Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.30965 * 126.43569 * 89.71131 * 10 9 7 12 12 C 1.35238 * 105.58274 * 179.97438 * 11 10 9 13 13 C 1.48342 * 126.42399 * 180.12757 * 12 11 10 14 14 C 1.39381 * 120.07071 * 0.28509 * 13 12 11 15 15 C 1.37892 * 119.99065 * 180.02562 * 14 13 12 16 16 C 1.38870 * 120.23651 * 359.97112 * 15 14 13 17 17 C 1.39136 * 120.00464 * 359.93623 * 16 15 14 18 18 C 1.38446 * 119.93420 * 359.88000 * 17 16 15 19 19 O 1.36134 * 120.77086 * 180.20939 * 17 16 15 20 20 C 1.43173 * 116.70478 * 342.74727 * 19 17 16 21 21 C 1.53474 * 108.22537 * 46.24700 * 20 19 17 22 22 O 1.36078 * 119.26470 * 179.80293 * 16 15 14 23 23 N 1.30810 * 107.15814 * 0.34367 * 12 11 10 24 24 O 1.21291 * 110.09070 * 359.78569 * 23 12 11 25 25 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 26 26 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 27 27 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 28 28 H 1.08002 * 120.00396 * 0.02562 * 14 13 12 29 29 H 1.08005 * 119.88244 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.01132 * 180.14933 * 18 17 16 31 31 H 1.09007 * 109.71147 * 286.56456 * 20 19 17 32 32 H 1.08998 * 109.75208 * 165.94787 * 20 19 17 33 33 H 1.08997 * 109.70458 * 180.52282 * 21 20 19 34 34 H 1.08996 * 109.73903 * 59.91502 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.7437 -4.2348 1.0383 12 6 3.5608 -5.1963 0.5517 13 6 4.3756 -6.1459 1.3484 14 6 4.3379 -6.1009 2.7410 15 6 5.0964 -6.9841 3.4799 16 6 5.8990 -7.9206 2.8417 17 6 5.9389 -7.9711 1.4519 18 6 5.1759 -7.0886 0.7064 19 8 6.7169 -8.8855 0.8101 20 6 7.7482 -9.5086 1.5834 21 6 7.1449 -9.9442 2.9257 22 8 6.6425 -8.7800 3.5903 23 7 3.5015 -5.1289 -0.7534 24 8 2.7432 -4.2445 -1.0909 25 1 -0.4849 0.8401 0.0041 26 1 0.6280 -2.5591 0.8866 27 1 0.6206 -2.5548 -0.8933 28 1 3.7147 -5.3744 3.2411 29 1 5.0662 -6.9474 4.5589 30 1 5.2040 -7.1282 -0.3726 31 1 8.5572 -8.7989 1.7570 32 1 8.1312 -10.3800 1.0525 33 1 7.9137 -10.4144 3.5388 34 1 6.3312 -10.6483 2.7524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247444098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = 15.634636 kcal Electronic energy + Delta-G solvation = -21406.230457 eV Core-core repulsion = 17887.116417 eV Total energy + Delta-G solvation = -3519.114040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.75616 -41.42736 -38.07659 -37.48154 -35.09901 -33.84852 -32.23538 -31.30307 -30.62083 -28.72107 -28.38337 -25.31052 -24.12425 -23.57797 -22.84809 -21.29289 -20.37711 -18.81070 -17.71761 -17.51193 -17.38978 -16.45780 -16.22276 -15.66376 -15.36730 -14.94998 -14.71174 -14.64376 -14.16883 -13.99647 -13.41328 -13.23559 -12.73296 -12.48907 -12.17679 -12.04770 -11.86944 -11.40528 -11.35643 -11.08796 -10.78293 -10.77618 -10.71362 -10.35934 -10.14834 -9.94166 -9.15397 -8.70694 -8.61706 -8.05970 -6.25598 -4.31466 0.77727 1.19280 2.03798 2.70298 2.92020 2.96627 3.26414 3.30152 3.34136 3.71946 3.76567 3.90439 4.04378 4.32025 4.39309 4.47066 4.56036 4.62520 4.90991 5.09969 5.11282 5.14163 5.18146 5.37160 5.65261 5.69024 5.96732 6.02219 6.40691 6.40975 6.53192 6.65263 6.67609 7.10691 7.17033 7.17864 7.67683 7.90683 8.68635 8.86647 9.33527 10.84737 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.034211 B = 0.003093 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.255214 B = 9049.272251 C = 9276.528632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.101 3.899 10 C 0.243 3.757 11 N -0.498 5.498 12 C 0.197 3.803 13 C 0.001 3.999 14 C -0.070 4.070 15 C -0.116 4.116 16 C 0.059 3.941 17 C 0.045 3.955 18 C -0.081 4.081 19 O -0.306 6.306 20 C 0.020 3.980 21 C 0.020 3.980 22 O -0.306 6.306 23 N -0.398 5.398 24 O 0.067 5.933 25 H 0.269 0.731 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.195 -18.067 5.424 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.062 3.938 10 C 0.025 3.975 11 N -0.231 5.231 12 C -0.073 4.073 13 C -0.001 4.001 14 C -0.089 4.089 15 C -0.134 4.134 16 C 0.014 3.986 17 C 0.000 4.000 18 C -0.102 4.102 19 O -0.220 6.220 20 C -0.055 4.055 21 C -0.056 4.056 22 O -0.220 6.220 23 N -0.109 5.109 24 O 0.010 5.990 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.559 -18.570 5.307 23.037 hybrid contribution 0.550 0.821 -0.065 0.990 sum 13.108 -17.749 5.241 22.679 Atomic orbital electron populations 1.69914 1.06032 1.27759 1.48812 1.24921 0.94992 0.99433 0.94297 0.86409 0.79450 0.81835 0.78986 1.19899 1.20934 1.19912 1.20760 0.93249 0.88830 1.53586 0.92050 1.18240 0.89818 0.84396 1.01341 1.30126 0.94288 0.94497 0.78612 1.72043 1.12984 1.08957 1.29164 1.23663 0.98732 0.97012 0.87894 1.16996 0.97022 0.94231 0.91896 1.21064 0.97826 0.98066 0.91990 1.20358 0.96423 0.95858 1.00776 1.19033 0.96395 0.94486 0.88709 1.18563 0.97449 0.94366 0.89583 1.20339 0.96333 0.92727 1.00760 1.86331 1.44406 1.53437 1.37869 1.23629 0.89552 0.99394 0.92961 1.23639 1.00309 0.86756 0.94864 1.86299 1.65773 1.32793 1.37183 1.74782 1.12430 1.08749 1.14920 1.85249 1.42747 1.34384 1.36625 0.92182 0.91194 0.92234 0.83312 0.84038 0.83962 0.90432 0.86042 0.86060 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.01 9.09 -34.44 -0.31 -14.32 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.10 2.44 5.60 -29.04 -0.16 2.28 16 10 C 0.24 5.47 7.68 -12.99 -0.10 5.37 16 11 N -0.50 -10.90 11.25 -9.87 -0.11 -11.01 16 12 C 0.20 3.96 7.80 -156.10 -1.22 2.75 16 13 C 0.00 0.01 5.87 -104.91 -0.62 -0.61 16 14 C -0.07 -1.02 9.69 -39.28 -0.38 -1.40 16 15 C -0.12 -1.46 9.94 -39.47 -0.39 -1.85 16 16 C 0.06 0.77 6.50 -39.01 -0.25 0.52 16 17 C 0.05 0.62 6.49 -39.17 -0.25 0.37 16 18 C -0.08 -1.25 9.60 -39.10 -0.38 -1.62 16 19 O -0.31 -3.72 10.42 -32.93 -0.34 -4.06 16 20 C 0.02 0.15 7.26 37.40 0.27 0.42 16 21 C 0.02 0.14 7.26 37.40 0.27 0.41 16 22 O -0.31 -3.40 10.41 -32.75 -0.34 -3.74 16 23 N -0.40 -8.27 11.85 30.98 0.37 -7.91 16 24 O 0.07 1.46 11.29 18.03 0.20 1.66 16 25 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 26 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 27 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.15 2.16 7.87 -52.49 -0.41 1.75 16 29 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 30 H 0.14 2.20 7.86 -52.49 -0.41 1.78 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -30.06 306.32 -6.84 -36.90 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -3.33 Total: -2.37 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.62 Total: -6.01 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.99 Total: -42.65 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.48 Total: -6.13 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.06 -6.84 -36.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.537 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds