Wall clock time and date at job start Tue Mar 31 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35801 * 117.00080 * 2 1 4 4 C 1.38560 * 120.12630 * 0.28180 * 3 2 1 5 5 C 1.38190 * 120.09540 * 180.24948 * 4 3 2 6 6 C 1.38605 * 120.35496 * 359.74414 * 5 4 3 7 7 Cl 1.73597 * 119.87551 * 179.97438 * 6 5 4 8 8 C 1.37978 * 120.24988 * 359.97438 * 6 5 4 9 9 C 1.39608 * 119.89888 * 0.02562 * 8 6 5 10 10 C 1.47849 * 120.17646 * 179.97438 * 9 8 6 11 11 C 1.40007 * 119.88462 * 130.24578 * 10 9 8 12 12 C 1.36217 * 120.11549 * 180.30138 * 11 10 9 13 13 C 1.40955 * 119.87915 * 359.48124 * 12 11 10 14 14 C 1.40991 * 120.10817 * 180.27408 * 13 12 11 15 15 H 1.08006 * 120.00015 * 204.69629 * 14 13 12 16 16 C 1.39979 * 120.00184 * 24.70745 * 14 13 12 17 17 N 1.30817 * 120.00166 * 17.95741 * 16 14 13 18 18 Si 1.86808 * 119.99885 * 197.96616 * 16 14 13 19 19 H 1.48503 * 109.46996 * 89.99293 * 18 16 14 20 20 H 1.48498 * 109.47102 * 209.99452 * 18 16 14 21 21 H 1.48500 * 109.46876 * 329.99879 * 18 16 14 22 22 C 1.40952 * 119.77942 * 0.24839 * 13 12 11 23 23 C 1.36221 * 119.88048 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.47336 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47117 * 299.99852 * 1 2 3 26 26 H 1.09000 * 109.47305 * 59.99406 * 1 2 3 27 27 H 1.07991 * 119.95022 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.81546 * 179.76583 * 5 4 3 29 29 H 1.08002 * 120.04854 * 179.97438 * 8 6 5 30 30 H 1.08003 * 119.94459 * 0.05366 * 11 10 9 31 31 H 1.08000 * 120.05817 * 179.75696 * 12 11 10 32 32 H 0.97007 * 119.99915 * 180.02562 * 17 16 14 33 33 H 1.07996 * 120.06547 * 180.02562 * 22 13 12 34 34 H 1.07995 * 119.94275 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2934 2.3737 0.0059 5 6 1.9215 3.6047 0.0007 6 6 3.3052 3.6850 -0.0051 7 17 4.0811 5.2379 -0.0123 8 6 4.0682 2.5354 -0.0052 9 6 3.4447 1.2863 0.0000 10 6 4.2563 0.0505 -0.0006 11 6 3.9876 -0.9611 0.9292 12 6 4.7364 -2.0989 0.9369 13 6 5.7762 -2.2615 -0.0007 14 6 6.5506 -3.4398 -0.0009 15 1 7.5523 -3.4276 -0.4044 16 6 6.0209 -4.6254 0.5217 17 7 4.7287 -4.7493 0.6832 18 14 7.1595 -6.0309 0.9887 19 1 7.5730 -5.8824 2.4072 20 1 6.4489 -7.3229 0.8128 21 1 8.3617 -6.0044 0.1173 22 6 6.0391 -1.2425 -0.9384 23 6 5.2880 -0.1060 -0.9340 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.2149 2.3187 0.0101 28 1 1.3308 4.5088 0.0015 29 1 5.1462 2.6018 -0.0101 30 1 3.1877 -0.8374 1.6444 31 1 4.5307 -2.8770 1.6571 32 1 4.3617 -5.5708 1.0456 33 1 6.8344 -1.3624 -1.6591 34 1 5.4888 0.6756 -1.6517 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245814586.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:25 Heat of formation + Delta-G solvation = -21.338246 kcal Electronic energy + Delta-G solvation = -19427.540523 eV Core-core repulsion = 16315.239631 eV Total energy + Delta-G solvation = -3112.300891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19179 -39.28709 -38.49357 -37.07642 -35.68462 -33.17555 -31.50476 -30.88280 -30.37373 -28.10131 -26.96877 -23.94815 -23.27972 -22.36968 -21.78200 -19.26332 -19.01388 -17.59566 -17.30057 -16.96924 -16.58497 -15.92877 -15.70606 -15.25383 -15.15304 -14.71827 -14.36820 -14.19988 -13.87611 -13.60257 -13.47330 -13.02889 -12.93235 -12.76653 -12.69711 -12.50361 -12.23180 -12.09720 -11.76241 -11.59607 -11.41460 -11.23711 -11.08146 -10.06056 -9.43719 -9.32044 -8.79046 -8.64700 -6.32220 0.12753 0.29248 1.00381 1.20751 1.23930 1.38526 1.52025 1.54023 2.19821 2.47298 2.59049 2.81323 3.72288 3.79456 3.90850 4.21227 4.23849 4.42348 4.42857 4.47499 4.49413 4.60756 4.73911 4.92529 5.03306 5.05916 5.13035 5.24654 5.26668 5.39510 5.42286 5.66373 5.72292 6.00366 6.09807 6.22427 6.34943 6.55634 6.67660 6.90382 7.02413 8.29065 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.004087 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.181235 B = 6848.872551 C = 7824.889441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.116 3.884 4 C -0.188 4.188 5 C -0.081 4.081 6 C -0.072 4.072 7 Cl -0.071 7.071 8 C -0.084 4.084 9 C -0.044 4.044 10 C -0.183 4.183 11 C -0.065 4.065 12 C -0.194 4.194 13 C 0.087 3.913 14 C -0.493 4.493 15 H 0.079 0.921 16 C 0.036 3.964 17 N -0.817 5.817 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.245 4.245 23 C -0.071 4.071 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.290 0.710 33 H 0.100 0.900 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 11.656 0.087 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.070 3.930 4 C -0.207 4.207 5 C -0.099 4.099 6 C -0.099 4.099 7 Cl -0.043 7.043 8 C -0.103 4.103 9 C -0.045 4.045 10 C -0.184 4.184 11 C -0.083 4.083 12 C -0.213 4.213 13 C 0.085 3.915 14 C -0.522 4.522 15 H 0.097 0.903 16 C -0.180 4.180 17 N -0.442 5.442 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.181 1.181 22 C -0.265 4.265 23 C -0.089 4.089 24 H 0.123 0.877 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.183 0.817 28 H 0.179 0.821 29 H 0.151 0.849 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.342 11.423 0.143 14.145 hybrid contribution 0.367 -0.688 0.140 0.792 sum -7.975 10.735 0.283 13.376 Atomic orbital electron populations 1.23361 0.76799 1.05118 1.02599 1.86235 1.23137 1.26840 1.88032 1.19451 0.91572 0.85322 0.96610 1.21358 1.01361 0.90405 1.07575 1.21069 0.91780 0.98712 0.98349 1.20716 0.93406 0.86008 1.09744 1.98336 1.81465 1.27200 1.97268 1.21007 1.00269 0.89373 0.99676 1.18258 0.90164 0.92810 1.03273 1.18102 1.01810 0.95359 1.03164 1.20483 0.97207 0.93178 0.97434 1.20915 1.01058 0.97669 1.01659 1.18015 0.91506 0.92663 0.89341 1.19870 1.01487 0.94249 1.36581 0.90330 1.26827 0.96598 1.02471 0.92140 1.69892 1.13934 1.28421 1.31964 0.85173 0.78714 0.76005 0.79645 1.18634 1.19090 1.18073 1.20836 1.05291 0.97631 1.02700 1.20574 0.94543 0.96603 0.97166 0.87694 0.90948 0.91063 0.81684 0.82091 0.84932 0.88733 0.88160 0.89931 0.88193 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -11.36 8.83 -91.32 -0.81 -12.17 16 3 C 0.12 3.87 6.60 22.81 0.15 4.02 16 4 C -0.19 -4.61 9.03 22.34 0.20 -4.41 16 5 C -0.08 -1.86 9.82 22.35 0.22 -1.64 16 6 C -0.07 -1.96 6.31 22.30 0.14 -1.82 16 7 Cl -0.07 -1.70 28.95 -2.72 -0.08 -1.78 16 8 C -0.08 -2.77 9.28 22.54 0.21 -2.56 16 9 C -0.04 -1.67 5.48 -19.94 -0.11 -1.78 16 10 C -0.18 -8.34 5.30 -19.88 -0.11 -8.45 16 11 C -0.06 -3.19 8.71 22.23 0.19 -2.99 16 12 C -0.19 -10.57 8.63 22.46 0.19 -10.37 16 13 C 0.09 4.83 5.57 -21.27 -0.12 4.71 16 14 C -0.49 -26.90 9.03 23.37 0.21 -26.69 16 15 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 16 C 0.04 1.80 5.13 85.27 0.44 2.24 16 17 N -0.82 -43.01 10.96 21.83 0.24 -42.77 16 18 Si 0.98 38.05 29.60 68.60 2.03 40.09 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 21 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 22 C -0.25 -12.42 9.73 22.46 0.22 -12.21 16 23 C -0.07 -3.25 9.43 22.23 0.21 -3.04 16 24 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.07 1.24 7.65 -2.39 -0.02 1.23 16 26 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 27 H 0.17 2.82 6.29 -2.92 -0.02 2.80 16 28 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 29 H 0.13 4.30 8.04 -2.91 -0.02 4.28 16 30 H 0.09 4.41 7.67 -2.91 -0.02 4.39 16 31 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 32 H 0.29 13.70 8.30 -92.70 -0.77 12.93 16 33 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 34 H 0.11 4.52 8.03 -2.91 -0.02 4.50 16 Total: -1.00 -62.42 309.48 5.67 -56.76 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.12 Total: 23.42 kcal Atomic # 6 Polarization: -66.71 SS G_CDS: 3.16 Total: -63.55 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.24 Total: -42.77 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.81 Total: -12.17 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -62.42 5.67 -56.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245814586.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.417 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds