258 22 C -0.196 4.196 23 C -0.070 4.070 24 H 0.127 0.873 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.171 0.829 28 H 0.165 0.835 29 H 0.130 0.870 30 H 0.137 0.863 31 H 0.102 0.898 32 H 0.295 0.705 33 H 0.088 0.912 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.905 -12.988 8.157 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.106 5.894 3 C -0.209 4.209 4 C -0.125 4.125 5 C -0.146 4.146 6 C 0.051 3.949 7 F -0.127 7.127 8 C -0.065 4.065 9 C -0.032 4.032 10 C -0.226 4.226 11 C -0.098 4.098 12 C -0.263 4.263 13 C 0.071 3.929 14 C -0.518 4.518 15 H 0.071 0.929 16 C -0.165 4.165 17 N -0.475 5.475 18 Si 0.788 3.212 19 H -0.176 1.176 20 H -0.202 1.202 21 H -0.182 1.182 22 C -0.215 4.215 23 C -0.093 4.093 24 H 0.146 0.854 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.188 0.812 28 H 0.183 0.817 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.080 -13.826 8.001 22.665 hybrid contribution 0.014 2.125 -0.114 2.128 sum -16.066 -11.701 7.887 21.383 Atomic orbital electron populations 1.23853 0.91060 1.08835 1.06966 1.85676 1.10402 1.00841 1.92468 1.21814 0.95763 0.98465 1.04840 1.21373 0.99900 0.90922 1.00331 1.21241 0.93691 0.97927 1.01733 1.18170 0.94385 0.77252 1.05068 1.91487 1.94448 1.32854 1.93953 1.18984 0.91921 0.93431 1.02128 1.18552 0.91557 0.96616 0.96519 1.20845 0.93253 1.05794 1.02679 1.20965 0.95904 0.95720 0.97206 1.21252 0.98526 1.03801 1.02736 1.17774 0.91634 0.91882 0.91609 1.19440 1.15090 1.16307 1.00978 0.92941 1.26794 0.92824 0.93312 1.03598 1.69719 1.17252 1.23541 1.37036 0.85507 0.80117 0.77504 0.78122 1.17612 1.20152 1.18160 1.21098 0.94885 1.03077 1.02471 1.20726 0.95732 0.93364 0.99508 0.85426 0.88267 0.88493 0.81212 0.81701 0.85171 0.84558 0.88049 0.89492 0.89346 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.15 113.37 1.04 -0.17 16 2 S -0.14 -2.52 22.56 -56.49 -1.27 -3.79 16 3 C -0.10 -2.29 6.10 22.57 0.14 -2.15 16 4 C -0.10 -2.04 9.36 22.44 0.21 -1.83 16 5 C -0.13 -3.04 10.01 22.26 0.22 -2.82 16 6 C 0.07 2.48 7.15 22.60 0.16 2.64 16 7 F -0.15 -5.90 15.87 44.97 0.71 -5.18 16 8 C -0.06 -2.24 5.47 -20.02 -0.11 -2.35 16 9 C -0.03 -1.39 5.31 -20.09 -0.11 -1.50 16 10 C -0.21 -8.24 9.51 22.67 0.22 -8.03 16 11 C -0.08 -3.31 10.01 22.18 0.22 -3.09 16 12 C -0.24 -11.87 7.17 22.76 0.16 -11.71 16 13 C 0.07 3.96 5.10 -21.32 -0.11 3.85 16 14 C -0.49 -28.87 9.57 23.47 0.22 -28.65 16 15 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 16 C 0.05 2.74 5.40 85.25 0.46 3.20 16 17 N -0.85 -48.03 13.93 21.82 0.30 -47.72 16 18 Si 0.96 44.21 24.52 68.60 1.68 45.89 16 19 H -0.25 -10.64 6.71 99.48 0.67 -9.98 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.26 -12.26 6.86 99.48 0.68 -11.57 16 22 C -0.20 -9.87 8.59 22.95 0.20 -9.68 16 23 C -0.07 -2.10 9.24 22.62 0.21 -1.89 16 24 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.10 0.64 7.74 -2.39 -0.02 0.62 16 26 H 0.10 0.68 7.74 -2.39 -0.02 0.66 16 27 H 0.17 1.98 5.86 -2.91 -0.02 1.96 16 28 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.13 4.32 8.03 -2.91 -0.02 4.30 16 30 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.10 4.86 4.72 -2.91 -0.01 4.85 16 32 H 0.29 14.88 8.30 -92.70 -0.77 14.11 16 33 H 0.09 4.55 7.77 -2.91 -0.02 4.53 16 34 H 0.14 4.02 8.04 -2.91 -0.02 3.99 16 Total: -1.00 -66.74 305.21 5.62 -61.12 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.06 Total: 13.86 kcal Atomic # 6 Polarization: -67.30 SS G_CDS: 3.14 Total: -64.17 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.30 Total: -47.72 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.71 Total: -5.18 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.68 Total: 45.89 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -1.27 Total: -3.79 kcal Total: -66.74 5.62 -61.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245748861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.051 kcal (2) G-P(sol) polarization free energy of solvation -66.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds