Wall clock time and date at job start Tue Mar 31 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39789 * 120.06306 * 347.12085 * 3 2 1 5 5 C 1.37879 * 120.12347 * 179.97438 * 4 3 2 6 6 C 1.38480 * 120.24869 * 359.78222 * 5 4 3 7 7 F 1.35106 * 119.93784 * 180.25193 * 6 5 4 8 8 C 1.39686 * 120.12675 * 0.47519 * 6 5 4 9 9 C 1.48381 * 120.06195 * 179.78421 * 8 6 5 10 10 N 1.30780 * 126.41658 * 179.69107 * 9 8 6 11 11 O 1.21290 * 110.09817 * 179.76357 * 10 9 8 12 12 C 1.33672 * 110.02527 * 0.41533 * 11 10 9 13 13 C 1.50706 * 126.43270 * 179.86066 * 12 11 10 14 14 H 1.09001 * 109.46953 * 194.68116 * 13 12 11 15 15 N 1.46899 * 109.47101 * 314.68283 * 13 12 11 16 16 C 1.50698 * 109.47294 * 74.68673 * 13 12 11 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99944 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47548 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47233 * 119.99722 * 20 18 16 23 23 H 1.48500 * 109.46790 * 239.99650 * 20 18 16 24 24 N 1.30972 * 107.12853 * 359.59230 * 12 11 10 25 25 C 1.39021 * 119.87582 * 359.50599 * 8 6 5 26 26 H 1.08002 * 119.93652 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.87273 * 180.02562 * 5 4 3 28 28 H 1.00903 * 110.99644 * 296.04622 * 15 13 12 29 29 H 1.00897 * 110.99782 * 60.00139 * 15 13 12 30 30 H 0.96997 * 119.99752 * 180.02562 * 19 18 16 31 31 H 1.08007 * 120.12578 * 180.27745 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -1.1785 0.2697 5 6 4.6476 -1.1794 0.2695 6 6 5.3459 -0.0148 -0.0020 7 9 6.6969 -0.0240 -0.0055 8 6 4.6562 1.1706 -0.2675 9 6 5.4060 2.4187 -0.5535 10 7 4.8901 3.5900 -0.8224 11 8 5.7723 4.4024 -1.0035 12 6 6.9671 3.8170 -0.8743 13 6 8.3108 4.4824 -1.0261 14 1 9.0844 3.7207 -1.1235 15 7 8.3046 5.3303 -2.2256 16 6 8.5913 5.3307 0.1874 17 1 7.8686 5.3832 0.9883 18 6 9.7699 6.0407 0.2748 19 7 10.6497 5.9771 -0.7008 20 14 10.1172 7.0928 1.7787 21 1 8.9773 6.9950 2.7253 22 1 11.3556 6.6130 2.4432 23 1 10.2948 8.5073 1.3628 24 7 6.7506 2.5580 -0.5854 25 6 3.2660 1.1774 -0.2691 26 1 2.7292 -2.0904 0.4786 27 1 5.1849 -2.0927 0.4779 28 1 8.1827 4.7758 -3.0598 29 1 7.5954 6.0449 -2.1596 30 1 11.4791 6.4763 -0.6391 31 1 2.7286 2.0906 -0.4783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248226063.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:37 Heat of formation + Delta-G solvation = 84.693295 kcal Electronic energy + Delta-G solvation = -21147.196303 eV Core-core repulsion = 17539.909316 eV Total energy + Delta-G solvation = -3607.286986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.99769 -44.96643 -39.68277 -36.74976 -35.54295 -35.04781 -32.54821 -31.62012 -31.33331 -30.24119 -26.56003 -24.85613 -24.41068 -23.41916 -22.70021 -20.74072 -18.98714 -17.82523 -17.67339 -17.05673 -16.56281 -16.33784 -15.74770 -15.27582 -14.82759 -14.61450 -14.26483 -14.25894 -14.17261 -13.86838 -13.63482 -12.86764 -12.80531 -12.68433 -12.55141 -12.28230 -11.63702 -11.48089 -11.43747 -11.01991 -10.94065 -10.53070 -10.31956 -10.01671 -9.44830 -9.22302 -8.77766 -8.64716 -7.68203 -6.12639 -4.30678 0.15102 0.49763 1.75261 2.30052 2.34792 2.92390 3.24496 3.32948 3.33463 3.36641 3.44718 3.51502 3.67103 3.83514 4.18905 4.32188 4.43730 4.50923 4.88296 5.13000 5.14504 5.36152 5.42214 5.61859 5.67000 5.78424 5.90851 6.19812 6.32844 6.46534 6.96556 7.12284 7.62737 7.76233 8.18847 8.58471 8.66312 8.79443 9.39658 10.92004 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.003725 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.260774 B = 7515.791548 C = 7781.185328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.260 3.740 3 C -0.047 4.047 4 C -0.029 4.029 5 C -0.159 4.159 6 C 0.174 3.826 7 F -0.101 7.101 8 C -0.041 4.041 9 C 0.185 3.815 10 N -0.391 5.391 11 O 0.074 5.926 12 C 0.206 3.794 13 C 0.309 3.691 14 H 0.090 0.910 15 N -0.798 5.798 16 C -0.544 4.544 17 H 0.060 0.940 18 C 0.090 3.910 19 N -0.840 5.840 20 Si 0.897 3.103 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.281 1.281 24 N -0.489 5.489 25 C -0.011 4.011 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.307 0.693 29 H 0.331 0.669 30 H 0.262 0.738 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -12.530 0.011 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.056 4.056 3 C -0.050 4.050 4 C -0.050 4.050 5 C -0.178 4.178 6 C 0.152 3.848 7 F -0.079 7.079 8 C -0.044 4.044 9 C -0.084 4.084 10 N -0.101 5.101 11 O 0.015 5.985 12 C -0.015 4.015 13 C 0.196 3.804 14 H 0.107 0.893 15 N -0.324 5.324 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.119 4.119 19 N -0.473 5.473 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.207 1.207 24 N -0.222 5.222 25 C -0.034 4.034 26 H 0.165 0.835 27 H 0.173 0.827 28 H 0.119 0.881 29 H 0.144 0.856 30 H 0.072 0.928 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.576 -12.499 0.167 17.037 hybrid contribution 0.047 0.393 0.671 0.779 sum -11.529 -12.106 0.838 16.738 Atomic orbital electron populations 1.81275 1.11844 1.06943 1.08719 1.25413 0.92289 0.94088 0.93802 1.15752 0.84786 0.94995 1.09495 1.21108 0.93128 0.96957 0.93830 1.21050 0.94195 0.97831 1.04720 1.17913 0.78196 0.92948 0.95763 1.91681 1.27053 1.96836 1.92300 1.17241 0.91914 0.88809 1.06425 1.23490 0.88554 0.93114 1.03292 1.74758 1.14233 1.00250 1.20855 1.85225 1.13752 1.35200 1.64282 1.32309 0.93008 0.86883 0.89345 1.18454 0.78159 0.92172 0.91647 0.89268 1.59146 1.55223 1.15642 1.02431 1.20660 1.04904 1.30814 1.01942 0.92219 1.24864 0.95379 0.95712 0.95912 1.70083 1.07864 1.38977 1.30339 0.86480 0.78387 0.80151 0.82618 1.19724 1.20724 1.20660 1.72197 1.11297 1.16836 1.21825 1.21068 0.91576 0.97814 0.92901 0.83476 0.82743 0.88148 0.85636 0.92820 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.12 18.54 41.83 0.78 -4.35 16 2 C 0.26 2.64 15.32 -22.47 -0.34 2.30 16 3 C -0.05 -0.42 5.73 -106.94 -0.61 -1.03 16 4 C -0.03 -0.20 9.74 -39.13 -0.38 -0.58 16 5 C -0.16 -1.25 10.00 -39.62 -0.40 -1.65 16 6 C 0.17 2.13 7.28 -38.95 -0.28 1.84 16 7 F -0.10 -1.52 15.78 2.25 0.04 -1.48 16 8 C -0.04 -0.57 5.88 -104.89 -0.62 -1.19 16 9 C 0.19 3.36 7.78 -156.11 -1.21 2.15 16 10 N -0.39 -7.33 11.85 30.97 0.37 -6.97 16 11 O 0.07 1.48 11.28 18.03 0.20 1.69 16 12 C 0.21 4.35 7.22 -12.99 -0.09 4.25 16 13 C 0.31 7.10 3.16 -70.01 -0.22 6.87 16 14 H 0.09 2.22 8.14 -51.93 -0.42 1.80 16 15 N -0.80 -16.84 8.53 -6.65 -0.06 -16.89 16 16 C -0.54 -13.92 8.71 -34.44 -0.30 -14.22 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.09 2.34 5.39 -17.82 -0.10 2.24 16 19 N -0.84 -22.48 12.77 55.43 0.71 -21.77 16 20 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 N -0.49 -10.04 10.23 -9.88 -0.10 -10.14 16 25 C -0.01 -0.12 9.39 -38.84 -0.36 -0.49 16 26 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 27 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.31 5.67 9.06 -39.29 -0.36 5.32 16 29 H 0.33 6.64 8.97 -39.29 -0.35 6.28 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.15 1.65 7.86 -52.48 -0.41 1.23 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -29.21 301.64 -5.40 -34.61 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -1.93 Total: 5.15 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -4.93 Total: 0.51 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 1.69 Total: -60.12 kcal Atomic # 8 Polarization: 1.48 SS G_CDS: 0.20 Total: 1.69 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.21 -5.40 -34.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248226063.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.305 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds