Wall clock time and date at job start Tue Mar 31 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38402 * 119.86007 * 2 1 4 4 C 1.37910 * 120.16661 * 179.97438 * 3 2 1 5 5 C 1.39674 * 119.87082 * 0.02562 * 4 3 2 6 6 C 1.47941 * 120.14149 * 180.02562 * 5 4 3 7 7 C 1.40429 * 120.78655 * 309.99929 * 6 5 4 8 8 N 1.31594 * 119.08896 * 179.97438 * 7 6 5 9 9 C 1.33641 * 120.83208 * 0.02562 * 8 7 6 10 10 C 1.41090 * 119.13073 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00441 * 359.97438 * 10 9 8 12 12 C 1.40145 * 120.00046 * 180.02562 * 10 9 8 13 13 N 1.30665 * 119.99878 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00518 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47108 * 59.99215 * 14 12 10 16 16 H 1.48491 * 109.47375 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46676 * 299.99769 * 14 12 10 18 18 N 1.33645 * 121.73257 * 359.97216 * 9 8 7 19 19 C 1.31589 * 120.83266 * 0.02608 * 18 9 8 20 20 C 1.39616 * 119.72022 * 0.27584 * 5 4 3 21 21 C 1.50700 * 120.08122 * 179.72594 * 20 5 4 22 22 C 1.38059 * 119.83618 * 359.40443 * 20 5 4 23 23 Cl 1.73595 * 119.94093 * 180.29664 * 22 20 5 24 24 H 1.08997 * 109.47308 * 89.99414 * 1 2 3 25 25 H 1.08994 * 109.47306 * 209.99820 * 1 2 3 26 26 H 1.09002 * 109.46566 * 329.99771 * 1 2 3 27 27 H 1.08001 * 119.92022 * 0.02562 * 3 2 1 28 28 H 1.07995 * 120.06426 * 180.02562 * 4 3 2 29 29 H 1.07993 * 120.45733 * 0.25688 * 7 6 5 30 30 H 0.96995 * 120.00464 * 180.02562 * 13 12 10 31 31 H 1.07999 * 120.45166 * 179.97438 * 19 18 9 32 32 H 1.08998 * 109.47344 * 90.00417 * 21 20 5 33 33 H 1.09005 * 109.46918 * 209.99773 * 21 20 5 34 34 H 1.09001 * 109.47430 * 329.99740 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2003 0.0000 4 6 3.5752 1.2077 0.0005 5 6 4.2773 0.0002 0.0005 6 6 5.7567 0.0011 0.0017 7 6 6.4757 0.7775 -0.9216 8 7 7.7910 0.7536 -0.8904 9 6 8.4415 0.0033 0.0040 10 6 9.8524 0.0042 0.0050 11 1 10.3926 0.6058 -0.7110 12 6 10.5530 -0.7763 0.9346 13 7 9.8995 -1.5045 1.8007 14 14 12.4209 -0.7746 0.9365 15 1 12.9144 0.6044 1.1815 16 1 12.9157 -1.6756 2.0081 17 1 12.9176 -1.2516 -0.3791 18 7 7.7906 -0.7479 0.8975 19 6 6.4753 -0.7742 0.9260 20 6 3.5771 -1.2076 -0.0058 21 6 4.3264 -2.5151 -0.0121 22 6 2.1965 -1.2013 0.0003 23 17 1.3231 -2.7015 0.0002 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.6525 2.1335 0.0004 28 1 4.1112 2.1452 0.0010 29 1 5.9563 1.3892 -1.6443 30 1 10.3843 -2.0444 2.4443 31 1 5.9556 -1.3837 1.6505 32 1 4.5066 -2.8356 1.0140 33 1 3.7350 -3.2703 -0.5300 34 1 5.2794 -2.3853 -0.5250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245826868.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:27 Heat of formation + Delta-G solvation = 31.948886 kcal Electronic energy + Delta-G solvation = -19472.894584 eV Core-core repulsion = 16395.197147 eV Total energy + Delta-G solvation = -3077.697437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18888 -40.05931 -37.39358 -35.93077 -34.93070 -33.76845 -32.94386 -31.64449 -28.99432 -28.15591 -26.53071 -24.70994 -23.65678 -22.77468 -21.32333 -19.82547 -18.04530 -17.59756 -17.07675 -16.67346 -16.21245 -15.85547 -15.30618 -14.87093 -14.80119 -14.52939 -14.17504 -14.12684 -13.89587 -13.49957 -13.12709 -13.09962 -12.93817 -12.91353 -12.69468 -12.42874 -12.28343 -12.11087 -11.98860 -11.63356 -11.34313 -11.12131 -10.98393 -10.15824 -9.54853 -9.41175 -8.99444 -8.47409 -6.76011 0.07017 0.31177 0.83410 1.05071 1.22147 1.39720 1.53033 1.53814 2.18000 2.62515 2.78832 3.80730 3.83565 3.88902 3.95722 3.98310 4.08539 4.18795 4.36966 4.42138 4.59726 4.66530 4.69724 4.84259 4.85810 4.90844 4.97788 5.08150 5.19652 5.30144 5.34460 5.35878 5.51580 5.74085 5.77521 5.97480 6.09733 6.46864 6.55920 7.13192 8.16384 8.30445 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033192 B = 0.003835 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.364211 B = 7299.181547 C = 7891.485225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.104 4.104 4 C -0.116 4.116 5 C 0.000 4.000 6 C -0.306 4.306 7 C 0.175 3.825 8 N -0.619 5.619 9 C 0.356 3.644 10 C -0.425 4.425 11 H 0.092 0.908 12 C 0.023 3.977 13 N -0.737 5.737 14 Si 1.000 3.000 15 H -0.257 1.257 16 H -0.261 1.261 17 H -0.258 1.258 18 N -0.539 5.539 19 C 0.170 3.830 20 C -0.088 4.088 21 C -0.107 4.107 22 C -0.043 4.043 23 Cl -0.067 7.067 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.160 0.840 28 H 0.131 0.869 29 H 0.160 0.840 30 H 0.287 0.713 31 H 0.142 0.858 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.384 0.610 -0.916 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.122 4.122 4 C -0.134 4.134 5 C -0.002 4.002 6 C -0.316 4.316 7 C 0.003 3.997 8 N -0.339 5.339 9 C 0.122 3.878 10 C -0.459 4.459 11 H 0.110 0.890 12 C -0.201 4.201 13 N -0.358 5.358 14 Si 0.819 3.181 15 H -0.181 1.181 16 H -0.185 1.185 17 H -0.182 1.182 18 N -0.255 5.255 19 C -0.004 4.004 20 C -0.089 4.089 21 C -0.164 4.164 22 C -0.069 4.069 23 Cl -0.038 7.038 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.177 0.823 28 H 0.149 0.851 29 H 0.177 0.823 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.301 0.299 -0.716 13.324 hybrid contribution -0.118 -0.296 0.058 0.324 sum -13.420 0.002 -0.658 13.436 Atomic orbital electron populations 1.20865 0.88442 1.04025 1.03471 1.20078 0.97939 0.90779 1.00596 1.21153 0.93148 0.98008 0.99921 1.21510 0.94711 0.97206 0.99995 1.18394 0.90732 0.92474 0.98581 1.19812 0.93098 1.11701 1.06939 1.23169 0.89789 0.92643 0.94140 1.68662 1.09999 1.27064 1.28146 1.20313 0.95460 0.86616 0.85436 1.19736 0.89054 1.22593 1.14513 0.88966 1.27114 1.06791 0.92997 0.93241 1.70169 1.39967 1.15221 1.10490 0.84992 0.73823 0.79779 0.79528 1.18097 1.18520 1.18164 1.69318 1.07708 1.23348 1.25167 1.23356 0.90760 0.92384 0.93941 1.19879 0.91854 0.95754 1.01431 1.20772 0.99345 0.93820 1.02418 1.20645 0.90973 0.87360 1.07942 1.98312 1.75852 1.32738 1.96941 0.89964 0.91238 0.89391 0.82268 0.85135 0.82262 0.90185 0.84103 0.90905 0.90445 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.61 71.24 0.68 -1.18 16 2 C -0.09 -2.20 5.89 -19.76 -0.12 -2.32 16 3 C -0.10 -2.42 9.68 22.23 0.22 -2.20 16 4 C -0.12 -3.36 9.56 22.54 0.22 -3.14 16 5 C 0.00 0.00 5.52 -20.03 -0.11 -0.11 16 6 C -0.31 -13.07 4.75 -19.64 -0.09 -13.17 16 7 C 0.18 7.88 10.85 85.26 0.93 8.80 16 8 N -0.62 -32.92 10.34 -193.17 -2.00 -34.91 16 9 C 0.36 20.35 7.35 134.91 0.99 21.35 16 10 C -0.42 -23.47 9.35 23.43 0.22 -23.25 16 11 H 0.09 4.89 7.85 -2.91 -0.02 4.87 16 12 C 0.02 1.16 5.50 85.33 0.47 1.63 16 13 N -0.74 -38.48 11.40 21.86 0.25 -38.23 16 14 Si 1.00 36.94 29.56 68.60 2.03 38.97 16 15 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 16 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 17 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 18 N -0.54 -29.93 7.83 -193.17 -1.51 -31.44 16 19 C 0.17 8.11 9.24 85.26 0.79 8.90 16 20 C -0.09 -2.87 5.89 -19.57 -0.12 -2.99 16 21 C -0.11 -3.49 8.08 71.24 0.58 -2.92 16 22 C -0.04 -1.19 6.30 22.29 0.14 -1.05 16 23 Cl -0.07 -1.65 25.61 -2.72 -0.07 -1.72 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.18 6.89 -2.39 -0.02 1.17 16 26 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 27 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 29 H 0.16 5.97 8.06 -2.91 -0.02 5.95 16 30 H 0.29 13.34 8.29 -92.71 -0.77 12.57 16 31 H 0.14 6.12 6.97 -2.91 -0.02 6.10 16 32 H 0.07 2.30 7.55 -2.39 -0.02 2.28 16 33 H 0.08 2.24 6.91 -2.38 -0.02 2.23 16 34 H 0.05 1.84 6.48 -2.39 -0.02 1.83 16 Total: -1.00 -63.52 304.96 4.62 -58.90 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.13 Total: 20.07 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.79 Total: -11.64 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.26 Total: -104.58 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -63.52 4.62 -58.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245826868.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.850 kcal (2) G-P(sol) polarization free energy of solvation -63.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds