Wall clock time and date at job start Tue Mar 31 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86794 * 120.00110 * 2 1 4 4 H 1.48495 * 109.47385 * 270.46876 * 3 2 1 5 5 H 1.48507 * 109.47000 * 30.46554 * 3 2 1 6 6 H 1.48498 * 109.47263 * 150.46341 * 3 2 1 7 7 C 1.39884 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00394 * 337.10587 * 7 2 1 9 9 C 1.40999 * 119.99835 * 157.10737 * 7 2 1 10 10 C 1.40751 * 120.31183 * 331.70002 * 9 7 2 11 11 C 1.36411 * 119.95458 * 179.69965 * 10 9 7 12 12 C 1.38948 * 120.61586 * 0.30670 * 11 10 9 13 13 C 1.38087 * 120.63524 * 359.97438 * 12 11 10 14 14 C 1.38852 * 120.02407 * 359.97438 * 13 12 11 15 15 N 1.38590 * 120.30492 * 180.02562 * 14 13 12 16 16 C 1.39850 * 119.99572 * 315.41982 * 15 14 13 17 17 C 1.38944 * 120.01272 * 353.10653 * 16 15 14 18 18 C 1.38034 * 120.00568 * 179.71758 * 17 16 15 19 19 C 1.38935 * 120.02382 * 0.55046 * 18 17 16 20 20 N 1.39880 * 119.98554 * 179.70126 * 19 18 17 21 21 C 1.38890 * 120.02283 * 359.72843 * 19 18 17 22 22 C 1.38141 * 119.99351 * 359.97438 * 21 19 18 23 23 Cl 1.73597 * 120.01502 * 179.97438 * 22 21 19 24 24 H 0.97001 * 120.00012 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.01683 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.69257 * 180.27508 * 11 10 9 27 27 H 1.07998 * 119.68151 * 179.97438 * 12 11 10 28 28 H 1.08004 * 119.99089 * 179.97438 * 13 12 11 29 29 H 0.96997 * 119.99808 * 135.42205 * 15 14 13 30 30 H 1.08002 * 119.99434 * 359.97438 * 17 16 15 31 31 H 1.08000 * 119.98151 * 180.25285 * 18 17 16 32 32 H 0.97001 * 119.99553 * 180.02562 * 20 19 18 33 33 H 0.96999 * 119.99965 * 0.02562 * 20 19 18 34 34 H 1.08001 * 120.00340 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4806 2.0521 -1.4000 5 1 1.4454 2.6498 0.7099 6 1 3.5454 1.4373 0.6902 7 6 2.0084 -1.2115 0.0005 8 1 1.5322 -2.1098 0.3648 9 6 3.3351 -1.2598 -0.4745 10 6 3.7729 -0.3477 -1.4530 11 6 5.0598 -0.3971 -1.9029 12 6 5.9463 -1.3460 -1.4087 13 6 5.5416 -2.2565 -0.4526 14 6 4.2380 -2.2294 0.0248 15 7 3.8257 -3.1401 0.9847 16 6 4.1701 -4.4899 0.8614 17 6 4.8002 -4.9440 -0.2907 18 6 5.1453 -6.2752 -0.4098 19 6 4.8526 -7.1638 0.6173 20 7 5.1971 -8.5139 0.4932 21 6 4.2176 -6.7123 1.7671 22 6 3.8774 -5.3790 1.8897 23 17 3.0831 -4.8141 3.3263 24 1 -0.4850 0.8401 0.0004 25 1 3.0917 0.3936 -1.8440 26 1 5.3925 0.3077 -2.6505 27 1 6.9616 -1.3718 -1.7758 28 1 6.2392 -2.9899 -0.0760 29 1 3.2984 -2.8413 1.7419 30 1 5.0236 -4.2545 -1.0914 31 1 5.6387 -6.6269 -1.3038 32 1 4.9925 -9.1345 1.2100 33 1 5.6405 -8.8294 -0.3098 34 1 3.9906 -7.4032 2.5655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249735686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:49 Heat of formation + Delta-G solvation = 25.770628 kcal Electronic energy + Delta-G solvation = -19748.406547 eV Core-core repulsion = 16670.441201 eV Total energy + Delta-G solvation = -3077.965346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94485 -39.51969 -37.45773 -36.68318 -35.51497 -34.01975 -32.32706 -31.60833 -30.34432 -28.01230 -26.73121 -24.02717 -23.42183 -22.57569 -21.59825 -19.32247 -18.52379 -18.40499 -17.76314 -17.21536 -16.71056 -15.84145 -15.79274 -15.39936 -15.10020 -14.80633 -14.69368 -14.55566 -14.14728 -13.80086 -13.57527 -13.30657 -12.97078 -12.83781 -12.54227 -12.38476 -12.22443 -11.97681 -11.81150 -11.66704 -11.47879 -10.97650 -10.30813 -9.70498 -9.47592 -9.04531 -8.89997 -7.60728 -6.35294 0.32889 0.57080 0.84156 1.06949 1.27432 1.28318 1.42736 1.49486 2.12460 2.61560 2.75230 2.92722 3.21899 3.54447 3.95224 4.24000 4.34121 4.47000 4.50441 4.56276 4.75603 4.88108 4.97460 5.08416 5.11099 5.26728 5.34559 5.43513 5.46835 5.74276 5.78348 5.83809 6.05908 6.22508 6.38819 6.55504 6.72118 6.81403 6.96453 7.08553 7.18724 8.18069 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.005594 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.034449 B = 5003.888234 C = 5986.393402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.052 3.948 3 Si 0.963 3.037 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.054 0.946 9 C 0.052 3.948 10 C -0.236 4.236 11 C -0.099 4.099 12 C -0.206 4.206 13 C -0.107 4.107 14 C 0.048 3.952 15 N -0.667 5.667 16 C 0.151 3.849 17 C -0.146 4.146 18 C -0.142 4.142 19 C 0.174 3.826 20 N -0.869 5.869 21 C -0.151 4.151 22 C -0.080 4.080 23 Cl -0.082 7.082 24 H 0.292 0.708 25 H 0.098 0.902 26 H 0.125 0.875 27 H 0.133 0.867 28 H 0.120 0.880 29 H 0.398 0.602 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.405 0.595 33 H 0.407 0.593 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.685 -11.287 0.750 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.163 4.163 3 Si 0.786 3.214 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.047 3.953 10 C -0.256 4.256 11 C -0.118 4.118 12 C -0.225 4.225 13 C -0.128 4.128 14 C -0.048 4.048 15 N -0.288 5.288 16 C 0.048 3.952 17 C -0.168 4.168 18 C -0.165 4.165 19 C 0.068 3.932 20 N -0.412 5.412 21 C -0.175 4.175 22 C -0.112 4.112 23 Cl -0.054 7.054 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.143 0.857 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.234 0.766 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.234 0.766 33 H 0.237 0.763 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.362 -11.055 0.798 15.173 hybrid contribution -0.774 0.674 0.574 1.176 sum 9.588 -10.381 1.372 14.198 Atomic orbital electron populations 1.69804 1.09251 1.31348 1.36618 1.26779 0.95114 1.04059 0.90368 0.85577 0.79199 0.76836 0.79752 1.17953 1.20585 1.18294 1.19154 0.96352 0.95917 1.38976 0.92763 1.17865 0.91830 0.94049 0.91541 1.20858 0.97875 1.04267 1.02605 1.20706 0.93095 0.98505 0.99467 1.20710 1.00033 0.99024 1.02783 1.20875 0.92892 0.99818 0.99226 1.17760 0.92505 0.97329 0.97204 1.41524 1.58081 1.03338 1.25887 1.17772 0.99124 0.84055 0.94271 1.20837 1.02854 0.96924 0.96212 1.20695 1.04472 0.91595 0.99722 1.17402 0.96250 0.86435 0.93107 1.42177 1.69937 1.04551 1.24526 1.20265 1.04878 0.92929 0.99391 1.20197 1.07520 0.94437 0.89032 1.98319 1.79396 1.89717 1.37939 0.89743 0.88415 0.85715 0.84920 0.86218 0.76590 0.85165 0.83333 0.76585 0.76310 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.52 13.93 21.82 0.30 -46.22 16 2 C 0.05 2.79 5.34 85.23 0.45 3.24 16 3 Si 0.96 42.92 24.82 68.60 1.70 44.62 16 4 H -0.25 -10.69 6.42 99.48 0.64 -10.05 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.47 -26.47 8.93 23.35 0.21 -26.26 16 8 H 0.05 3.31 7.76 -2.91 -0.02 3.29 16 9 C 0.05 2.61 5.12 -21.16 -0.11 2.50 16 10 C -0.24 -11.02 7.35 22.46 0.16 -10.85 16 11 C -0.10 -3.91 9.96 22.01 0.22 -3.69 16 12 C -0.21 -7.55 10.03 22.40 0.22 -7.32 16 13 C -0.11 -4.22 7.39 22.38 0.17 -4.06 16 14 C 0.05 2.20 5.81 39.05 0.23 2.42 16 15 N -0.67 -28.75 4.81 -179.14 -0.86 -29.61 16 16 C 0.15 5.68 6.43 38.23 0.25 5.92 16 17 C -0.15 -4.88 8.13 22.39 0.18 -4.70 16 18 C -0.14 -3.70 9.89 22.39 0.22 -3.48 16 19 C 0.17 4.11 6.76 38.18 0.26 4.37 16 20 N -0.87 -13.02 9.10 -51.24 -0.47 -13.48 16 21 C -0.15 -4.06 9.67 22.40 0.22 -3.84 16 22 C -0.08 -2.68 6.34 22.44 0.14 -2.54 16 23 Cl -0.08 -2.72 27.60 -2.72 -0.08 -2.79 16 24 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 25 H 0.10 4.60 4.73 -2.91 -0.01 4.59 16 26 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 27 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 28 H 0.12 4.24 6.89 -2.91 -0.02 4.22 16 29 H 0.40 17.83 7.13 -92.71 -0.66 17.17 16 30 H 0.13 4.62 5.47 -2.91 -0.02 4.60 16 31 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 32 H 0.40 4.57 8.84 -92.71 -0.82 3.75 16 33 H 0.41 4.42 8.84 -92.71 -0.82 3.60 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -61.20 298.21 2.24 -58.95 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -1.18 Total: 36.80 kcal Atomic # 6 Polarization: -51.09 SS G_CDS: 2.82 Total: -48.27 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -1.02 Total: -89.31 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.70 Total: 44.62 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.08 Total: -2.79 kcal Total: -61.20 2.24 -58.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249735686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.723 kcal (2) G-P(sol) polarization free energy of solvation -61.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds