Wall clock time and date at job start Tue Mar 31 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39789 * 120.06306 * 347.12085 * 3 2 1 5 5 C 1.37879 * 120.12347 * 179.97438 * 4 3 2 6 6 C 1.38480 * 120.24869 * 359.78222 * 5 4 3 7 7 F 1.35106 * 119.93784 * 180.25193 * 6 5 4 8 8 C 1.39686 * 120.12675 * 0.47519 * 6 5 4 9 9 C 1.48381 * 120.06195 * 179.78421 * 8 6 5 10 10 N 1.30780 * 126.41658 * 179.69107 * 9 8 6 11 11 O 1.21290 * 110.09817 * 179.76357 * 10 9 8 12 12 C 1.33672 * 110.02527 * 0.41533 * 11 10 9 13 13 C 1.50706 * 126.43270 * 179.86066 * 12 11 10 14 14 H 1.09001 * 109.46953 * 194.68116 * 13 12 11 15 15 N 1.46899 * 109.47101 * 314.68283 * 13 12 11 16 16 C 1.50698 * 109.47294 * 74.68673 * 13 12 11 17 17 H 1.08005 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00046 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99944 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99979 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47548 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47233 * 119.99722 * 20 18 16 23 23 H 1.48500 * 109.46790 * 239.99650 * 20 18 16 24 24 N 1.30972 * 107.12853 * 359.59230 * 12 11 10 25 25 C 1.39021 * 119.87582 * 359.50599 * 8 6 5 26 26 H 1.08002 * 119.93652 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.87273 * 180.02562 * 5 4 3 28 28 H 1.00903 * 110.99644 * 296.04622 * 15 13 12 29 29 H 1.00897 * 110.99782 * 60.00139 * 15 13 12 30 30 H 0.96997 * 119.99752 * 180.02562 * 19 18 16 31 31 H 1.08007 * 120.12578 * 180.27745 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -1.1785 0.2697 5 6 4.6476 -1.1794 0.2695 6 6 5.3459 -0.0148 -0.0020 7 9 6.6969 -0.0240 -0.0055 8 6 4.6562 1.1706 -0.2675 9 6 5.4060 2.4187 -0.5535 10 7 4.8901 3.5900 -0.8224 11 8 5.7723 4.4024 -1.0035 12 6 6.9671 3.8170 -0.8743 13 6 8.3108 4.4824 -1.0261 14 1 9.0844 3.7207 -1.1235 15 7 8.3046 5.3303 -2.2256 16 6 8.5913 5.3307 0.1874 17 1 7.8686 5.3832 0.9883 18 6 9.7699 6.0407 0.2748 19 7 10.6497 5.9771 -0.7008 20 14 10.1172 7.0928 1.7787 21 1 8.9773 6.9950 2.7253 22 1 11.3556 6.6130 2.4432 23 1 10.2948 8.5073 1.3628 24 7 6.7506 2.5580 -0.5854 25 6 3.2660 1.1774 -0.2691 26 1 2.7292 -2.0904 0.4786 27 1 5.1849 -2.0927 0.4779 28 1 8.1827 4.7758 -3.0598 29 1 7.5954 6.0449 -2.1596 30 1 11.4791 6.4763 -0.6391 31 1 2.7286 2.0906 -0.4783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248226063.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:36 Heat of formation + Delta-G solvation = 64.283072 kcal Electronic energy + Delta-G solvation = -21148.081356 eV Core-core repulsion = 17539.909316 eV Total energy + Delta-G solvation = -3608.172040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.01231 -46.47696 -40.51515 -37.67932 -37.18812 -36.57563 -34.12514 -33.09895 -32.20086 -31.56187 -28.43691 -25.98660 -25.77758 -24.64941 -24.01409 -22.08238 -20.10775 -19.27107 -18.76584 -18.38863 -18.16890 -17.57164 -16.75092 -16.73764 -16.38993 -16.22999 -15.40789 -15.12247 -15.05038 -14.94757 -14.73229 -14.64764 -13.95565 -13.72710 -13.63749 -13.50569 -13.23749 -12.92864 -12.73151 -12.65340 -12.45450 -12.15942 -11.99879 -11.71561 -11.03455 -10.62701 -10.19241 -9.84034 -9.39047 -8.10178 -6.34079 -0.72178 -0.37455 0.30860 1.22914 1.46392 1.47205 1.49634 1.59174 1.79280 1.90226 2.32751 2.45995 2.60663 2.64734 2.85750 3.06926 3.19761 3.55068 3.72066 3.99893 4.13236 4.18920 4.36359 4.60877 4.72742 4.76551 4.87051 4.90380 5.01864 5.13425 5.48651 5.63078 5.84428 6.31810 6.39203 6.82062 6.97298 7.11914 7.39212 8.94583 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.003725 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.260774 B = 7515.791548 C = 7781.185328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.284 3.716 3 C -0.039 4.039 4 C 0.005 3.995 5 C -0.137 4.137 6 C 0.157 3.843 7 F -0.124 7.124 8 C -0.077 4.077 9 C 0.194 3.806 10 N -0.399 5.399 11 O 0.063 5.937 12 C 0.199 3.801 13 C 0.318 3.682 14 H 0.065 0.935 15 N -0.803 5.803 16 C -0.559 4.559 17 H 0.047 0.953 18 C 0.050 3.950 19 N -0.867 5.867 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.277 1.277 23 H -0.275 1.275 24 N -0.504 5.504 25 C -0.006 4.006 26 H 0.194 0.806 27 H 0.192 0.808 28 H 0.323 0.677 29 H 0.337 0.663 30 H 0.264 0.736 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.318 -14.600 0.854 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.031 4.031 3 C -0.043 4.043 4 C -0.015 4.015 5 C -0.155 4.155 6 C 0.135 3.865 7 F -0.102 7.102 8 C -0.080 4.080 9 C -0.076 4.076 10 N -0.112 5.112 11 O 0.009 5.991 12 C -0.023 4.023 13 C 0.204 3.796 14 H 0.082 0.918 15 N -0.330 5.330 16 C -0.598 4.598 17 H 0.066 0.934 18 C -0.157 4.157 19 N -0.500 5.500 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.202 1.202 23 H -0.201 1.201 24 N -0.238 5.238 25 C -0.029 4.029 26 H 0.211 0.789 27 H 0.209 0.791 28 H 0.135 0.865 29 H 0.150 0.850 30 H 0.074 0.926 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.796 -14.545 0.996 19.398 hybrid contribution 0.304 0.873 0.406 1.010 sum -12.492 -13.672 1.402 18.573 Atomic orbital electron populations 1.81320 1.12985 1.08138 1.10052 1.25383 0.92131 0.92948 0.92642 1.15719 0.84024 0.95105 1.09439 1.21616 0.92592 0.97407 0.89898 1.21423 0.94471 0.97243 1.02377 1.18345 0.77424 0.93951 0.96786 1.91624 1.28903 1.96989 1.92719 1.17340 0.92735 0.87826 1.10132 1.24198 0.87888 0.94335 1.01204 1.74726 1.13693 1.00556 1.22196 1.85199 1.13455 1.35652 1.64839 1.31804 0.92952 0.87277 0.90316 1.17962 0.78634 0.91343 0.91615 0.91780 1.58967 1.55660 1.15878 1.02495 1.20850 1.04932 1.31417 1.02648 0.93423 1.25526 0.95141 0.96675 0.98320 1.70168 1.08228 1.39784 1.31867 0.85550 0.78015 0.78736 0.79479 1.19965 1.20212 1.20079 1.72184 1.12934 1.16584 1.22115 1.20968 0.90493 0.98673 0.92748 0.78894 0.79095 0.86475 0.85013 0.92644 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.23 18.54 19.00 0.35 -9.88 16 2 C 0.28 4.98 15.32 88.33 1.35 6.34 16 3 C -0.04 -0.57 5.73 -21.37 -0.12 -0.69 16 4 C 0.01 0.04 9.74 22.56 0.22 0.26 16 5 C -0.14 -1.54 10.00 22.24 0.22 -1.32 16 6 C 0.16 3.57 7.28 22.68 0.17 3.73 16 7 F -0.12 -3.68 15.78 44.97 0.71 -2.97 16 8 C -0.08 -2.09 5.88 -20.04 -0.12 -2.21 16 9 C 0.19 7.16 7.78 137.28 1.07 8.23 16 10 N -0.40 -15.33 11.85 -59.10 -0.70 -16.03 16 11 O 0.06 2.60 11.28 74.59 0.84 3.44 16 12 C 0.20 8.68 7.22 88.36 0.64 9.32 16 13 C 0.32 15.14 3.16 43.42 0.14 15.28 16 14 H 0.06 3.35 8.14 -2.39 -0.02 3.33 16 15 N -0.80 -34.69 8.53 -174.95 -1.49 -36.18 16 16 C -0.56 -29.37 8.71 25.60 0.22 -29.15 16 17 H 0.05 2.56 7.74 -2.91 -0.02 2.53 16 18 C 0.05 2.60 5.39 84.65 0.46 3.06 16 19 N -0.87 -46.96 12.77 21.45 0.27 -46.68 16 20 Si 0.96 41.58 29.54 68.60 2.03 43.60 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 24 N -0.50 -21.37 10.23 -302.47 -3.10 -24.46 16 25 C -0.01 -0.13 9.39 22.75 0.21 0.08 16 26 H 0.19 0.00 8.06 -2.91 -0.02 -0.02 16 27 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 28 H 0.32 12.18 9.06 -89.69 -0.81 11.37 16 29 H 0.34 13.81 8.97 -89.70 -0.80 13.01 16 30 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 31 H 0.14 3.10 7.86 -2.91 -0.02 3.07 16 Total: -1.00 -65.49 301.64 2.99 -62.50 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -0.38 Total: 13.72 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 4.46 Total: 12.95 kcal Atomic # 7 Polarization: -128.57 SS G_CDS: -4.66 Total: -133.23 kcal Atomic # 8 Polarization: 2.60 SS G_CDS: 0.84 Total: 3.44 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.71 Total: -2.97 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -65.49 2.99 -62.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248226063.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.780 kcal (2) G-P(sol) polarization free energy of solvation -65.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds