Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38402 * 119.86007 * 2 1 4 4 C 1.37910 * 120.16661 * 179.97438 * 3 2 1 5 5 C 1.39674 * 119.87082 * 0.02562 * 4 3 2 6 6 C 1.47941 * 120.14149 * 180.02562 * 5 4 3 7 7 C 1.40429 * 120.78655 * 309.99929 * 6 5 4 8 8 N 1.31594 * 119.08896 * 179.97438 * 7 6 5 9 9 C 1.33641 * 120.83208 * 0.02562 * 8 7 6 10 10 C 1.41090 * 119.13073 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00441 * 359.97438 * 10 9 8 12 12 C 1.40145 * 120.00046 * 180.02562 * 10 9 8 13 13 N 1.30665 * 119.99878 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00518 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47108 * 59.99215 * 14 12 10 16 16 H 1.48491 * 109.47375 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46676 * 299.99769 * 14 12 10 18 18 N 1.33645 * 121.73257 * 359.97216 * 9 8 7 19 19 C 1.31589 * 120.83266 * 0.02608 * 18 9 8 20 20 C 1.39616 * 119.72022 * 0.27584 * 5 4 3 21 21 C 1.50700 * 120.08122 * 179.72594 * 20 5 4 22 22 C 1.38059 * 119.83618 * 359.40443 * 20 5 4 23 23 Cl 1.73595 * 119.94093 * 180.29664 * 22 20 5 24 24 H 1.08997 * 109.47308 * 89.99414 * 1 2 3 25 25 H 1.08994 * 109.47306 * 209.99820 * 1 2 3 26 26 H 1.09002 * 109.46566 * 329.99771 * 1 2 3 27 27 H 1.08001 * 119.92022 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.06426 * 180.02562 * 4 3 2 29 29 H 1.07993 * 120.45733 * 0.25688 * 7 6 5 30 30 H 0.96995 * 120.00464 * 180.02562 * 13 12 10 31 31 H 1.07999 * 120.45166 * 179.97438 * 19 18 9 32 32 H 1.08998 * 109.47344 * 90.00417 * 21 20 5 33 33 H 1.09005 * 109.46918 * 209.99773 * 21 20 5 34 34 H 1.09001 * 109.47430 * 329.99740 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2003 0.0000 4 6 3.5752 1.2077 0.0005 5 6 4.2773 0.0002 0.0005 6 6 5.7567 0.0011 0.0017 7 6 6.4757 0.7775 -0.9216 8 7 7.7910 0.7536 -0.8904 9 6 8.4415 0.0033 0.0040 10 6 9.8524 0.0042 0.0050 11 1 10.3926 0.6058 -0.7110 12 6 10.5530 -0.7763 0.9346 13 7 9.8995 -1.5045 1.8007 14 14 12.4209 -0.7746 0.9365 15 1 12.9144 0.6044 1.1815 16 1 12.9157 -1.6756 2.0081 17 1 12.9176 -1.2516 -0.3791 18 7 7.7906 -0.7479 0.8975 19 6 6.4753 -0.7742 0.9260 20 6 3.5771 -1.2076 -0.0058 21 6 4.3264 -2.5151 -0.0121 22 6 2.1965 -1.2013 0.0003 23 17 1.3231 -2.7015 0.0002 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.6525 2.1335 0.0004 28 1 4.1112 2.1452 0.0010 29 1 5.9563 1.3892 -1.6443 30 1 10.3843 -2.0444 2.4443 31 1 5.9556 -1.3837 1.6505 32 1 4.5066 -2.8356 1.0140 33 1 3.7350 -3.2703 -0.5300 34 1 5.2794 -2.3853 -0.5250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245826868.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = 45.638359 kcal Electronic energy + Delta-G solvation = -19472.300964 eV Core-core repulsion = 16395.197147 eV Total energy + Delta-G solvation = -3077.103817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65449 -38.53582 -36.24568 -34.30480 -33.48043 -31.98308 -31.54764 -30.12357 -27.45773 -26.89125 -25.07578 -22.96455 -22.00799 -21.43142 -20.05002 -17.99855 -16.34719 -16.23590 -15.57397 -15.04118 -14.69046 -14.59175 -14.13773 -13.51989 -13.11485 -12.97883 -12.94204 -12.75988 -12.40268 -12.28755 -11.95060 -11.80392 -11.42833 -11.38027 -11.17628 -11.07931 -10.96238 -10.83938 -10.49330 -10.41440 -9.61715 -9.23490 -9.22796 -8.63800 -8.35054 -7.68360 -7.33775 -6.68343 -4.85933 1.40146 1.53169 2.34415 2.52573 2.89407 2.97096 2.99776 3.04038 3.76570 3.93717 4.51087 4.94382 4.97766 5.28046 5.43706 5.51438 5.62980 5.68415 5.70284 5.75471 5.80520 5.83205 5.99232 6.04867 6.06917 6.19153 6.34232 6.51459 6.57249 6.68131 6.69636 6.86127 6.99978 7.16720 7.24694 7.52952 8.00494 8.34169 8.41612 8.97372 9.95719 10.13534 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033192 B = 0.003835 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.364211 B = 7299.181547 C = 7891.485225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C -0.111 4.111 4 C -0.118 4.118 5 C 0.034 3.966 6 C -0.333 4.333 7 C 0.189 3.811 8 N -0.594 5.594 9 C 0.382 3.618 10 C -0.382 4.382 11 H 0.095 0.905 12 C 0.062 3.938 13 N -0.699 5.699 14 Si 0.922 3.078 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.261 1.261 18 N -0.508 5.508 19 C 0.186 3.814 20 C -0.080 4.080 21 C -0.113 4.113 22 C -0.030 4.030 23 Cl -0.082 7.082 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.279 0.721 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.117 0.020 -0.869 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.105 4.105 3 C -0.129 4.129 4 C -0.136 4.136 5 C 0.032 3.968 6 C -0.343 4.343 7 C 0.014 3.986 8 N -0.312 5.312 9 C 0.149 3.851 10 C -0.415 4.415 11 H 0.113 0.887 12 C -0.166 4.166 13 N -0.319 5.319 14 Si 0.745 3.255 15 H -0.186 1.186 16 H -0.199 1.199 17 H -0.186 1.186 18 N -0.224 5.224 19 C 0.009 3.991 20 C -0.081 4.081 21 C -0.170 4.170 22 C -0.057 4.057 23 Cl -0.054 7.054 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.955 -0.292 -0.664 10.979 hybrid contribution -0.430 -0.120 0.082 0.454 sum -11.385 -0.412 -0.582 11.408 Atomic orbital electron populations 1.20763 0.91056 1.02759 1.02205 1.19589 0.96039 0.91420 1.03489 1.20783 0.94078 0.96482 1.01584 1.21377 0.93520 0.97967 1.00756 1.18507 0.92588 0.90796 0.94956 1.19605 0.91085 1.14398 1.09205 1.22617 0.90465 0.92080 0.93393 1.68657 1.08345 1.26368 1.27869 1.19938 0.94581 0.85864 0.84675 1.19439 0.88745 1.20560 1.12784 0.88672 1.26202 1.01804 0.94206 0.94428 1.70105 1.37752 1.14372 1.09669 0.86141 0.80638 0.79532 0.79222 1.18566 1.19927 1.18563 1.69372 1.06145 1.22384 1.24455 1.23039 0.91285 0.91715 0.93085 1.19871 0.90838 0.96322 1.01079 1.20858 1.00499 0.93103 1.02496 1.20525 0.91433 0.85938 1.07775 1.98307 1.76464 1.33567 1.97015 0.91406 0.91346 0.91690 0.85907 0.85815 0.85311 0.90932 0.85377 0.91097 0.91833 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.61 36.01 0.35 -0.84 16 2 C -0.10 -1.44 5.89 -104.46 -0.62 -2.05 16 3 C -0.11 -1.51 9.68 -39.64 -0.38 -1.89 16 4 C -0.12 -1.85 9.56 -39.17 -0.37 -2.22 16 5 C 0.03 0.60 5.52 -104.87 -0.58 0.02 16 6 C -0.33 -7.00 4.75 -104.27 -0.50 -7.50 16 7 C 0.19 4.18 10.85 -16.83 -0.18 4.00 16 8 N -0.59 -15.20 10.34 -12.41 -0.13 -15.33 16 9 C 0.38 10.40 7.35 -158.17 -1.16 9.24 16 10 C -0.38 -10.05 9.35 -37.79 -0.35 -10.40 16 11 H 0.10 2.39 7.85 -52.49 -0.41 1.98 16 12 C 0.06 1.50 5.50 -17.33 -0.10 1.41 16 13 N -0.70 -17.57 11.40 55.56 0.63 -16.93 16 14 Si 0.92 17.67 29.56 -169.99 -5.02 12.65 16 15 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 16 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 17 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 18 N -0.51 -13.46 7.83 -12.41 -0.10 -13.56 16 19 C 0.19 4.26 9.24 -16.83 -0.16 4.11 16 20 C -0.08 -1.35 5.89 -104.17 -0.61 -1.96 16 21 C -0.11 -1.84 8.08 36.01 0.29 -1.55 16 22 C -0.03 -0.46 6.30 -39.55 -0.25 -0.71 16 23 Cl -0.08 -1.11 25.61 -51.86 -1.33 -2.44 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.72 6.89 -51.93 -0.36 0.36 16 26 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 28 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 30 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 31 H 0.13 2.68 6.97 -52.49 -0.37 2.32 16 32 H 0.07 1.11 7.55 -51.93 -0.39 0.72 16 33 H 0.06 0.94 6.91 -51.93 -0.36 0.58 16 34 H 0.08 1.41 6.48 -51.93 -0.34 1.07 16 LS Contribution 304.96 15.07 4.60 4.60 Total: -1.00 -27.97 304.96 -9.44 -37.41 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.47 Total: 3.95 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -4.62 Total: -10.34 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.41 Total: -45.82 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.02 Total: 12.65 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.33 Total: -2.44 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.97 -9.44 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245826868.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.050 kcal (2) G-P(sol) polarization free energy of solvation -27.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds