Wall clock time and date at job start Tue Mar 31 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38335 * 119.88376 * 2 1 4 4 C 1.37984 * 120.14082 * 179.76239 * 3 2 1 5 5 C 1.39425 * 119.89697 * 0.51862 * 4 3 2 6 6 C 1.48307 * 120.11562 * 179.76383 * 5 4 3 7 7 C 1.40032 * 119.98104 * 127.79850 * 6 5 4 8 8 N 1.32179 * 120.29247 * 179.97438 * 7 6 5 9 9 C 1.31882 * 120.28522 * 359.75295 * 8 7 6 10 10 C 1.40830 * 119.96087 * 0.49942 * 9 8 7 11 11 C 1.41332 * 120.14252 * 179.75389 * 10 9 8 12 12 H 1.07995 * 120.00372 * 5.48518 * 11 10 9 13 13 C 1.40050 * 119.99715 * 185.48672 * 11 10 9 14 14 N 1.30729 * 120.00033 * 184.68613 * 13 11 10 15 15 Si 1.86800 * 120.00075 * 4.68871 * 13 11 10 16 16 H 1.48501 * 109.47070 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47256 * 299.99764 * 15 13 11 18 18 H 1.48498 * 109.47344 * 59.99790 * 15 13 11 19 19 N 1.32514 * 119.98655 * 307.77216 * 6 5 4 20 20 C 1.39345 * 119.76217 * 359.48519 * 5 4 3 21 21 C 1.50698 * 120.07323 * 180.27687 * 20 5 4 22 22 C 1.38149 * 119.85854 * 0.25415 * 20 5 4 23 23 Cl 1.73600 * 119.94847 * 179.97438 * 22 20 5 24 24 H 1.09001 * 109.46715 * 269.97889 * 1 2 3 25 25 H 1.08997 * 109.46874 * 29.97130 * 1 2 3 26 26 H 1.08997 * 109.47302 * 149.97695 * 1 2 3 27 27 H 1.07995 * 119.92935 * 0.04567 * 3 2 1 28 28 H 1.08001 * 120.05535 * 180.25416 * 4 3 2 29 29 H 1.08000 * 119.85673 * 359.97438 * 7 6 5 30 30 H 1.07996 * 120.02427 * 180.27742 * 9 8 7 31 31 H 0.97001 * 120.00120 * 354.94698 * 14 13 11 32 32 H 1.09004 * 109.46921 * 92.85763 * 21 20 5 33 33 H 1.09001 * 109.47396 * 212.86147 * 21 20 5 34 34 H 1.09002 * 109.47120 * 332.86569 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1994 0.0000 4 6 3.5761 1.2056 0.0049 5 6 4.2765 0.0001 -0.0010 6 6 5.7596 0.0011 -0.0010 7 6 6.4598 -0.7465 0.9538 8 7 7.7816 -0.7504 0.9591 9 6 8.4524 -0.0541 0.0622 10 6 7.7596 0.7061 -0.8999 11 6 8.4747 1.4579 -1.8596 12 1 9.5505 1.3814 -1.9132 13 6 7.7879 2.3021 -2.7411 14 7 8.4379 2.9270 -3.6876 15 14 5.9430 2.5354 -2.5642 16 1 5.4598 3.4714 -3.6110 17 1 5.2613 1.2252 -2.7181 18 1 5.6412 3.0957 -1.2224 19 7 6.4214 0.7090 -0.9048 20 6 3.5780 -1.2057 -0.0010 21 6 4.3280 -2.5128 -0.0011 22 6 2.1966 -1.2003 -0.0005 23 17 1.3241 -2.7011 -0.0012 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6532 2.1329 0.0007 28 1 4.1128 2.1428 0.0091 29 1 5.9176 -1.3225 1.6891 30 1 9.5323 -0.0639 0.0676 31 1 9.4048 2.8643 -3.7349 32 1 4.4644 -2.8535 1.0253 33 1 3.7601 -3.2576 -0.5587 34 1 5.3021 -2.3728 -0.4698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245823756.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:23 Heat of formation + Delta-G solvation = 13.777909 kcal Electronic energy + Delta-G solvation = -20004.320756 eV Core-core repulsion = 16925.835367 eV Total energy + Delta-G solvation = -3078.485389 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.62749 -40.30564 -37.47635 -36.28353 -35.35821 -34.46242 -32.95745 -31.95989 -28.54032 -28.04385 -27.53292 -24.88529 -23.51623 -23.02187 -21.43846 -20.58752 -18.26579 -17.85479 -17.48323 -17.03031 -16.18693 -15.94224 -15.47721 -15.34454 -15.13227 -14.75281 -14.53573 -14.16601 -14.03830 -13.63238 -13.43259 -13.20016 -13.18596 -12.94205 -12.89549 -12.44438 -12.39274 -12.24951 -11.90187 -11.68349 -11.59332 -11.40082 -11.08498 -10.26193 -9.75860 -9.66951 -9.46232 -9.11544 -6.99259 -0.22593 0.15189 0.46100 0.67589 1.11013 1.49808 1.61625 1.94151 2.34092 2.44758 2.58859 3.23228 3.39898 3.67816 3.81467 3.87220 3.92820 4.06007 4.26315 4.31591 4.49974 4.55574 4.62466 4.68543 4.76728 4.78516 4.84952 4.88941 5.10371 5.21446 5.24524 5.25808 5.36280 5.38579 5.45528 5.76321 5.82506 6.05304 6.37823 6.86933 7.34971 7.80590 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.005986 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.458000 B = 4676.490463 C = 5585.899040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.066 4.066 3 C -0.112 4.112 4 C -0.099 4.099 5 C -0.052 4.052 6 C 0.166 3.834 7 C -0.083 4.083 8 N -0.424 5.424 9 C -0.054 4.054 10 C 0.189 3.811 11 C -0.478 4.478 12 H 0.084 0.916 13 C 0.020 3.980 14 N -0.810 5.810 15 Si 1.169 2.831 16 H -0.324 1.324 17 H -0.280 1.280 18 H -0.285 1.285 19 N -0.549 5.549 20 C -0.057 4.057 21 C -0.114 4.114 22 C -0.047 4.047 23 Cl -0.052 7.052 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.166 0.834 28 H 0.118 0.882 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.288 0.712 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 -5.648 6.625 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.067 4.067 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.054 4.054 6 C 0.022 3.978 7 C -0.240 4.240 8 N -0.135 5.135 9 C -0.223 4.223 10 C 0.063 3.937 11 C -0.511 4.511 12 H 0.102 0.898 13 C -0.200 4.200 14 N -0.432 5.432 15 Si 1.001 2.999 16 H -0.257 1.257 17 H -0.208 1.208 18 H -0.213 1.213 19 N -0.272 5.272 20 C -0.059 4.059 21 C -0.171 4.171 22 C -0.074 4.074 23 Cl -0.023 7.023 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.183 0.817 28 H 0.136 0.864 29 H 0.183 0.817 30 H 0.172 0.828 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.296 -5.068 5.908 18.967 hybrid contribution 2.455 -0.689 0.399 2.581 sum -14.841 -5.758 6.307 17.123 Atomic orbital electron populations 1.20952 0.87588 1.04496 1.04107 1.20198 0.98454 0.90499 0.97505 1.21208 0.92426 0.98861 1.00441 1.21483 0.95450 0.97073 0.97837 1.18360 0.89623 0.93756 1.03632 1.20678 0.93530 0.92322 0.91233 1.23026 0.90086 1.07375 1.03537 1.67801 1.09021 1.15417 1.21234 1.23346 1.00361 1.02271 0.96370 1.19600 0.88780 0.92261 0.93010 1.20817 0.96210 1.20617 1.13497 0.89806 1.28371 1.12132 0.90078 0.89376 1.70635 1.12415 1.34044 1.26148 0.81746 0.68607 0.75379 0.74129 1.25677 1.20807 1.21270 1.67523 1.08207 1.25924 1.25501 1.19773 0.92232 0.95240 0.98666 1.20927 0.99247 0.93046 1.03841 1.20557 0.90779 0.87945 1.08102 1.98326 1.75487 1.31584 1.96865 0.89064 0.89176 0.90657 0.81675 0.86377 0.81710 0.82816 0.90025 0.88797 0.89801 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.61 71.24 0.68 -1.08 16 2 C -0.07 -1.52 5.89 -19.80 -0.12 -1.64 16 3 C -0.11 -2.79 9.68 22.23 0.22 -2.58 16 4 C -0.10 -3.33 9.42 22.50 0.21 -3.11 16 5 C -0.05 -1.91 5.59 -20.05 -0.11 -2.02 16 6 C 0.17 7.19 5.47 42.16 0.23 7.42 16 7 C -0.08 -3.41 9.10 85.08 0.77 -2.64 16 8 N -0.42 -18.93 10.47 -192.05 -2.01 -20.94 16 9 C -0.05 -2.56 10.98 85.32 0.94 -1.62 16 10 C 0.19 9.67 6.38 40.23 0.26 9.92 16 11 C -0.48 -25.42 9.59 23.47 0.23 -25.19 16 12 H 0.08 4.40 8.05 -2.91 -0.02 4.37 16 13 C 0.02 1.08 5.52 85.30 0.47 1.55 16 14 N -0.81 -43.17 13.65 21.84 0.30 -42.87 16 15 Si 1.17 56.11 24.96 68.60 1.71 57.82 16 16 H -0.32 -15.20 7.11 99.48 0.71 -14.49 16 17 H -0.28 -13.78 6.60 99.48 0.66 -13.12 16 18 H -0.28 -13.22 6.37 99.48 0.63 -12.59 16 19 N -0.55 -27.17 4.62 -177.64 -0.82 -27.99 16 20 C -0.06 -1.79 5.88 -19.62 -0.12 -1.91 16 21 C -0.11 -3.26 8.07 71.24 0.58 -2.68 16 22 C -0.05 -1.24 6.30 22.29 0.14 -1.10 16 23 Cl -0.05 -1.12 25.67 -2.72 -0.07 -1.19 16 24 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 26 H 0.07 1.14 6.89 -2.39 -0.02 1.13 16 27 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 28 H 0.12 4.22 6.94 -2.91 -0.02 4.20 16 29 H 0.17 5.75 7.14 -2.91 -0.02 5.73 16 30 H 0.15 6.61 8.06 -2.91 -0.02 6.58 16 31 H 0.29 14.64 8.72 -92.71 -0.81 13.84 16 32 H 0.09 2.31 7.74 -2.39 -0.02 2.29 16 33 H 0.08 2.11 7.03 -2.39 -0.02 2.09 16 34 H 0.05 1.70 6.32 -2.39 -0.02 1.68 16 Total: -1.00 -59.48 298.09 4.46 -55.02 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.97 Total: 6.83 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 4.38 Total: -26.68 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -2.53 Total: -91.80 kcal Atomic # 14 Polarization: 56.11 SS G_CDS: 1.71 Total: 57.82 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -59.48 4.46 -55.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245823756.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.800 kcal (2) G-P(sol) polarization free energy of solvation -59.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds