Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00023 * 2 1 4 4 H 1.48504 * 109.46894 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47134 * 300.00036 * 3 2 1 6 6 H 1.48494 * 109.47329 * 60.00510 * 3 2 1 7 7 C 1.37876 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46803 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46799 * 179.97438 * 10 9 7 12 12 C 1.38391 * 119.85372 * 270.25251 * 11 10 9 13 13 C 1.37915 * 120.15404 * 180.30215 * 12 11 10 14 14 C 1.39647 * 119.84666 * 359.46896 * 13 12 11 15 15 C 1.47730 * 120.15362 * 180.23411 * 14 13 12 16 16 O 1.21467 * 120.00319 * 179.97438 * 15 14 13 17 17 O 1.34712 * 119.99320 * 0.02562 * 15 14 13 18 18 C 1.39610 * 119.70341 * 0.25156 * 14 13 12 19 19 C 1.50703 * 120.08025 * 180.02562 * 18 14 13 20 20 F 1.39899 * 109.47024 * 180.02562 * 19 18 14 21 21 F 1.39899 * 109.46829 * 300.00432 * 19 18 14 22 22 F 1.39896 * 109.46946 * 60.00359 * 19 18 14 23 23 C 1.37970 * 119.84452 * 0.02562 * 18 14 13 24 24 H 0.97000 * 119.99560 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46730 * 60.00228 * 9 7 2 26 26 H 1.09003 * 109.46809 * 300.00193 * 9 7 2 27 27 H 1.09003 * 109.47201 * 60.00185 * 10 9 7 28 28 H 1.08998 * 109.46956 * 299.99420 * 10 9 7 29 29 H 1.07998 * 119.92022 * 0.04565 * 12 11 10 30 30 H 1.08002 * 120.08024 * 179.75084 * 13 12 11 31 31 H 0.96706 * 116.99361 * 180.02562 * 17 15 14 32 32 H 1.07996 * 119.92627 * 179.97438 * 23 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 0.0001 12 6 1.1430 -5.5608 1.2006 13 6 0.4588 -6.7582 1.2085 14 6 0.1081 -7.3662 0.0012 15 6 -0.6293 -8.6463 0.0017 16 8 -0.9334 -9.1725 -1.0500 17 8 -0.9654 -9.2294 1.1687 18 6 0.4578 -6.7591 -1.2063 19 6 0.0831 -7.4075 -2.5141 20 9 0.5395 -6.6168 -3.5742 21 9 0.6706 -8.6747 -2.5914 22 9 -1.3081 -7.5329 -2.5906 23 6 1.1473 -5.5640 -1.1996 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8906 29 1 1.4110 -5.0873 2.1336 30 1 0.1908 -7.2224 2.1461 31 1 -1.4472 -10.0664 1.1184 32 1 1.4189 -5.0934 -2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = -229.087499 kcal Electronic energy + Delta-G solvation = -22680.510634 eV Core-core repulsion = 18576.635154 eV Total energy + Delta-G solvation = -4103.875480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.89316 -47.45069 -47.27586 -40.59652 -39.03991 -36.28339 -34.46525 -32.51425 -31.86066 -29.64350 -26.39784 -25.65323 -23.39304 -22.48552 -21.49779 -20.43139 -18.50234 -18.20587 -18.14758 -17.76469 -16.98365 -16.39766 -15.85142 -15.35440 -14.63255 -14.61512 -14.48292 -14.19121 -14.02724 -13.73954 -13.57648 -13.47183 -13.18425 -13.04252 -12.83051 -12.59605 -12.34373 -11.79689 -11.67427 -11.31110 -11.18877 -11.00120 -10.76532 -10.58909 -10.04896 -9.87097 -9.28176 -9.24829 -8.67910 -8.45979 -6.10261 -4.14371 0.43191 1.07245 2.42896 2.69892 2.88352 3.25512 3.33676 3.36699 3.52743 3.85690 4.18742 4.37855 4.63204 4.70960 4.85078 5.02833 5.24973 5.26084 5.28018 5.47892 5.73324 5.96196 6.05395 6.14285 6.26887 6.37941 6.57829 6.62128 6.84394 7.51922 7.60869 7.68397 7.87046 8.25761 8.92216 9.50908 11.00698 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.004012 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.791549 B = 6978.106102 C = 7544.758386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.088 4.088 11 C -0.016 4.016 12 C -0.107 4.107 13 C -0.057 4.057 14 C -0.109 4.109 15 C 0.522 3.478 16 O -0.500 6.500 17 O -0.508 6.508 18 C -0.123 4.123 19 C 0.515 3.485 20 F -0.180 7.180 21 F -0.170 7.170 22 F -0.168 7.168 23 C -0.086 4.086 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.415 0.585 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -16.893 1.502 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.125 4.125 11 C -0.017 4.017 12 C -0.124 4.124 13 C -0.075 4.075 14 C -0.110 4.110 15 C 0.366 3.634 16 O -0.389 6.389 17 O -0.320 6.320 18 C -0.124 4.124 19 C 0.460 3.540 20 F -0.162 7.162 21 F -0.151 7.151 22 F -0.149 7.149 23 C -0.103 4.103 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.039 0.961 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.274 0.726 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.370 -16.574 1.193 16.621 hybrid contribution -0.103 0.307 -0.250 0.409 sum 0.267 -16.267 0.944 16.296 Atomic orbital electron populations 1.69973 1.06102 1.26753 1.50292 1.25020 0.94847 0.99367 0.95071 0.86513 0.80086 0.83612 0.77669 1.19658 1.20945 1.20961 1.21222 0.93131 0.90680 1.51333 0.92349 1.19124 0.93553 0.90294 0.97887 1.21050 0.98650 0.90262 1.02540 1.20780 0.93287 0.95818 0.91772 1.21383 0.97531 0.94497 0.99028 1.21419 0.94710 0.94565 0.96792 1.18543 1.04465 0.94198 0.93819 1.20806 0.76652 0.84660 0.81291 1.90976 1.51562 1.63996 1.32376 1.84529 1.71210 1.41541 1.34745 1.20018 1.03471 0.97835 0.91117 1.17972 0.75388 0.76480 0.84130 1.93168 1.88950 1.74235 1.59803 1.93200 1.83901 1.41423 1.96600 1.93213 1.29317 1.95793 1.96571 1.21005 0.96503 0.92581 1.00258 0.92875 0.96152 0.96142 0.91085 0.91201 0.83990 0.83671 0.72647 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -13.93 9.11 -34.44 -0.31 -14.24 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.67 4.96 -27.88 -0.14 0.53 16 10 C -0.09 -1.57 5.27 -27.88 -0.15 -1.72 16 11 C -0.02 -0.26 5.14 -104.52 -0.54 -0.79 16 12 C -0.11 -1.42 9.68 -39.64 -0.38 -1.81 16 13 C -0.06 -0.69 9.62 -39.17 -0.38 -1.07 16 14 C -0.11 -1.52 5.85 -104.98 -0.61 -2.13 16 15 C 0.52 6.86 8.08 34.61 0.28 7.14 16 16 O -0.50 -7.78 12.09 -19.24 -0.23 -8.02 16 17 O -0.51 -4.70 12.68 -40.52 -0.51 -5.21 16 18 C -0.12 -1.87 5.40 -104.21 -0.56 -2.43 16 19 C 0.51 8.13 2.78 36.01 0.10 8.23 16 20 F -0.18 -2.77 15.98 2.25 0.04 -2.73 16 21 F -0.17 -2.73 15.01 2.25 0.03 -2.69 16 22 F -0.17 -2.84 15.02 2.25 0.03 -2.80 16 23 C -0.09 -1.31 9.07 -39.64 -0.36 -1.67 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 28 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 29 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.15 1.38 7.61 -52.49 -0.40 0.98 16 31 H 0.41 1.89 9.11 45.56 0.42 2.31 16 32 H 0.15 2.18 7.15 -52.49 -0.38 1.80 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -31.31 295.77 -5.63 -36.94 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -2.01 Total: -2.12 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -3.15 Total: -8.45 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.74 Total: -25.14 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.75 Total: -13.23 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.10 Total: -8.23 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.31 -5.63 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.149 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds