Wall clock time and date at job start Tue Mar 31 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38872 * 119.24473 * 2 1 4 4 C 1.36891 * 119.80009 * 179.97438 * 3 2 1 5 5 C 1.41121 * 118.39689 * 359.97438 * 4 3 2 6 6 C 1.40874 * 120.72002 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00276 * 153.61170 * 6 5 4 8 8 C 1.40071 * 120.00038 * 333.60755 * 6 5 4 9 9 N 1.30779 * 119.99990 * 343.62198 * 8 6 5 10 10 Si 1.86799 * 120.00284 * 163.62027 * 8 6 5 11 11 H 1.48496 * 109.46949 * 60.00048 * 10 8 6 12 12 H 1.48496 * 109.47427 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47155 * 300.00409 * 10 8 6 14 14 C 1.41878 * 118.55803 * 0.02562 * 5 4 3 15 15 C 1.47799 * 119.99199 * 180.02562 * 14 5 4 16 16 C 1.40142 * 120.54916 * 308.42841 * 15 14 5 17 17 C 1.38235 * 118.30343 * 179.75624 * 16 15 14 18 18 C 1.38585 * 119.30266 * 0.51517 * 17 16 15 19 19 Cl 1.73600 * 119.46782 * 179.74343 * 18 17 16 20 20 N 1.32039 * 121.06455 * 359.72480 * 18 17 16 21 21 C 1.31688 * 121.86385 * 0.02562 * 20 18 17 22 22 C 1.50701 * 119.71833 * 180.02562 * 21 20 18 23 23 N 1.31746 * 119.25109 * 179.72355 * 2 1 3 24 24 H 1.09001 * 109.47209 * 90.00375 * 1 2 3 25 25 H 1.09002 * 109.47819 * 330.00303 * 1 2 3 26 26 H 1.08998 * 109.47252 * 210.00377 * 1 2 3 27 27 H 1.07994 * 120.10047 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.80054 * 180.02562 * 4 3 2 29 29 H 0.96998 * 120.00024 * 179.97438 * 9 8 6 30 30 H 1.08001 * 120.85408 * 0.02562 * 16 15 14 31 31 H 1.08000 * 120.35368 * 180.23742 * 17 16 15 32 32 H 1.08999 * 109.46778 * 267.69139 * 22 21 20 33 33 H 1.08996 * 109.46852 * 27.69066 * 22 21 20 34 34 H 1.08998 * 109.47114 * 147.69462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2117 0.0000 4 6 3.5542 1.2250 0.0005 5 6 4.2373 -0.0099 0.0016 6 6 5.6454 -0.0533 0.0027 7 1 6.1590 -0.9072 0.4192 8 6 6.3794 1.0109 -0.5364 9 7 5.7925 1.8811 -1.3165 10 14 8.1965 1.1874 -0.1410 11 1 8.9236 -0.0213 -0.6051 12 1 8.7387 2.3864 -0.8291 13 1 8.3716 1.3375 1.3259 14 6 3.4752 -1.2066 0.0016 15 6 4.1581 -2.5174 0.0033 16 6 5.1536 -2.8031 -0.9409 17 6 5.7655 -4.0418 -0.8936 18 6 5.3713 -4.9568 0.0697 19 17 6.1321 -6.5160 0.1286 20 7 4.4265 -4.6616 0.9436 21 6 3.8182 -3.4936 0.9418 22 6 2.7467 -3.2078 1.9622 23 7 2.1507 -1.1494 0.0055 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3635 0.8900 0.5138 26 1 -0.3633 -0.8899 0.5139 27 1 1.6347 2.1407 -0.0004 28 1 4.0982 2.1580 0.0010 29 1 6.3007 2.6183 -1.6896 30 1 5.4386 -2.0727 -1.6836 31 1 6.5395 -4.2956 -1.6028 32 1 1.7728 -3.4722 1.5502 33 1 2.9335 -3.7971 2.8599 34 1 2.7587 -2.1475 2.2145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245769301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:01 Heat of formation + Delta-G solvation = 24.666717 kcal Electronic energy + Delta-G solvation = -19999.027141 eV Core-core repulsion = 16921.013926 eV Total energy + Delta-G solvation = -3078.013215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.42022 -40.03908 -37.62654 -36.20420 -34.43608 -33.99203 -32.73436 -31.48735 -29.62040 -28.54912 -26.29216 -24.75612 -23.41746 -22.53223 -22.06161 -19.27395 -18.09479 -17.54015 -17.27172 -17.09612 -16.19375 -15.70142 -15.61262 -14.90595 -14.84098 -14.40440 -14.11361 -13.89754 -13.79068 -13.51234 -13.37341 -13.17351 -13.07655 -12.76650 -12.71774 -12.60972 -12.34936 -12.26776 -12.18275 -11.72744 -11.20055 -10.80827 -10.67963 -10.22152 -9.90264 -9.74866 -9.17051 -8.72956 -6.42515 -0.16501 0.24346 0.79774 0.81164 1.08725 1.37250 1.46162 1.50540 2.13810 2.62743 2.70788 3.42428 3.56252 3.69623 3.91356 4.04045 4.28854 4.37550 4.48444 4.58262 4.64757 4.77124 4.80405 4.90044 4.98629 5.01896 5.06666 5.14664 5.18951 5.29981 5.34096 5.39613 5.58803 5.80654 5.93741 6.04711 6.45940 6.69905 6.73991 6.80386 7.71136 8.17195 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.007286 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.821883 B = 3842.104514 C = 5824.027929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.148 4.148 5 C 0.061 3.939 6 C -0.460 4.460 7 H 0.079 0.921 8 C 0.046 3.954 9 N -0.807 5.807 10 Si 0.970 3.030 11 H -0.256 1.256 12 H -0.265 1.265 13 H -0.264 1.264 14 C 0.002 3.998 15 C -0.037 4.037 16 C -0.048 4.048 17 C -0.154 4.154 18 C 0.152 3.848 19 Cl -0.029 7.029 20 N -0.495 5.495 21 C 0.137 3.863 22 C -0.075 4.075 23 N -0.453 5.453 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.295 0.705 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 -4.497 0.801 4.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.156 4.156 3 C -0.162 4.162 4 C -0.174 4.174 5 C 0.056 3.944 6 C -0.488 4.488 7 H 0.097 0.903 8 C -0.172 4.172 9 N -0.432 5.432 10 Si 0.790 3.210 11 H -0.180 1.180 12 H -0.189 1.189 13 H -0.188 1.188 14 C -0.136 4.136 15 C -0.040 4.040 16 C -0.074 4.074 17 C -0.175 4.175 18 C -0.012 4.012 19 Cl -0.001 7.001 20 N -0.207 5.207 21 C -0.001 4.001 22 C -0.132 4.132 23 N -0.161 5.161 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.133 0.867 29 H 0.106 0.894 30 H 0.159 0.841 31 H 0.187 0.813 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.373 -5.806 1.273 5.955 hybrid contribution 1.621 1.679 -0.660 2.425 sum 1.249 -4.127 0.612 4.355 Atomic orbital electron populations 1.20348 0.88115 1.02511 1.01761 1.21028 0.97129 0.87950 1.09515 1.21580 0.94810 0.98725 1.01083 1.21421 0.93757 0.98187 1.04011 1.18583 0.94721 0.91453 0.89639 1.19592 0.91114 1.04139 1.33999 0.90316 1.26660 1.05209 0.93528 0.91834 1.69776 1.40826 1.11668 1.20902 0.85404 0.76490 0.79366 0.79699 1.17973 1.18924 1.18822 1.19331 0.88829 0.90906 1.14498 1.19396 0.96022 0.93149 0.95430 1.21799 0.93208 0.95583 0.96813 1.21872 1.02783 0.92649 1.00169 1.21751 0.95304 0.89341 0.94846 1.98356 1.78506 1.25292 1.97906 1.66684 1.08659 1.20671 1.24704 1.21476 0.95845 0.87176 0.95583 1.20466 0.95352 1.01537 0.95870 1.66971 1.09120 1.29971 1.10071 0.92016 0.90357 0.91898 0.85526 0.86708 0.89440 0.84118 0.81304 0.89881 0.90193 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.18 10.15 71.23 0.72 -1.46 16 2 C -0.01 -0.57 6.79 42.72 0.29 -0.28 16 3 C -0.14 -6.02 9.64 22.11 0.21 -5.81 16 4 C -0.15 -7.09 8.73 22.66 0.20 -6.90 16 5 C 0.06 3.00 5.56 -21.03 -0.12 2.88 16 6 C -0.46 -22.16 7.27 23.36 0.17 -21.99 16 7 H 0.08 3.77 6.70 -2.91 -0.02 3.75 16 8 C 0.05 2.06 5.18 85.29 0.44 2.51 16 9 N -0.81 -37.67 11.04 21.85 0.24 -37.43 16 10 Si 0.97 34.70 29.59 68.60 2.03 36.73 16 11 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 12 H -0.27 -8.96 7.11 99.48 0.71 -8.26 16 13 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 14 C 0.00 0.10 5.38 42.46 0.23 0.32 16 15 C -0.04 -1.59 5.01 -19.95 -0.10 -1.69 16 16 C -0.05 -1.86 8.19 22.73 0.19 -1.67 16 17 C -0.15 -5.09 9.86 22.35 0.22 -4.87 16 18 C 0.15 5.24 7.27 84.74 0.62 5.86 16 19 Cl -0.03 -0.81 29.10 -2.72 -0.08 -0.89 16 20 N -0.50 -18.92 10.24 -173.67 -1.78 -20.70 16 21 C 0.14 5.50 6.82 42.92 0.29 5.79 16 22 C -0.07 -2.68 9.07 71.24 0.65 -2.04 16 23 N -0.45 -20.41 8.87 -171.15 -1.52 -21.93 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 2.04 8.07 -2.39 -0.02 2.02 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 28 H 0.12 5.65 6.36 -2.91 -0.02 5.63 16 29 H 0.29 12.43 8.29 -92.71 -0.77 11.66 16 30 H 0.14 5.64 7.50 -2.91 -0.02 5.62 16 31 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 2.36 6.88 -2.39 -0.02 2.35 16 Total: -1.00 -53.95 307.57 4.04 -49.92 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 1.13 Total: 23.65 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.01 Total: -29.34 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -3.05 Total: -80.06 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -53.95 4.04 -49.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245769301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.582 kcal (2) G-P(sol) polarization free energy of solvation -53.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds