Wall clock time and date at job start Tue Mar 31 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35802 * 116.99625 * 2 1 4 4 C 1.38549 * 120.12996 * 0.22826 * 3 2 1 5 5 C 1.38194 * 120.10137 * 180.27224 * 4 3 2 6 6 C 1.38618 * 120.36525 * 359.77905 * 5 4 3 7 7 Cl 1.73590 * 119.87433 * 179.97438 * 6 5 4 8 8 C 1.37960 * 120.25148 * 359.96974 * 6 5 4 9 9 C 1.39658 * 119.89240 * 0.02562 * 8 6 5 10 10 C 1.47739 * 120.17646 * 180.02562 * 9 8 6 11 11 C 1.39251 * 120.34429 * 65.02211 * 10 9 8 12 12 C 1.38027 * 119.97542 * 179.97438 * 11 10 9 13 13 C 1.38959 * 120.68770 * 359.73443 * 12 11 10 14 14 C 1.36414 * 120.69929 * 0.54790 * 13 12 11 15 15 C 1.40756 * 119.99088 * 359.45348 * 14 13 12 16 16 C 1.40847 * 120.33576 * 180.25137 * 15 14 13 17 17 H 1.07999 * 119.99952 * 150.02710 * 16 15 14 18 18 C 1.40048 * 119.99670 * 330.03008 * 16 15 14 19 19 N 1.30794 * 119.99888 * 161.74363 * 18 16 15 20 20 Si 1.86797 * 120.00118 * 341.73813 * 18 16 15 21 21 H 1.48501 * 109.47335 * 95.40427 * 20 18 16 22 22 H 1.48508 * 109.47369 * 215.39991 * 20 18 16 23 23 H 1.48494 * 109.47349 * 335.40097 * 20 18 16 24 24 H 1.09002 * 109.47005 * 300.00074 * 1 2 3 25 25 H 1.08992 * 109.47452 * 60.00126 * 1 2 3 26 26 H 1.09000 * 109.46761 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.94941 * 0.03097 * 4 3 2 28 28 H 1.08002 * 119.81593 * 179.74410 * 5 4 3 29 29 H 1.08001 * 120.04978 * 180.02562 * 8 6 5 30 30 H 1.08001 * 120.00616 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.65427 * 179.97438 * 12 11 10 32 32 H 1.07997 * 119.65393 * 180.30482 * 13 12 11 33 33 H 1.08000 * 120.00119 * 179.72112 * 14 13 12 34 34 H 0.96998 * 119.99913 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2934 2.3737 0.0048 5 6 1.9213 3.6047 -0.0009 6 6 3.3051 3.6855 -0.0068 7 17 4.0806 5.2386 -0.0146 8 6 4.0685 2.5363 -0.0064 9 6 3.4450 1.2866 -0.0006 10 6 4.2563 0.0519 0.0004 11 6 5.0703 -0.2540 1.0880 12 6 5.8247 -1.4099 1.0812 13 6 5.7784 -2.2806 -0.0008 14 6 4.9951 -2.0054 -1.0832 15 6 4.2138 -0.8348 -1.1068 16 6 3.3983 -0.5462 -2.2184 17 1 2.4856 0.0161 -2.0870 18 6 3.7710 -0.9884 -3.4939 19 7 2.8820 -1.0464 -4.4515 20 14 5.5376 -1.4953 -3.8274 21 1 5.6673 -2.9670 -3.6765 22 1 5.9120 -1.1048 -5.2105 23 1 6.4381 -0.8173 -2.8608 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2148 2.3186 0.0090 28 1 1.3306 4.5089 -0.0013 29 1 5.1464 2.6030 -0.0106 30 1 5.1113 0.4129 1.9365 31 1 6.4546 -1.6419 1.9273 32 1 6.3719 -3.1827 0.0135 33 1 4.9711 -2.6878 -1.9199 34 1 3.1403 -1.3524 -5.3350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245813029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:22 Heat of formation + Delta-G solvation = -3.494667 kcal Electronic energy + Delta-G solvation = -20257.179809 eV Core-core repulsion = 17145.652674 eV Total energy + Delta-G solvation = -3111.527136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78162 -37.67487 -37.08782 -35.72054 -33.62920 -31.96602 -30.42403 -29.54447 -28.37782 -26.77030 -25.13982 -22.72443 -21.69651 -21.08795 -19.89118 -17.65458 -17.35381 -16.31782 -15.79509 -15.41277 -15.20928 -14.47804 -14.07477 -13.84163 -13.65045 -13.41801 -12.90556 -12.75911 -12.50951 -12.07067 -12.01371 -11.59250 -11.48049 -11.44782 -10.98019 -10.82599 -10.76643 -10.44160 -10.26927 -10.20187 -9.83435 -9.52997 -9.18360 -8.52299 -7.79174 -7.63267 -7.26739 -6.97332 -4.46478 1.64368 1.72949 2.47912 2.62195 2.72472 3.10587 3.21029 3.31858 3.80829 3.97048 4.11134 4.50495 5.11229 5.17006 5.38869 5.41805 5.52927 5.60667 5.76277 5.83568 5.98944 6.02087 6.10641 6.28905 6.43935 6.49172 6.62255 6.70071 6.74920 6.92178 7.09743 7.18874 7.38575 7.64479 7.72981 7.88047 7.96634 8.12601 8.38078 8.68544 8.79833 10.03771 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.006604 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.719035 B = 4238.930512 C = 4369.501888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.284 6.284 3 C 0.146 3.854 4 C -0.204 4.204 5 C -0.090 4.090 6 C -0.071 4.071 7 Cl -0.092 7.092 8 C -0.075 4.075 9 C 0.002 3.998 10 C -0.166 4.166 11 C -0.057 4.057 12 C -0.250 4.250 13 C -0.073 4.073 14 C -0.233 4.233 15 C 0.117 3.883 16 C -0.429 4.429 17 H 0.098 0.902 18 C 0.084 3.916 19 N -0.802 5.802 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.243 1.243 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 5.241 6.245 8.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.196 6.196 3 C 0.100 3.900 4 C -0.223 4.223 5 C -0.109 4.109 6 C -0.097 4.097 7 Cl -0.063 7.063 8 C -0.093 4.093 9 C 0.001 3.999 10 C -0.167 4.167 11 C -0.075 4.075 12 C -0.269 4.269 13 C -0.092 4.092 14 C -0.252 4.252 15 C 0.114 3.886 16 C -0.456 4.456 17 H 0.116 0.884 18 C -0.136 4.136 19 N -0.426 5.426 20 Si 0.734 3.266 21 H -0.196 1.196 22 H -0.218 1.218 23 H -0.166 1.166 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.222 5.150 5.962 8.186 hybrid contribution 0.405 -0.019 -0.438 0.597 sum -1.817 5.131 5.525 7.756 Atomic orbital electron populations 1.23005 0.79707 1.03653 1.00465 1.86311 1.19953 1.25900 1.87390 1.19279 0.91926 0.84226 0.94608 1.21004 0.99769 0.91694 1.09866 1.20607 0.92170 0.97488 1.00654 1.20558 0.92664 0.85646 1.10881 1.98314 1.81633 1.28916 1.97439 1.20979 0.99950 0.89242 0.99158 1.17979 0.89203 0.93006 0.99731 1.18271 1.04746 0.95127 0.98578 1.20635 0.95174 0.95968 0.95763 1.20231 1.07911 0.98765 1.00034 1.20386 0.97216 0.97451 0.94100 1.20739 1.05695 0.99291 0.99438 1.17565 0.89591 0.89165 0.92273 1.19515 1.07019 1.29051 0.90041 0.88375 1.26232 0.99736 0.91495 0.96092 1.69679 1.35633 1.33540 1.03721 0.86377 0.83197 0.79629 0.77407 1.19646 1.21831 1.16590 0.93476 0.92860 0.88573 0.85276 0.85689 0.84824 0.88756 0.88892 0.89054 0.88245 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.28 -5.70 8.54 -19.12 -0.16 -5.86 16 3 C 0.15 2.88 5.46 -38.74 -0.21 2.67 16 4 C -0.20 -3.37 9.03 -39.48 -0.36 -3.72 16 5 C -0.09 -1.42 9.82 -39.46 -0.39 -1.81 16 6 C -0.07 -1.20 6.31 -39.54 -0.25 -1.45 16 7 Cl -0.09 -1.36 28.94 -51.86 -1.50 -2.86 16 8 C -0.07 -1.40 9.52 -39.15 -0.37 -1.78 16 9 C 0.00 0.04 4.70 -104.76 -0.49 -0.45 16 10 C -0.17 -3.81 4.99 -104.23 -0.52 -4.33 16 11 C -0.06 -1.21 9.73 -39.28 -0.38 -1.59 16 12 C -0.25 -5.20 10.03 -39.39 -0.40 -5.59 16 13 C -0.07 -1.59 9.96 -39.97 -0.40 -1.99 16 14 C -0.23 -5.59 7.12 -39.29 -0.28 -5.87 16 15 C 0.12 2.94 4.94 -106.55 -0.53 2.42 16 16 C -0.43 -11.33 8.55 -37.92 -0.32 -11.66 16 17 H 0.10 2.72 5.65 -52.49 -0.30 2.43 16 18 C 0.08 2.18 5.40 -17.31 -0.09 2.08 16 19 N -0.80 -21.01 13.93 55.55 0.77 -20.24 16 20 Si 0.91 20.72 24.52 -169.99 -4.17 16.55 16 21 H -0.27 -5.98 6.71 56.52 0.38 -5.60 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.24 -5.70 6.87 56.52 0.39 -5.31 16 24 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 25 H 0.05 0.74 7.67 -51.93 -0.40 0.34 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.13 1.75 6.30 -52.48 -0.33 1.42 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 32 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.10 2.38 4.75 -52.49 -0.25 2.13 16 34 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 LS Contribution 300.74 15.07 4.53 4.53 Total: -1.00 -27.76 300.74 -7.90 -35.66 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -3.38 Total: 3.90 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -4.00 Total: -31.69 kcal Atomic # 7 Polarization: -21.01 SS G_CDS: 0.77 Total: -20.24 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.16 Total: -5.86 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.17 Total: 16.55 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.50 Total: -2.86 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.76 -7.90 -35.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245813029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.168 kcal (2) G-P(sol) polarization free energy of solvation -27.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds