Wall clock time and date at job start Tue Mar 31 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38872 * 119.24473 * 2 1 4 4 C 1.36891 * 119.80009 * 179.97438 * 3 2 1 5 5 C 1.41121 * 118.39689 * 359.97438 * 4 3 2 6 6 C 1.40874 * 120.72002 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00276 * 153.61170 * 6 5 4 8 8 C 1.40071 * 120.00038 * 333.60755 * 6 5 4 9 9 N 1.30779 * 119.99990 * 343.62198 * 8 6 5 10 10 Si 1.86799 * 120.00284 * 163.62027 * 8 6 5 11 11 H 1.48496 * 109.46949 * 60.00048 * 10 8 6 12 12 H 1.48496 * 109.47427 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47155 * 300.00409 * 10 8 6 14 14 C 1.41878 * 118.55803 * 0.02562 * 5 4 3 15 15 C 1.47799 * 119.99199 * 180.02562 * 14 5 4 16 16 C 1.40142 * 120.54916 * 308.42841 * 15 14 5 17 17 C 1.38235 * 118.30343 * 179.75624 * 16 15 14 18 18 C 1.38585 * 119.30266 * 0.51517 * 17 16 15 19 19 Cl 1.73600 * 119.46782 * 179.74343 * 18 17 16 20 20 N 1.32039 * 121.06455 * 359.72480 * 18 17 16 21 21 C 1.31688 * 121.86385 * 0.02562 * 20 18 17 22 22 C 1.50701 * 119.71833 * 180.02562 * 21 20 18 23 23 N 1.31746 * 119.25109 * 179.72355 * 2 1 3 24 24 H 1.09001 * 109.47209 * 90.00375 * 1 2 3 25 25 H 1.09002 * 109.47819 * 330.00303 * 1 2 3 26 26 H 1.08998 * 109.47252 * 210.00377 * 1 2 3 27 27 H 1.07994 * 120.10047 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.80054 * 180.02562 * 4 3 2 29 29 H 0.96998 * 120.00024 * 179.97438 * 9 8 6 30 30 H 1.08001 * 120.85408 * 0.02562 * 16 15 14 31 31 H 1.08000 * 120.35368 * 180.23742 * 17 16 15 32 32 H 1.08999 * 109.46778 * 267.69139 * 22 21 20 33 33 H 1.08996 * 109.46852 * 27.69066 * 22 21 20 34 34 H 1.08998 * 109.47114 * 147.69462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2117 0.0000 4 6 3.5542 1.2250 0.0005 5 6 4.2373 -0.0099 0.0016 6 6 5.6454 -0.0533 0.0027 7 1 6.1590 -0.9072 0.4192 8 6 6.3794 1.0109 -0.5364 9 7 5.7925 1.8811 -1.3165 10 14 8.1965 1.1874 -0.1410 11 1 8.9236 -0.0213 -0.6051 12 1 8.7387 2.3864 -0.8291 13 1 8.3716 1.3375 1.3259 14 6 3.4752 -1.2066 0.0016 15 6 4.1581 -2.5174 0.0033 16 6 5.1536 -2.8031 -0.9409 17 6 5.7655 -4.0418 -0.8936 18 6 5.3713 -4.9568 0.0697 19 17 6.1321 -6.5160 0.1286 20 7 4.4265 -4.6616 0.9436 21 6 3.8182 -3.4936 0.9418 22 6 2.7467 -3.2078 1.9622 23 7 2.1507 -1.1494 0.0055 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3635 0.8900 0.5138 26 1 -0.3633 -0.8899 0.5139 27 1 1.6347 2.1407 -0.0004 28 1 4.0982 2.1580 0.0010 29 1 6.3007 2.6183 -1.6896 30 1 5.4386 -2.0727 -1.6836 31 1 6.5395 -4.2956 -1.6028 32 1 1.7728 -3.4722 1.5502 33 1 2.9335 -3.7971 2.8599 34 1 2.7587 -2.1475 2.2145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245769301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:01 Heat of formation + Delta-G solvation = 36.034604 kcal Electronic energy + Delta-G solvation = -19998.534193 eV Core-core repulsion = 16921.013926 eV Total energy + Delta-G solvation = -3077.520267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88960 -38.40818 -36.28228 -34.53310 -32.86720 -32.51977 -31.06487 -29.92420 -28.05431 -27.04422 -24.70539 -23.16155 -21.87529 -20.90073 -20.46044 -17.55870 -16.61611 -16.01444 -15.66731 -15.55003 -14.58558 -14.11365 -14.10658 -13.43277 -13.30828 -12.88362 -12.58020 -12.44572 -12.23486 -11.94837 -11.90463 -11.63755 -11.60730 -11.27014 -11.20307 -11.07912 -10.97796 -10.96645 -10.69387 -10.07624 -9.55167 -9.28283 -9.17054 -8.59465 -8.20591 -8.13926 -7.52030 -7.07280 -4.68309 1.35280 1.74862 2.20110 2.45053 2.78768 2.89588 2.92344 3.03494 3.68255 4.16418 4.35554 4.87263 5.17369 5.29648 5.41091 5.50909 5.73692 5.90564 5.96984 6.01814 6.17965 6.22869 6.28523 6.32792 6.42312 6.45933 6.61260 6.67205 6.80890 6.84907 6.92336 7.00663 7.11096 7.50940 7.64490 7.74686 8.17994 8.28014 8.41649 8.49021 9.41338 9.80461 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.007286 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.821883 B = 3842.104514 C = 5824.027929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 C -0.139 4.139 4 C -0.126 4.126 5 C 0.088 3.912 6 C -0.440 4.440 7 H 0.086 0.914 8 C 0.077 3.923 9 N -0.779 5.779 10 Si 0.909 3.091 11 H -0.260 1.260 12 H -0.275 1.275 13 H -0.260 1.260 14 C 0.009 3.991 15 C -0.011 4.011 16 C -0.042 4.042 17 C -0.164 4.164 18 C 0.157 3.843 19 Cl -0.058 7.058 20 N -0.485 5.485 21 C 0.146 3.854 22 C -0.084 4.084 23 N -0.440 5.440 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.288 0.712 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 -3.644 0.811 3.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.159 4.159 4 C -0.152 4.152 5 C 0.083 3.917 6 C -0.468 4.468 7 H 0.104 0.896 8 C -0.144 4.144 9 N -0.403 5.403 10 Si 0.732 3.268 11 H -0.184 1.184 12 H -0.200 1.200 13 H -0.185 1.185 14 C -0.129 4.129 15 C -0.014 4.014 16 C -0.069 4.069 17 C -0.186 4.186 18 C -0.008 4.008 19 Cl -0.030 7.030 20 N -0.197 5.197 21 C 0.008 3.992 22 C -0.141 4.141 23 N -0.149 5.149 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.099 0.901 30 H 0.167 0.833 31 H 0.154 0.846 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.620 -4.946 1.286 5.148 hybrid contribution 1.764 1.518 -0.644 2.415 sum 1.144 -3.428 0.642 3.671 Atomic orbital electron populations 1.20287 0.91384 1.00947 1.00587 1.20250 0.94875 0.88408 1.11377 1.21274 0.95368 0.97258 1.01984 1.21379 0.92671 0.98658 1.02488 1.18275 0.93960 0.90752 0.88698 1.19552 0.91020 1.03460 1.32778 0.89645 1.26010 1.01696 0.94213 0.92483 1.69744 1.39253 1.11062 1.20216 0.86314 0.81091 0.79070 0.80301 1.18437 1.19977 1.18451 1.19038 0.88453 0.90278 1.15139 1.19299 0.94848 0.93284 0.93990 1.21787 0.93254 0.94717 0.97102 1.21608 1.02898 0.93929 1.00120 1.21394 0.95890 0.88107 0.95392 1.98346 1.79231 1.27412 1.98022 1.66600 1.08051 1.20965 1.24074 1.21283 0.95368 0.87147 0.95387 1.20542 0.95634 1.02384 0.95573 1.66853 1.09266 1.29289 1.09459 0.93139 0.92853 0.92484 0.88193 0.85602 0.90090 0.83341 0.84572 0.90299 0.91906 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.15 36.00 0.37 -0.87 16 2 C -0.01 -0.14 6.79 -82.40 -0.56 -0.70 16 3 C -0.14 -2.95 9.64 -39.83 -0.38 -3.33 16 4 C -0.13 -2.95 8.73 -38.98 -0.34 -3.29 16 5 C 0.09 2.11 5.56 -106.41 -0.59 1.52 16 6 C -0.44 -10.29 7.27 -37.90 -0.28 -10.56 16 7 H 0.09 1.98 6.70 -52.49 -0.35 1.63 16 8 C 0.08 1.70 5.18 -17.31 -0.09 1.62 16 9 N -0.78 -17.82 11.04 55.55 0.61 -17.21 16 10 Si 0.91 16.93 29.59 -169.99 -5.03 11.90 16 11 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 12 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 13 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 14 C 0.01 0.20 5.38 -82.24 -0.44 -0.24 16 15 C -0.01 -0.24 5.01 -104.75 -0.53 -0.76 16 16 C -0.04 -0.82 8.19 -38.87 -0.32 -1.14 16 17 C -0.16 -2.84 9.86 -39.45 -0.39 -3.23 16 18 C 0.16 2.83 7.27 -17.33 -0.13 2.71 16 19 Cl -0.06 -0.89 29.10 -51.86 -1.51 -2.40 16 20 N -0.49 -9.54 10.24 -6.25 -0.06 -9.60 16 21 C 0.15 2.95 6.82 -82.14 -0.56 2.39 16 22 C -0.08 -1.51 9.07 36.01 0.33 -1.19 16 23 N -0.44 -9.88 8.87 -5.45 -0.05 -9.92 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.13 2.99 6.36 -52.49 -0.33 2.65 16 29 H 0.29 6.00 8.29 -40.82 -0.34 5.67 16 30 H 0.15 2.90 7.50 -52.49 -0.39 2.51 16 31 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.48 6.88 -51.93 -0.36 1.12 16 LS Contribution 307.57 15.07 4.63 4.63 Total: -1.00 -25.06 307.57 -8.84 -33.90 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -3.53 Total: 5.79 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -3.91 Total: -17.09 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.50 Total: -36.74 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.51 Total: -2.40 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.06 -8.84 -33.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245769301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.938 kcal (2) G-P(sol) polarization free energy of solvation -25.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds