Wall clock time and date at job start Tue Mar 31 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30525 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48493 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47184 * 300.00501 * 3 2 1 6 6 H 1.48505 * 109.46762 * 60.00054 * 3 2 1 7 7 C 1.40432 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99637 * 179.97438 * 7 2 1 9 9 C 1.40365 * 119.99962 * 359.97438 * 7 2 1 10 10 N 1.33190 * 126.67623 * 180.02562 * 9 7 2 11 11 C 1.34314 * 105.48169 * 180.02562 * 10 9 7 12 12 C 1.48367 * 126.21174 * 179.97438 * 11 10 9 13 13 C 1.39379 * 120.06536 * 180.02562 * 12 11 10 14 14 C 1.37878 * 119.94005 * 179.97438 * 13 12 11 15 15 C 1.38872 * 120.05982 * 0.02562 * 14 13 12 16 16 O 1.35828 * 119.93543 * 179.97438 * 15 14 13 17 17 C 1.42901 * 117.00138 * 354.03663 * 16 15 14 18 18 C 1.53362 * 114.56578 * 201.40851 * 17 16 15 19 19 O 1.43349 * 88.49602 * 220.44952 * 18 17 16 20 20 C 1.43352 * 88.32244 * 28.12701 * 19 18 17 21 21 C 1.38863 * 120.12378 * 0.27226 * 15 14 13 22 22 C 1.37881 * 120.06246 * 359.44650 * 21 15 14 23 23 N 1.31309 * 107.58010 * 0.26598 * 11 10 9 24 24 O 1.21268 * 110.52623 * 359.53510 * 23 11 10 25 25 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.03333 * 0.02562 * 13 12 11 27 27 H 1.07992 * 119.97054 * 179.97438 * 14 13 12 28 28 H 1.08997 * 113.56501 * 335.68797 * 17 16 15 29 29 H 1.08998 * 113.39037 * 105.52656 * 18 17 16 30 30 H 1.08998 * 113.39571 * 335.36441 * 18 17 16 31 31 H 1.08995 * 113.38659 * 86.74913 * 20 19 18 32 32 H 1.09002 * 113.39246 * 216.90391 * 20 19 18 33 33 H 1.08005 * 119.96891 * 179.70411 * 21 15 14 34 34 H 1.07996 * 120.03250 * 180.27595 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6992 1.3464 0.0006 5 1 1.8805 2.3965 -1.2124 6 1 1.8805 2.3964 1.2126 7 6 2.0074 -1.2162 -0.0005 8 1 3.0873 -1.2162 -0.0010 9 6 1.3055 -2.4318 -0.0005 10 7 1.8328 -3.6549 -0.0005 11 6 0.7861 -4.4965 -0.0011 12 6 0.8532 -5.9787 -0.0019 13 6 -0.3203 -6.7308 -0.0030 14 6 -0.2549 -8.1080 -0.0042 15 6 0.9787 -8.7459 -0.0039 16 8 1.0401 -10.1028 -0.0046 17 6 -0.1957 -10.8082 0.1266 18 6 -0.0563 -12.2502 0.6300 19 8 -1.0645 -12.6368 -0.3129 20 6 -0.6488 -11.5436 -1.1418 21 6 2.1494 -7.9991 0.0035 22 6 2.0900 -6.6216 -0.0011 23 7 -0.3074 -3.7696 -0.0073 24 8 -0.0328 -2.5884 -0.0012 25 1 -0.4850 0.8401 0.0004 26 1 -1.2798 -6.2353 -0.0037 27 1 -1.1638 -8.6912 -0.0047 28 1 -0.9775 -10.2299 0.6189 29 1 -0.3631 -12.3776 1.6682 30 1 0.9201 -12.6883 0.4234 31 1 0.1732 -11.7966 -1.8114 32 1 -1.4745 -11.0525 -1.6567 33 1 3.1074 -8.4978 0.0086 34 1 3.0008 -6.0413 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247386261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:18 Heat of formation + Delta-G solvation = 12.173766 kcal Electronic energy + Delta-G solvation = -21176.458132 eV Core-core repulsion = 17657.194017 eV Total energy + Delta-G solvation = -3519.264115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.02708 -42.16434 -40.59414 -38.29823 -36.09781 -35.50965 -32.92068 -32.14500 -31.00511 -29.76370 -28.50442 -27.32069 -24.89580 -24.42823 -23.37793 -22.35327 -21.47451 -19.93534 -19.64226 -17.90412 -17.84946 -17.46796 -17.34843 -17.02368 -16.71678 -16.41364 -15.69885 -15.54633 -15.24877 -14.97271 -14.47359 -13.86763 -13.76641 -13.62348 -13.51381 -13.40777 -13.09734 -13.05023 -12.84999 -12.24067 -12.11208 -11.94291 -11.91507 -11.67765 -11.33377 -11.04892 -10.88277 -10.49280 -10.10281 -9.06365 -8.97104 -7.11707 -0.04429 0.28764 1.01781 1.41317 1.58772 1.63214 1.96973 2.03964 2.15360 2.77424 2.81699 3.00998 3.07258 3.11904 3.37052 3.61779 3.72394 3.90553 4.04765 4.14931 4.26194 4.30918 4.42116 4.53623 4.63353 4.67172 4.83924 4.86206 4.92638 4.95594 5.00678 5.15206 5.46464 5.57932 5.61180 5.86067 6.04077 6.25355 6.29275 6.42890 8.04956 8.24181 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.060577 B = 0.002738 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.109575 B =10223.432889 C =10577.481261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.028 3.972 3 Si 1.023 2.977 4 H -0.247 1.247 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.430 4.430 8 H 0.124 0.876 9 C 0.271 3.729 10 N -0.630 5.630 11 C 0.201 3.799 12 C -0.062 4.062 13 C -0.058 4.058 14 C -0.199 4.199 15 C 0.137 3.863 16 O -0.295 6.295 17 C 0.000 4.000 18 C 0.040 3.960 19 O -0.378 6.378 20 C 0.013 3.987 21 C -0.145 4.145 22 C -0.048 4.048 23 N -0.488 5.488 24 O 0.016 5.984 25 H 0.306 0.694 26 H 0.123 0.877 27 H 0.162 0.838 28 H 0.130 0.870 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.161 0.839 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 -15.365 0.291 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.194 4.194 3 Si 0.840 3.160 4 H -0.169 1.169 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.142 0.858 9 C 0.082 3.918 10 N -0.374 5.374 11 C -0.070 4.070 12 C -0.064 4.064 13 C -0.078 4.078 14 C -0.217 4.217 15 C 0.091 3.909 16 O -0.208 6.208 17 C -0.057 4.057 18 C -0.037 4.037 19 O -0.297 6.297 20 C -0.064 4.064 21 C -0.163 4.163 22 C -0.068 4.068 23 N -0.222 5.222 24 O -0.027 6.027 25 H 0.118 0.882 26 H 0.141 0.859 27 H 0.180 0.820 28 H 0.147 0.853 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.179 0.821 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.443 -16.137 0.248 16.145 hybrid contribution -0.134 1.281 -0.028 1.288 sum 0.309 -14.856 0.220 14.861 Atomic orbital electron populations 1.69702 1.09777 1.32972 1.29780 1.27417 0.95930 1.05875 0.90219 0.84547 0.79081 0.72824 0.79593 1.16948 1.18096 1.18096 1.19186 0.95795 0.85945 1.45832 0.85845 1.24813 0.80120 0.95146 0.91675 1.72327 1.28464 0.98564 1.38081 1.24039 0.85942 0.96886 1.00136 1.17698 0.95654 0.85412 1.07629 1.20986 0.97156 0.93807 0.95847 1.21281 0.98056 0.93813 1.08524 1.19070 0.93821 0.82700 0.95274 1.86129 1.32910 1.14813 1.86939 1.25867 0.87010 0.93658 0.99140 1.24107 0.93749 0.89268 0.96554 1.89935 1.52588 1.51572 1.35644 1.24459 1.01280 0.85709 0.94932 1.20510 0.98250 0.91543 1.06036 1.21040 0.96641 0.94053 0.95048 1.74492 1.24748 0.90777 1.32159 1.85439 1.26104 1.18631 1.72524 0.88212 0.85906 0.82049 0.85259 0.86710 0.87975 0.88393 0.87711 0.82140 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.57 12.05 21.91 0.26 -40.30 16 2 C 0.03 1.31 5.50 85.42 0.47 1.78 16 3 Si 1.02 34.35 29.56 68.60 2.03 36.38 16 4 H -0.25 -7.91 7.11 99.48 0.71 -7.20 16 5 H -0.26 -8.14 7.11 99.48 0.71 -7.43 16 6 H -0.26 -8.13 7.11 99.48 0.71 -7.43 16 7 C -0.43 -22.96 9.48 23.32 0.22 -22.74 16 8 H 0.12 6.13 7.85 -2.91 -0.02 6.11 16 9 C 0.27 16.01 7.80 85.06 0.66 16.68 16 10 N -0.63 -35.91 11.29 -305.05 -3.44 -39.35 16 11 C 0.20 10.79 7.78 137.41 1.07 11.86 16 12 C -0.06 -2.62 5.88 -20.03 -0.12 -2.74 16 13 C -0.06 -2.04 9.68 22.46 0.22 -1.82 16 14 C -0.20 -5.20 9.01 22.34 0.20 -5.00 16 15 C 0.14 3.47 6.68 22.57 0.15 3.62 16 16 O -0.29 -6.03 10.21 -91.62 -0.94 -6.97 16 17 C 0.00 0.00 4.20 30.87 0.13 0.13 16 18 C 0.04 0.52 8.59 63.85 0.55 1.07 16 19 O -0.38 -6.74 12.74 -148.98 -1.90 -8.64 16 20 C 0.01 0.19 8.60 63.88 0.55 0.74 16 21 C -0.15 -3.99 9.97 22.33 0.22 -3.77 16 22 C -0.05 -1.71 9.69 22.46 0.22 -1.49 16 23 N -0.49 -28.06 11.83 -56.02 -0.66 -28.73 16 24 O 0.02 1.00 9.72 64.33 0.63 1.63 16 25 H 0.31 13.54 8.29 -92.71 -0.77 12.77 16 26 H 0.12 4.49 7.85 -2.91 -0.02 4.47 16 27 H 0.16 3.07 5.89 -2.91 -0.02 3.05 16 28 H 0.13 1.78 5.95 -2.39 -0.01 1.76 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.13 4.89 7.86 -2.91 -0.02 4.87 16 Total: -1.00 -70.09 305.91 1.67 -68.42 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.15 Total: 19.25 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.54 Total: -1.70 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -3.84 Total: -108.38 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -2.21 Total: -13.98 kcal Atomic # 14 Polarization: 34.35 SS G_CDS: 2.03 Total: 36.38 kcal Total: -70.09 1.67 -68.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.592 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds