Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.30965 * 126.43569 * 89.71131 * 10 9 7 12 12 C 1.35238 * 105.58274 * 179.97438 * 11 10 9 13 13 C 1.48342 * 126.42399 * 180.12757 * 12 11 10 14 14 C 1.39381 * 120.07071 * 0.28509 * 13 12 11 15 15 C 1.37892 * 119.99065 * 180.02562 * 14 13 12 16 16 C 1.38870 * 120.23651 * 359.97112 * 15 14 13 17 17 C 1.39136 * 120.00464 * 359.93623 * 16 15 14 18 18 C 1.38446 * 119.93420 * 359.88000 * 17 16 15 19 19 O 1.36134 * 120.77086 * 180.20939 * 17 16 15 20 20 C 1.43173 * 116.70478 * 342.74727 * 19 17 16 21 21 C 1.53474 * 108.22537 * 46.24700 * 20 19 17 22 22 O 1.36078 * 119.26470 * 179.80293 * 16 15 14 23 23 N 1.30810 * 107.15814 * 0.34367 * 12 11 10 24 24 O 1.21291 * 110.09070 * 359.78569 * 23 12 11 25 25 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 26 26 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 27 27 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 28 28 H 1.08002 * 120.00396 * 0.02562 * 14 13 12 29 29 H 1.08005 * 119.88244 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.01132 * 180.14933 * 18 17 16 31 31 H 1.09007 * 109.71147 * 286.56456 * 20 19 17 32 32 H 1.08998 * 109.75208 * 165.94787 * 20 19 17 33 33 H 1.08997 * 109.70458 * 180.52282 * 21 20 19 34 34 H 1.08996 * 109.73903 * 59.91502 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.7437 -4.2348 1.0383 12 6 3.5608 -5.1963 0.5517 13 6 4.3756 -6.1459 1.3484 14 6 4.3379 -6.1009 2.7410 15 6 5.0964 -6.9841 3.4799 16 6 5.8990 -7.9206 2.8417 17 6 5.9389 -7.9711 1.4519 18 6 5.1759 -7.0886 0.7064 19 8 6.7169 -8.8855 0.8101 20 6 7.7482 -9.5086 1.5834 21 6 7.1449 -9.9442 2.9257 22 8 6.6425 -8.7800 3.5903 23 7 3.5015 -5.1289 -0.7534 24 8 2.7432 -4.2445 -1.0909 25 1 -0.4849 0.8401 0.0041 26 1 0.6280 -2.5591 0.8866 27 1 0.6206 -2.5548 -0.8933 28 1 3.7147 -5.3744 3.2411 29 1 5.0662 -6.9474 4.5589 30 1 5.2040 -7.1282 -0.3726 31 1 8.5572 -8.7989 1.7570 32 1 8.1312 -10.3800 1.0525 33 1 7.9137 -10.4144 3.5388 34 1 6.3312 -10.6483 2.7524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247444098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = -3.763956 kcal Electronic energy + Delta-G solvation = -21407.071643 eV Core-core repulsion = 17887.116417 eV Total energy + Delta-G solvation = -3519.955226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.42883 -42.32727 -39.15350 -38.35059 -36.75381 -35.71090 -33.95420 -32.18464 -31.85495 -30.28693 -29.63066 -26.35549 -25.98943 -24.78593 -24.27649 -22.58826 -21.58060 -19.79371 -19.29004 -18.84701 -18.33115 -18.29205 -17.71527 -16.75827 -16.56405 -16.32370 -15.88882 -15.47974 -15.28744 -15.02006 -14.83615 -14.45708 -14.39270 -14.14828 -13.63301 -13.29061 -13.10583 -12.93800 -12.91318 -12.59919 -12.21079 -12.16452 -12.04202 -11.96948 -11.74889 -11.54798 -10.86703 -10.65904 -9.80565 -9.16798 -8.29886 -6.43160 -0.47203 0.12259 0.39525 1.37737 1.46264 1.46750 1.55590 1.89956 1.97089 2.09955 2.40689 2.57207 2.63986 3.00948 3.10662 3.16849 3.57338 3.91640 3.93894 3.99817 4.14866 4.17821 4.32261 4.50296 4.56318 4.64498 4.67074 4.86083 4.92379 4.97011 5.11304 5.23698 5.32797 5.36899 5.59823 5.78065 5.88520 6.26065 6.60898 7.16841 7.25498 8.80726 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.034211 B = 0.003093 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.255214 B = 9049.272251 C = 9276.528632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.110 3.890 10 C 0.236 3.764 11 N -0.507 5.507 12 C 0.206 3.794 13 C -0.031 4.031 14 C -0.070 4.070 15 C -0.109 4.109 16 C 0.071 3.929 17 C 0.045 3.955 18 C -0.088 4.088 19 O -0.322 6.322 20 C 0.011 3.989 21 C 0.013 3.987 22 O -0.311 6.311 23 N -0.407 5.407 24 O 0.058 5.942 25 H 0.273 0.727 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.147 0.853 29 H 0.170 0.830 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.243 -19.350 6.732 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.071 3.929 10 C 0.017 3.983 11 N -0.241 5.241 12 C -0.064 4.064 13 C -0.033 4.033 14 C -0.090 4.090 15 C -0.127 4.127 16 C 0.024 3.976 17 C 0.000 4.000 18 C -0.108 4.108 19 O -0.237 6.237 20 C -0.063 4.063 21 C -0.061 4.061 22 O -0.226 6.226 23 N -0.120 5.120 24 O 0.004 5.996 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.187 0.813 30 H 0.152 0.848 31 H 0.100 0.900 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.608 -19.869 6.599 25.529 hybrid contribution 0.062 0.981 -0.396 1.059 sum 14.671 -18.888 6.203 24.708 Atomic orbital electron populations 1.69996 1.07267 1.28852 1.49182 1.25714 0.95816 1.02602 0.93636 0.85437 0.78349 0.77882 0.79057 1.19375 1.19919 1.19588 1.20993 0.93091 0.90206 1.54117 0.92868 1.17956 0.89873 0.84481 1.00562 1.29754 0.94632 0.94640 0.79261 1.72023 1.13422 1.09505 1.29133 1.24225 0.97844 0.96516 0.87818 1.17080 0.98550 0.95092 0.92604 1.21083 0.98238 0.98559 0.91135 1.20591 0.95352 0.94803 1.01968 1.19131 0.95653 0.94361 0.88421 1.18534 0.97309 0.94231 0.89932 1.20264 0.96841 0.93224 1.00512 1.86314 1.45163 1.52996 1.39215 1.24064 0.88394 1.00476 0.93385 1.24054 1.01493 0.85368 0.95174 1.86302 1.65101 1.33582 1.37577 1.74762 1.12882 1.08913 1.15459 1.85229 1.43136 1.34752 1.36438 0.91774 0.92295 0.92602 0.83571 0.81252 0.84834 0.89962 0.82519 0.82139 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.84 13.29 21.45 0.28 -50.55 16 2 C 0.02 1.25 5.46 84.66 0.46 1.71 16 3 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -29.65 9.09 25.60 0.23 -29.42 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.11 5.52 5.60 29.10 0.16 5.68 16 10 C 0.24 10.98 7.68 88.36 0.68 11.65 16 11 N -0.51 -22.78 11.25 -302.43 -3.40 -26.18 16 12 C 0.21 8.49 7.80 137.25 1.07 9.56 16 13 C -0.03 -1.06 5.87 -20.05 -0.12 -1.18 16 14 C -0.07 -2.02 9.69 22.46 0.22 -1.80 16 15 C -0.11 -2.54 9.94 22.34 0.22 -2.31 16 16 C 0.07 1.67 6.50 22.64 0.15 1.82 16 17 C 0.05 1.18 6.49 22.54 0.15 1.33 16 18 C -0.09 -2.71 9.60 22.58 0.22 -2.49 16 19 O -0.32 -7.21 10.42 -82.87 -0.86 -8.07 16 20 C 0.01 0.13 7.26 72.14 0.52 0.65 16 21 C 0.01 0.14 7.26 72.14 0.52 0.66 16 22 O -0.31 -5.86 10.41 -82.22 -0.86 -6.71 16 23 N -0.41 -17.42 11.85 -59.04 -0.70 -18.12 16 24 O 0.06 2.62 11.29 74.59 0.84 3.46 16 25 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 26 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 27 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.15 4.23 7.87 -2.91 -0.02 4.20 16 29 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.13 4.24 7.86 -2.91 -0.02 4.22 16 31 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -65.12 306.32 2.96 -62.15 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.14 Total: 3.92 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 4.49 Total: -4.13 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -3.82 Total: -94.85 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.88 Total: -11.32 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -65.12 2.96 -62.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.391 kcal (2) G-P(sol) polarization free energy of solvation -65.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds