Wall clock time and date at job start Tue Mar 31 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39679 * 120.08255 * 80.55486 * 3 2 1 5 5 C 1.38226 * 120.06683 * 180.02562 * 4 3 2 6 6 F 1.35096 * 119.88952 * 180.02562 * 5 4 3 7 7 C 1.38389 * 120.22607 * 359.97438 * 5 4 3 8 8 C 1.39382 * 120.15466 * 359.97438 * 7 5 4 9 9 C 1.48443 * 120.03107 * 180.02562 * 8 7 5 10 10 N 1.30750 * 126.41419 * 179.68633 * 9 8 7 11 11 O 1.21289 * 110.09871 * 179.80245 * 10 9 8 12 12 C 1.33669 * 110.02634 * 0.46514 * 11 10 9 13 13 C 1.50694 * 126.44000 * 179.72976 * 12 11 10 14 14 H 1.09002 * 109.47434 * 194.97948 * 13 12 11 15 15 N 1.46903 * 109.47540 * 314.97907 * 13 12 11 16 16 C 1.50700 * 109.47189 * 74.97980 * 13 12 11 17 17 H 1.08001 * 119.99793 * 359.97438 * 16 13 12 18 18 C 1.37881 * 120.00072 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99987 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99916 * 179.97438 * 18 16 13 21 21 H 1.48497 * 109.46910 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47013 * 119.99900 * 20 18 16 23 23 H 1.48501 * 109.47146 * 240.00146 * 20 18 16 24 24 N 1.30980 * 107.12130 * 359.71249 * 12 11 10 25 25 C 1.39081 * 119.93523 * 359.78643 * 8 7 5 26 26 H 1.08009 * 119.96403 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.92243 * 179.97438 * 7 5 4 28 28 H 1.00909 * 110.99642 * 296.04908 * 15 13 12 29 29 H 1.00898 * 110.99969 * 59.99907 * 15 13 12 30 30 H 0.97000 * 119.99801 * 180.02562 * 19 18 16 31 31 H 1.08009 * 120.11130 * 180.25906 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 -0.1974 -1.1923 5 6 4.6505 -0.1972 -1.1918 6 9 5.3241 -0.3886 -2.3471 7 6 5.3467 -0.0007 -0.0121 8 6 4.6574 0.1989 1.1828 9 6 5.4070 0.4100 2.4466 10 7 4.8908 0.6136 3.6305 11 8 5.7727 0.7451 4.4527 12 6 6.9677 0.6465 3.8620 13 6 8.3111 0.7586 4.5355 14 1 9.0849 0.9020 3.7813 15 7 8.3043 1.9050 5.4541 16 6 8.5918 -0.5036 5.3095 17 1 7.8695 -1.3065 5.3137 18 6 9.7709 -0.6334 6.0124 19 7 10.6503 0.3445 6.0078 20 14 10.1186 -2.1977 6.9724 21 1 8.9790 -3.1371 6.8176 22 1 11.3566 -2.8323 6.4531 23 1 10.2968 -1.8675 8.4093 24 7 6.7516 0.4336 2.5878 25 6 3.2666 0.2050 1.1891 26 1 2.7290 -0.3508 -2.1155 27 1 6.4267 -0.0019 -0.0173 28 1 8.1821 2.7709 4.9507 29 1 7.5949 1.7958 6.1633 30 1 11.4799 0.2530 6.5020 31 1 2.7296 0.3635 2.1127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248225880.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:31 Heat of formation + Delta-G solvation = 63.380973 kcal Electronic energy + Delta-G solvation = -20822.884760 eV Core-core repulsion = 17214.673603 eV Total energy + Delta-G solvation = -3608.211158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.03633 -46.48061 -40.62268 -37.80304 -37.16757 -36.51378 -34.08193 -33.04641 -32.47118 -31.38734 -28.41520 -26.17515 -25.79855 -24.85927 -23.91357 -22.05655 -20.27358 -19.25605 -18.47166 -18.24047 -17.61138 -17.56274 -17.26264 -16.77036 -16.64420 -16.35896 -15.90705 -15.27929 -15.16272 -14.78555 -14.63801 -14.42484 -14.00980 -13.83859 -13.81951 -13.29219 -13.13168 -12.92471 -12.74840 -12.72221 -12.59605 -12.16775 -12.02651 -11.67994 -11.00825 -10.61177 -10.18428 -9.95996 -9.36129 -8.08760 -6.32212 -0.76634 -0.43844 0.29269 1.15751 1.39496 1.47668 1.51552 1.60373 1.79612 1.90625 2.20485 2.46050 2.53873 2.56609 2.82418 3.18439 3.32463 3.64023 3.66183 3.80549 3.98792 4.16376 4.21746 4.51660 4.68919 4.70508 4.80539 4.90401 5.01867 5.15329 5.41382 5.65161 5.86204 6.23573 6.41708 6.84671 6.99860 7.13252 7.41264 8.95787 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.003522 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.185145 B = 7949.103732 C = 8356.054854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.282 3.718 3 C 0.008 3.992 4 C -0.064 4.064 5 C 0.108 3.892 6 F -0.126 7.126 7 C -0.080 4.080 8 C 0.003 3.997 9 C 0.196 3.804 10 N -0.397 5.397 11 O 0.064 5.936 12 C 0.202 3.798 13 C 0.317 3.683 14 H 0.067 0.933 15 N -0.804 5.804 16 C -0.558 4.558 17 H 0.049 0.951 18 C 0.051 3.949 19 N -0.867 5.867 20 Si 0.955 3.045 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.277 1.277 24 N -0.507 5.507 25 C -0.039 4.039 26 H 0.185 0.815 27 H 0.151 0.849 28 H 0.323 0.677 29 H 0.337 0.663 30 H 0.264 0.736 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.919 0.418 -12.525 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.033 4.033 3 C 0.004 3.996 4 C -0.085 4.085 5 C 0.088 3.912 6 F -0.105 7.105 7 C -0.101 4.101 8 C 0.001 3.999 9 C -0.074 4.074 10 N -0.108 5.108 11 O 0.010 5.990 12 C -0.020 4.020 13 C 0.203 3.797 14 H 0.085 0.915 15 N -0.332 5.332 16 C -0.598 4.598 17 H 0.067 0.933 18 C -0.156 4.156 19 N -0.500 5.500 20 Si 0.780 3.220 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.203 1.203 24 N -0.241 5.241 25 C -0.062 4.062 26 H 0.202 0.798 27 H 0.169 0.831 28 H 0.136 0.864 29 H 0.150 0.850 30 H 0.073 0.927 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.433 0.269 -12.531 17.654 hybrid contribution 0.222 -0.560 0.378 0.712 sum -12.211 -0.291 -12.152 17.230 Atomic orbital electron populations 1.81325 1.12766 1.09410 1.07862 1.25240 0.91980 0.92962 0.93112 1.15199 0.84002 1.06759 0.93609 1.21452 0.91755 0.96106 0.99236 1.16977 0.89652 1.03136 0.81412 1.91582 1.80208 1.92562 1.46118 1.21434 1.02477 0.96187 0.90009 1.16795 0.91496 1.04253 0.87391 1.24183 0.87825 1.01361 0.94014 1.74742 1.13739 1.22201 1.00164 1.85219 1.13436 1.65386 1.34998 1.31736 0.92901 0.90115 0.87275 1.17986 0.78760 0.92214 0.90730 0.91495 1.58962 1.55708 1.02700 1.15791 1.20864 1.04828 0.99978 1.34086 0.93276 1.25502 0.95238 0.98648 0.96199 1.70161 1.08241 1.31966 1.39678 0.85583 0.78011 0.79780 0.78607 1.19890 1.20354 1.20267 1.72042 1.12965 1.22633 1.16445 1.21196 0.91749 0.94711 0.98543 0.79804 0.83117 0.86405 0.85002 0.92701 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.96 18.54 19.00 0.35 -9.61 16 2 C 0.28 5.02 15.32 88.33 1.35 6.38 16 3 C 0.01 0.12 5.73 -21.40 -0.12 0.00 16 4 C -0.06 -0.76 9.72 22.62 0.22 -0.54 16 5 C 0.11 1.72 7.28 22.30 0.16 1.88 16 6 F -0.13 -2.14 17.26 44.97 0.78 -1.36 16 7 C -0.08 -1.68 9.67 22.58 0.22 -1.46 16 8 C 0.00 0.07 5.87 -20.08 -0.12 -0.05 16 9 C 0.20 6.58 7.80 137.31 1.07 7.66 16 10 N -0.40 -14.12 11.85 -59.15 -0.70 -14.82 16 11 O 0.06 2.49 11.27 74.61 0.84 3.33 16 12 C 0.20 8.22 7.22 88.35 0.64 8.86 16 13 C 0.32 14.32 3.16 43.42 0.14 14.46 16 14 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 15 N -0.80 -33.25 8.53 -174.95 -1.49 -34.74 16 16 C -0.56 -28.23 8.71 25.60 0.22 -28.01 16 17 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 18 C 0.05 2.57 5.39 84.66 0.46 3.03 16 19 N -0.87 -45.85 12.77 21.45 0.27 -45.58 16 20 Si 0.95 40.61 29.54 68.60 2.03 42.64 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 24 N -0.51 -19.49 11.25 -302.53 -3.40 -22.89 16 25 C -0.04 -0.77 9.39 22.76 0.21 -0.56 16 26 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 27 H 0.15 3.46 7.86 -2.91 -0.02 3.43 16 28 H 0.32 11.57 9.06 -89.69 -0.81 10.76 16 29 H 0.34 13.23 8.96 -89.70 -0.80 12.43 16 30 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 31 H 0.15 2.91 7.86 -2.91 -0.02 2.89 16 Total: -1.00 -57.95 303.59 2.75 -55.20 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.38 Total: 16.20 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 4.45 Total: 11.64 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -4.97 Total: -127.64 kcal Atomic # 8 Polarization: 2.49 SS G_CDS: 0.84 Total: 3.33 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.78 Total: -1.36 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -57.95 2.75 -55.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225880.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.584 kcal (2) G-P(sol) polarization free energy of solvation -57.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds