Wall clock time and date at job start Tue Mar 31 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35866 * 117.00076 * 2 1 4 4 C 1.38579 * 120.10345 * 0.03251 * 3 2 1 5 5 C 1.38171 * 120.07659 * 179.97438 * 4 3 2 6 6 C 1.38494 * 120.28995 * 359.97312 * 5 4 3 7 7 Cl 1.73603 * 119.89410 * 180.02562 * 6 5 4 8 8 C 1.38110 * 120.20738 * 359.76379 * 6 5 4 9 9 C 1.39296 * 119.91969 * 0.51452 * 8 6 5 10 10 C 1.48343 * 120.13946 * 179.74160 * 9 8 6 11 11 C 1.39762 * 120.00517 * 129.97390 * 10 9 8 12 12 C 1.38379 * 120.37812 * 180.25715 * 11 10 9 13 13 C 1.37719 * 120.38047 * 359.74768 * 12 11 10 14 14 C 1.40759 * 120.00072 * 0.02562 * 13 12 11 15 15 C 1.41416 * 120.19042 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00059 * 150.17215 * 15 14 13 17 17 C 1.39928 * 120.00259 * 330.17951 * 15 14 13 18 18 N 1.30829 * 120.00745 * 161.73171 * 17 15 14 19 19 Si 1.86811 * 119.99463 * 341.72803 * 17 15 14 20 20 H 1.48501 * 109.46861 * 95.41722 * 19 17 15 21 21 H 1.48499 * 109.46544 * 215.41316 * 19 17 15 22 22 H 1.48490 * 109.47048 * 335.41573 * 19 17 15 23 23 C 1.38756 * 120.00352 * 309.72632 * 10 9 8 24 24 H 1.09002 * 109.46991 * 299.99276 * 1 2 3 25 25 H 1.08995 * 109.47471 * 59.99970 * 1 2 3 26 26 H 1.09006 * 109.46758 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.96032 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.85696 * 179.97438 * 5 4 3 29 29 H 1.07999 * 120.03654 * 180.25929 * 8 6 5 30 30 H 1.08000 * 119.80725 * 359.97438 * 11 10 9 31 31 H 1.08005 * 119.80625 * 179.72908 * 12 11 10 32 32 H 1.08007 * 120.00295 * 179.97438 * 13 12 11 33 33 H 0.96988 * 120.00284 * 180.02562 * 18 17 15 34 34 H 1.07999 * 120.19019 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2931 2.3742 0.0007 5 6 1.9210 3.6050 0.0012 6 6 3.3037 3.6838 0.0016 7 17 4.0819 5.2356 0.0030 8 6 4.0654 2.5317 0.0064 9 6 3.4415 1.2863 0.0000 10 6 4.2548 0.0457 -0.0006 11 6 3.9841 -0.9680 0.9226 12 6 4.7414 -2.1261 0.9324 13 6 5.7671 -2.2953 0.0290 14 6 6.0506 -1.2866 -0.9109 15 6 7.1026 -1.4563 -1.8407 16 1 7.0455 -0.9878 -2.8122 17 6 8.2174 -2.2312 -1.5022 18 7 9.0066 -2.6872 -2.4407 19 14 8.5788 -2.6146 0.2901 20 1 8.0062 -3.9399 0.6379 21 1 10.0481 -2.6384 0.5045 22 1 7.9696 -1.5704 1.1522 23 6 5.2812 -0.1105 -0.9212 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2145 2.3188 0.0008 28 1 1.3309 4.5096 0.0013 29 1 5.1434 2.5964 0.0110 30 1 3.1823 -0.8448 1.6355 31 1 4.5270 -2.9018 1.6527 32 1 6.3546 -3.2015 0.0423 33 1 9.7791 -3.2246 -2.2060 34 1 5.4909 0.6693 -1.6384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245813689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:23 Heat of formation + Delta-G solvation = -21.330744 kcal Electronic energy + Delta-G solvation = -19537.203384 eV Core-core repulsion = 16424.902818 eV Total energy + Delta-G solvation = -3112.300566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.31741 -39.42736 -38.56477 -37.12703 -35.59003 -33.58763 -32.16348 -31.01194 -29.98437 -28.02497 -27.03133 -24.55947 -23.24911 -22.22474 -22.10032 -19.53704 -18.74268 -17.73232 -17.31726 -17.06073 -16.70520 -16.34878 -15.72110 -15.56898 -15.13177 -14.78766 -14.61810 -14.29359 -14.16012 -13.84487 -13.46974 -13.25273 -13.00609 -12.78302 -12.67335 -12.51940 -12.29747 -12.07687 -11.81935 -11.64152 -11.51626 -11.45134 -11.01686 -10.22277 -9.53048 -9.42169 -8.88854 -8.82643 -6.50088 -0.01409 0.21355 0.81559 0.91393 1.19251 1.26399 1.40972 1.49347 2.13090 2.38972 2.50967 2.68974 3.49558 3.62397 3.82170 4.09247 4.14690 4.33301 4.42019 4.46245 4.48317 4.53988 4.68055 4.76173 4.82217 4.94205 4.98733 5.06514 5.15787 5.20977 5.32612 5.55159 5.61958 5.82375 5.89150 5.99099 6.23694 6.38605 6.46477 6.74142 6.83527 8.20293 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.005029 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.710159 B = 5566.229343 C = 6694.498479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.137 3.863 4 C -0.189 4.189 5 C -0.066 4.066 6 C -0.078 4.078 7 Cl -0.071 7.071 8 C -0.074 4.074 9 C -0.078 4.078 10 C -0.015 4.015 11 C -0.192 4.192 12 C -0.085 4.085 13 C -0.245 4.245 14 C 0.072 3.928 15 C -0.489 4.489 16 H 0.053 0.947 17 C 0.049 3.951 18 N -0.853 5.853 19 Si 0.964 3.036 20 H -0.256 1.256 21 H -0.277 1.277 22 H -0.255 1.255 23 C -0.203 4.203 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.293 0.707 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.629 9.680 8.112 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.091 3.909 4 C -0.207 4.207 5 C -0.085 4.085 6 C -0.104 4.104 7 Cl -0.042 7.042 8 C -0.093 4.093 9 C -0.079 4.079 10 C -0.015 4.015 11 C -0.211 4.211 12 C -0.103 4.103 13 C -0.264 4.264 14 C 0.070 3.930 15 C -0.518 4.518 16 H 0.071 0.929 17 C -0.165 4.165 18 N -0.479 5.479 19 Si 0.788 3.212 20 H -0.181 1.181 21 H -0.204 1.204 22 H -0.178 1.178 23 C -0.223 4.223 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.130 0.870 27 H 0.191 0.809 28 H 0.183 0.817 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.260 9.495 7.961 20.444 hybrid contribution 0.774 -0.145 -0.076 0.791 sum -15.487 9.351 7.885 19.734 Atomic orbital electron populations 1.23432 0.76344 1.05586 1.02724 1.86231 1.23465 1.26212 1.87756 1.19189 0.90859 0.85732 0.95132 1.21423 1.01692 0.90149 1.07446 1.21156 0.91526 0.99166 0.96640 1.20729 0.93578 0.86016 1.10102 1.98347 1.81441 1.27150 1.97257 1.20976 1.00330 0.89752 0.98232 1.18275 0.90778 0.92688 1.06153 1.18445 0.94173 0.93094 0.95767 1.20717 1.03142 0.94733 1.02490 1.20914 0.94529 0.97411 0.97396 1.21195 1.02988 0.99342 1.02915 1.17773 0.92515 0.91207 0.91532 1.19417 1.03144 1.28269 1.01011 0.92886 1.26773 0.94808 0.91459 1.03425 1.69723 1.14347 1.26879 1.36993 0.85510 0.76873 0.80463 0.78400 1.18122 1.20372 1.17835 1.21163 1.00834 0.97608 1.02646 0.90642 0.91285 0.86987 0.80948 0.81665 0.85401 0.86190 0.85211 0.88431 0.89658 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -9.09 8.81 -92.04 -0.81 -9.90 16 3 C 0.14 3.96 6.59 22.72 0.15 4.11 16 4 C -0.19 -3.92 9.03 22.34 0.20 -3.72 16 5 C -0.07 -1.38 9.81 22.31 0.22 -1.16 16 6 C -0.08 -2.04 6.31 22.30 0.14 -1.90 16 7 Cl -0.07 -1.70 28.95 -2.72 -0.08 -1.78 16 8 C -0.07 -2.40 9.28 22.49 0.21 -2.19 16 9 C -0.08 -2.75 5.48 -19.96 -0.11 -2.86 16 10 C -0.01 -0.62 5.27 -20.09 -0.11 -0.73 16 11 C -0.19 -7.77 8.78 22.67 0.20 -7.57 16 12 C -0.08 -3.55 10.01 22.18 0.22 -3.33 16 13 C -0.25 -11.94 7.17 22.76 0.16 -11.78 16 14 C 0.07 3.83 5.10 -21.32 -0.11 3.72 16 15 C -0.49 -28.49 9.57 23.46 0.22 -28.27 16 16 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 17 C 0.05 2.73 5.40 85.25 0.46 3.19 16 18 N -0.85 -48.10 13.93 21.82 0.30 -47.80 16 19 Si 0.96 44.00 24.52 68.60 1.68 45.68 16 20 H -0.26 -10.95 6.71 99.48 0.67 -10.29 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.25 -11.91 6.86 99.48 0.68 -11.23 16 23 C -0.20 -9.93 9.25 22.96 0.21 -9.71 16 24 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 25 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 26 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.17 2.21 6.30 -2.91 -0.02 2.19 16 28 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.13 4.35 8.04 -2.91 -0.02 4.33 16 30 H 0.12 4.27 7.65 -2.91 -0.02 4.25 16 31 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 32 H 0.10 4.72 4.72 -2.91 -0.01 4.71 16 33 H 0.29 14.82 8.30 -92.72 -0.77 14.05 16 34 H 0.10 4.62 8.04 -2.91 -0.02 4.59 16 Total: -1.00 -65.32 304.42 5.35 -59.98 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.06 Total: 14.67 kcal Atomic # 6 Polarization: -64.05 SS G_CDS: 3.19 Total: -60.86 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.30 Total: -47.80 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.81 Total: -9.90 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.68 Total: 45.68 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -65.32 5.35 -59.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245813689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.645 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds