Wall clock time and date at job start Tue Mar 31 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35802 * 116.99625 * 2 1 4 4 C 1.38549 * 120.12996 * 0.22826 * 3 2 1 5 5 C 1.38194 * 120.10137 * 180.27224 * 4 3 2 6 6 C 1.38618 * 120.36525 * 359.77905 * 5 4 3 7 7 Cl 1.73590 * 119.87433 * 179.97438 * 6 5 4 8 8 C 1.37960 * 120.25148 * 359.96974 * 6 5 4 9 9 C 1.39658 * 119.89240 * 0.02562 * 8 6 5 10 10 C 1.47739 * 120.17646 * 180.02562 * 9 8 6 11 11 C 1.39251 * 120.34429 * 65.02211 * 10 9 8 12 12 C 1.38027 * 119.97542 * 179.97438 * 11 10 9 13 13 C 1.38959 * 120.68770 * 359.73443 * 12 11 10 14 14 C 1.36414 * 120.69929 * 0.54790 * 13 12 11 15 15 C 1.40756 * 119.99088 * 359.45348 * 14 13 12 16 16 C 1.40847 * 120.33576 * 180.25137 * 15 14 13 17 17 H 1.07999 * 119.99952 * 150.02710 * 16 15 14 18 18 C 1.40048 * 119.99670 * 330.03008 * 16 15 14 19 19 N 1.30794 * 119.99888 * 161.74363 * 18 16 15 20 20 Si 1.86797 * 120.00118 * 341.73813 * 18 16 15 21 21 H 1.48501 * 109.47335 * 95.40427 * 20 18 16 22 22 H 1.48508 * 109.47369 * 215.39991 * 20 18 16 23 23 H 1.48494 * 109.47349 * 335.40097 * 20 18 16 24 24 H 1.09002 * 109.47005 * 300.00074 * 1 2 3 25 25 H 1.08992 * 109.47452 * 60.00126 * 1 2 3 26 26 H 1.09000 * 109.46761 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.94941 * 0.03097 * 4 3 2 28 28 H 1.08002 * 119.81593 * 179.74410 * 5 4 3 29 29 H 1.08001 * 120.04978 * 180.02562 * 8 6 5 30 30 H 1.08001 * 120.00616 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.65427 * 179.97438 * 12 11 10 32 32 H 1.07997 * 119.65393 * 180.30482 * 13 12 11 33 33 H 1.08000 * 120.00119 * 179.72112 * 14 13 12 34 34 H 0.96998 * 119.99913 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2934 2.3737 0.0048 5 6 1.9213 3.6047 -0.0009 6 6 3.3051 3.6855 -0.0068 7 17 4.0806 5.2386 -0.0146 8 6 4.0685 2.5363 -0.0064 9 6 3.4450 1.2866 -0.0006 10 6 4.2563 0.0519 0.0004 11 6 5.0703 -0.2540 1.0880 12 6 5.8247 -1.4099 1.0812 13 6 5.7784 -2.2806 -0.0008 14 6 4.9951 -2.0054 -1.0832 15 6 4.2138 -0.8348 -1.1068 16 6 3.3983 -0.5462 -2.2184 17 1 2.4856 0.0161 -2.0870 18 6 3.7710 -0.9884 -3.4939 19 7 2.8820 -1.0464 -4.4515 20 14 5.5376 -1.4953 -3.8274 21 1 5.6673 -2.9670 -3.6765 22 1 5.9120 -1.1048 -5.2105 23 1 6.4381 -0.8173 -2.8608 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2148 2.3186 0.0090 28 1 1.3306 4.5089 -0.0013 29 1 5.1464 2.6030 -0.0106 30 1 5.1113 0.4129 1.9365 31 1 6.4546 -1.6419 1.9273 32 1 6.3719 -3.1827 0.0135 33 1 4.9711 -2.6878 -1.9199 34 1 3.1403 -1.3524 -5.3350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245813029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:22 Heat of formation + Delta-G solvation = -17.470578 kcal Electronic energy + Delta-G solvation = -20257.785850 eV Core-core repulsion = 17145.652674 eV Total energy + Delta-G solvation = -3112.133177 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19431 -39.34295 -38.44322 -37.01428 -35.47949 -33.48174 -32.21232 -30.92977 -29.90171 -28.02349 -26.93002 -24.23980 -23.19496 -22.70900 -21.50550 -19.30210 -18.93733 -17.86109 -17.17660 -16.98104 -16.61596 -16.06755 -15.59513 -15.51932 -15.22517 -14.73066 -14.58539 -14.18772 -14.07059 -13.78351 -13.48705 -13.10917 -12.91822 -12.75647 -12.63316 -12.51847 -12.11438 -12.05137 -11.80992 -11.64942 -11.45217 -11.24385 -10.99296 -9.96330 -9.42862 -9.34262 -8.86772 -8.77066 -6.37565 0.23287 0.35454 0.84170 0.94052 1.24716 1.26352 1.41214 1.48483 2.12892 2.52361 2.65146 2.74376 3.55316 3.82881 3.92633 4.23434 4.26036 4.37141 4.41738 4.42639 4.45973 4.62497 4.72271 4.78548 4.86701 5.05764 5.07370 5.18349 5.25997 5.34551 5.40890 5.66071 5.70375 5.92720 5.98980 6.09595 6.33429 6.49119 6.61276 6.85565 6.91825 8.20837 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.006604 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.719035 B = 4238.930512 C = 4369.501888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.320 6.320 3 C 0.130 3.870 4 C -0.200 4.200 5 C -0.080 4.080 6 C -0.077 4.077 7 Cl -0.071 7.071 8 C -0.081 4.081 9 C -0.038 4.038 10 C -0.163 4.163 11 C -0.070 4.070 12 C -0.234 4.234 13 C -0.082 4.082 14 C -0.253 4.253 15 C 0.095 3.905 16 C -0.455 4.455 17 H 0.073 0.927 18 C 0.049 3.951 19 N -0.844 5.844 20 Si 0.954 3.046 21 H -0.261 1.261 22 H -0.281 1.281 23 H -0.255 1.255 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.134 0.866 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 6.180 8.006 10.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.219 4.219 5 C -0.098 4.098 6 C -0.103 4.103 7 Cl -0.043 7.043 8 C -0.099 4.099 9 C -0.039 4.039 10 C -0.165 4.165 11 C -0.088 4.088 12 C -0.253 4.253 13 C -0.100 4.100 14 C -0.272 4.272 15 C 0.092 3.908 16 C -0.484 4.484 17 H 0.091 0.909 18 C -0.166 4.166 19 N -0.470 5.470 20 Si 0.779 3.221 21 H -0.187 1.187 22 H -0.208 1.208 23 H -0.179 1.179 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.123 0.877 27 H 0.177 0.823 28 H 0.177 0.823 29 H 0.152 0.848 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.111 0.889 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.733 6.088 7.731 9.991 hybrid contribution 0.253 -0.205 -0.730 0.799 sum -1.481 5.882 7.001 9.263 Atomic orbital electron populations 1.23272 0.77384 1.04898 1.01946 1.86242 1.22603 1.26791 1.87609 1.19479 0.91905 0.85147 0.95110 1.21345 1.01202 0.90861 1.08506 1.21029 0.91978 0.98469 0.98345 1.20656 0.93271 0.86034 1.10366 1.98319 1.81431 1.27185 1.97330 1.21001 1.00188 0.89389 0.99370 1.18110 0.90103 0.93020 1.02629 1.18656 1.04283 0.95472 0.98053 1.21019 0.94900 0.96778 0.96080 1.20733 1.06631 0.97577 1.00357 1.20758 0.96997 0.98816 0.93451 1.20873 1.06722 0.99157 1.00421 1.17785 0.90089 0.90123 0.92762 1.19431 1.07208 1.30574 0.91166 0.90921 1.26773 1.02283 0.91681 0.95853 1.69707 1.36812 1.36149 1.04342 0.85656 0.79645 0.79638 0.77168 1.18658 1.20817 1.17925 0.90495 0.92633 0.87680 0.82292 0.82295 0.84804 0.86269 0.85355 0.85973 0.88877 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.67 16 2 O -0.32 -13.04 8.54 -91.33 -0.78 -13.82 16 3 C 0.13 5.12 5.46 22.81 0.12 5.24 16 4 C -0.20 -6.26 9.03 22.33 0.20 -6.05 16 5 C -0.08 -2.30 9.82 22.35 0.22 -2.08 16 6 C -0.08 -2.45 6.31 22.29 0.14 -2.31 16 7 Cl -0.07 -1.96 28.94 -2.72 -0.08 -2.03 16 8 C -0.08 -3.00 9.52 22.55 0.21 -2.78 16 9 C -0.04 -1.59 4.70 -19.96 -0.09 -1.68 16 10 C -0.16 -7.54 4.99 -19.61 -0.10 -7.64 16 11 C -0.07 -2.84 9.73 22.46 0.22 -2.62 16 12 C -0.23 -9.06 10.03 22.39 0.22 -8.83 16 13 C -0.08 -3.40 9.96 22.02 0.22 -3.18 16 14 C -0.25 -12.14 7.12 22.46 0.16 -11.98 16 15 C 0.10 4.87 4.94 -21.11 -0.10 4.77 16 16 C -0.45 -25.12 8.55 23.35 0.20 -24.92 16 17 H 0.07 4.27 5.65 -2.91 -0.02 4.26 16 18 C 0.05 2.63 5.40 85.29 0.46 3.09 16 19 N -0.84 -46.12 13.93 21.85 0.30 -45.81 16 20 Si 0.95 43.60 24.52 68.60 1.68 45.29 16 21 H -0.26 -11.34 6.71 99.48 0.67 -10.67 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.26 -12.00 6.87 99.48 0.68 -11.32 16 24 H 0.08 1.69 7.65 -2.39 -0.02 1.67 16 25 H 0.06 1.52 7.67 -2.39 -0.02 1.51 16 26 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.16 3.87 6.30 -2.91 -0.02 3.85 16 28 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 31 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 32 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 33 H 0.09 4.50 4.75 -2.91 -0.01 4.49 16 34 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16 Total: -1.00 -61.86 300.74 5.40 -56.46 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.07 Total: 19.26 kcal Atomic # 6 Polarization: -62.54 SS G_CDS: 3.20 Total: -59.34 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.30 Total: -45.81 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.78 Total: -13.82 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.68 Total: 45.29 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.03 kcal Total: -61.86 5.40 -56.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245813029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.991 kcal (2) G-P(sol) polarization free energy of solvation -61.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds