Wall clock time and date at job start Tue Mar 31 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30525 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48493 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47184 * 300.00501 * 3 2 1 6 6 H 1.48505 * 109.46762 * 60.00054 * 3 2 1 7 7 C 1.40432 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99637 * 179.97438 * 7 2 1 9 9 C 1.40365 * 119.99962 * 359.97438 * 7 2 1 10 10 N 1.33190 * 126.67623 * 180.02562 * 9 7 2 11 11 C 1.34314 * 105.48169 * 180.02562 * 10 9 7 12 12 C 1.48367 * 126.21174 * 179.97438 * 11 10 9 13 13 C 1.39379 * 120.06536 * 180.02562 * 12 11 10 14 14 C 1.37878 * 119.94005 * 179.97438 * 13 12 11 15 15 C 1.38872 * 120.05982 * 0.02562 * 14 13 12 16 16 O 1.35828 * 119.93543 * 179.97438 * 15 14 13 17 17 C 1.42901 * 117.00138 * 354.03663 * 16 15 14 18 18 C 1.53362 * 114.56578 * 201.40851 * 17 16 15 19 19 O 1.43349 * 88.49602 * 220.44952 * 18 17 16 20 20 C 1.43352 * 88.32244 * 28.12701 * 19 18 17 21 21 C 1.38863 * 120.12378 * 0.27226 * 15 14 13 22 22 C 1.37881 * 120.06246 * 359.44650 * 21 15 14 23 23 N 1.31309 * 107.58010 * 0.26598 * 11 10 9 24 24 O 1.21268 * 110.52623 * 359.53510 * 23 11 10 25 25 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.03333 * 0.02562 * 13 12 11 27 27 H 1.07992 * 119.97054 * 179.97438 * 14 13 12 28 28 H 1.08997 * 113.56501 * 335.68797 * 17 16 15 29 29 H 1.08998 * 113.39037 * 105.52656 * 18 17 16 30 30 H 1.08998 * 113.39571 * 335.36441 * 18 17 16 31 31 H 1.08995 * 113.38659 * 86.74913 * 20 19 18 32 32 H 1.09002 * 113.39246 * 216.90391 * 20 19 18 33 33 H 1.08005 * 119.96891 * 179.70411 * 21 15 14 34 34 H 1.07996 * 120.03250 * 180.27595 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6992 1.3464 0.0006 5 1 1.8805 2.3965 -1.2124 6 1 1.8805 2.3964 1.2126 7 6 2.0074 -1.2162 -0.0005 8 1 3.0873 -1.2162 -0.0010 9 6 1.3055 -2.4318 -0.0005 10 7 1.8328 -3.6549 -0.0005 11 6 0.7861 -4.4965 -0.0011 12 6 0.8532 -5.9787 -0.0019 13 6 -0.3203 -6.7308 -0.0030 14 6 -0.2549 -8.1080 -0.0042 15 6 0.9787 -8.7459 -0.0039 16 8 1.0401 -10.1028 -0.0046 17 6 -0.1957 -10.8082 0.1266 18 6 -0.0563 -12.2502 0.6300 19 8 -1.0645 -12.6368 -0.3129 20 6 -0.6488 -11.5436 -1.1418 21 6 2.1494 -7.9991 0.0035 22 6 2.0900 -6.6216 -0.0011 23 7 -0.3074 -3.7696 -0.0073 24 8 -0.0328 -2.5884 -0.0012 25 1 -0.4850 0.8401 0.0004 26 1 -1.2798 -6.2353 -0.0037 27 1 -1.1638 -8.6912 -0.0047 28 1 -0.9775 -10.2299 0.6189 29 1 -0.3631 -12.3776 1.6682 30 1 0.9201 -12.6883 0.4234 31 1 0.1732 -11.7966 -1.8114 32 1 -1.4745 -11.0525 -1.6567 33 1 3.1074 -8.4978 0.0086 34 1 3.0008 -6.0413 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247386261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:19 Heat of formation + Delta-G solvation = 33.945589 kcal Electronic energy + Delta-G solvation = -21175.514035 eV Core-core repulsion = 17657.194017 eV Total energy + Delta-G solvation = -3518.320018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.05454 -41.36741 -39.48913 -37.12650 -34.17685 -33.63472 -31.30979 -30.72275 -29.81678 -28.57393 -26.67878 -26.54275 -23.43450 -23.08928 -21.69340 -20.72451 -20.40790 -18.69828 -18.07246 -16.94492 -16.56355 -16.10915 -15.86790 -15.55995 -15.31824 -14.95359 -14.60016 -14.32051 -13.92492 -13.40280 -13.20300 -12.99668 -12.61572 -12.37294 -12.13108 -11.95003 -11.69173 -11.52235 -11.41446 -10.93938 -10.70479 -10.51741 -10.20705 -10.15964 -10.05346 -9.79402 -9.02778 -8.84463 -8.64349 -7.61592 -7.13847 -5.08441 1.35537 1.55133 2.74174 2.93692 2.96246 3.01389 3.22433 3.48472 3.61625 3.70018 3.77610 4.36731 4.37221 4.79840 4.83530 4.91908 4.92366 4.99170 4.99367 5.12300 5.20799 5.30919 5.42681 5.51047 5.57011 5.64507 5.83147 6.07647 6.30138 6.37917 6.42254 6.79756 6.86195 6.99378 7.26694 7.39858 7.83194 8.02749 8.24312 8.39794 9.85248 10.26115 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.060577 B = 0.002738 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.109575 B =10223.432889 C =10577.481261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.070 3.930 3 Si 0.937 3.063 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.115 0.885 9 C 0.304 3.696 10 N -0.606 5.606 11 C 0.192 3.808 12 C -0.014 4.014 13 C -0.056 4.056 14 C -0.210 4.210 15 C 0.116 3.884 16 O -0.298 6.298 17 C 0.011 3.989 18 C 0.036 3.964 19 O -0.359 6.359 20 C 0.013 3.987 21 C -0.152 4.152 22 C -0.046 4.046 23 N -0.458 5.458 24 O 0.052 5.948 25 H 0.292 0.708 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 -14.200 0.202 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.155 4.155 3 Si 0.759 3.241 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.452 4.452 8 H 0.132 0.868 9 C 0.114 3.886 10 N -0.350 5.350 11 C -0.079 4.079 12 C -0.016 4.016 13 C -0.076 4.076 14 C -0.229 4.229 15 C 0.071 3.929 16 O -0.212 6.212 17 C -0.046 4.046 18 C -0.041 4.041 19 O -0.278 6.278 20 C -0.064 4.064 21 C -0.170 4.170 22 C -0.066 4.066 23 N -0.186 5.186 24 O 0.002 5.998 25 H 0.104 0.896 26 H 0.150 0.850 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.150 0.850 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.281 -14.976 0.159 14.980 hybrid contribution 0.118 1.145 0.000 1.151 sum -0.162 -13.831 0.159 13.833 Atomic orbital electron populations 1.69643 1.07794 1.30840 1.30734 1.26212 0.95141 1.02369 0.91799 0.85771 0.80589 0.78766 0.78927 1.17800 1.19318 1.19323 1.18633 0.95096 0.85388 1.46054 0.86760 1.24176 0.79794 0.93935 0.90735 1.72353 1.27678 0.98419 1.36546 1.23221 0.86879 0.94733 1.03058 1.17535 0.93355 0.87750 1.02921 1.21002 0.98498 0.92449 0.95673 1.21043 0.96349 0.95272 1.10225 1.19029 0.94305 0.81607 0.97922 1.86101 1.31225 1.16298 1.87594 1.25562 0.87775 0.93210 0.98098 1.23979 0.93560 0.90635 0.95888 1.89931 1.51857 1.51139 1.34848 1.24375 1.00659 0.86204 0.95182 1.20324 0.96484 0.92893 1.07311 1.21108 0.98075 0.92712 0.94718 1.74579 1.23946 0.91030 1.29059 1.85512 1.25802 1.17717 1.70742 0.89643 0.84993 0.85467 0.86239 0.88461 0.88945 0.88990 0.88747 0.85011 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.07 12.05 55.57 0.67 -18.40 16 2 C 0.07 1.66 5.50 -17.28 -0.10 1.56 16 3 Si 0.94 17.20 29.56 -169.99 -5.03 12.17 16 4 H -0.25 -4.58 7.11 56.52 0.40 -4.17 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.41 -10.71 9.48 -37.96 -0.36 -11.07 16 8 H 0.11 2.78 7.85 -52.49 -0.41 2.37 16 9 C 0.30 8.53 7.80 -16.33 -0.13 8.41 16 10 N -0.61 -16.40 11.29 -11.62 -0.13 -16.53 16 11 C 0.19 4.87 7.78 -156.50 -1.22 3.66 16 12 C -0.01 -0.28 5.88 -104.87 -0.62 -0.90 16 13 C -0.06 -0.99 9.68 -39.29 -0.38 -1.37 16 14 C -0.21 -3.00 9.01 -39.48 -0.36 -3.35 16 15 C 0.12 1.64 6.68 -39.12 -0.26 1.38 16 16 O -0.30 -3.61 10.21 -19.20 -0.20 -3.81 16 17 C 0.01 0.10 4.20 -26.31 -0.11 -0.01 16 18 C 0.04 0.30 8.59 24.60 0.21 0.51 16 19 O -0.36 -3.71 12.74 -35.23 -0.45 -4.16 16 20 C 0.01 0.11 8.60 24.65 0.21 0.33 16 21 C -0.15 -2.24 9.97 -39.48 -0.39 -2.63 16 22 C -0.05 -0.82 9.69 -39.28 -0.38 -1.20 16 23 N -0.46 -12.42 11.83 31.47 0.37 -12.05 16 24 O 0.05 1.50 9.72 15.16 0.15 1.64 16 25 H 0.29 6.43 8.29 -40.82 -0.34 6.09 16 26 H 0.13 2.34 7.85 -52.49 -0.41 1.93 16 27 H 0.13 1.44 5.89 -52.49 -0.31 1.13 16 28 H 0.12 1.06 5.95 -51.93 -0.31 0.75 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.14 2.55 7.86 -52.49 -0.41 2.14 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -30.49 305.91 -6.98 -37.47 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.10 Total: 3.76 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -3.87 Total: -4.70 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.91 Total: -46.98 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.50 Total: -6.32 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.49 -6.98 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.411 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds