Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00023 * 2 1 4 4 H 1.48504 * 109.46894 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47134 * 300.00036 * 3 2 1 6 6 H 1.48494 * 109.47329 * 60.00510 * 3 2 1 7 7 C 1.37876 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46803 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46799 * 179.97438 * 10 9 7 12 12 C 1.38391 * 119.85372 * 270.25251 * 11 10 9 13 13 C 1.37915 * 120.15404 * 180.30215 * 12 11 10 14 14 C 1.39647 * 119.84666 * 359.46896 * 13 12 11 15 15 C 1.47730 * 120.15362 * 180.23411 * 14 13 12 16 16 O 1.21467 * 120.00319 * 179.97438 * 15 14 13 17 17 O 1.34712 * 119.99320 * 0.02562 * 15 14 13 18 18 C 1.39610 * 119.70341 * 0.25156 * 14 13 12 19 19 C 1.50703 * 120.08025 * 180.02562 * 18 14 13 20 20 F 1.39899 * 109.47024 * 180.02562 * 19 18 14 21 21 F 1.39899 * 109.46829 * 300.00432 * 19 18 14 22 22 F 1.39896 * 109.46946 * 60.00359 * 19 18 14 23 23 C 1.37970 * 119.84452 * 0.02562 * 18 14 13 24 24 H 0.97000 * 119.99560 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46730 * 60.00228 * 9 7 2 26 26 H 1.09003 * 109.46809 * 300.00193 * 9 7 2 27 27 H 1.09003 * 109.47201 * 60.00185 * 10 9 7 28 28 H 1.08998 * 109.46956 * 299.99420 * 10 9 7 29 29 H 1.07998 * 119.92022 * 0.04565 * 12 11 10 30 30 H 1.08002 * 120.08024 * 179.75084 * 13 12 11 31 31 H 0.96706 * 116.99361 * 180.02562 * 17 15 14 32 32 H 1.07996 * 119.92627 * 179.97438 * 23 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 0.0001 12 6 1.1430 -5.5608 1.2006 13 6 0.4588 -6.7582 1.2085 14 6 0.1081 -7.3662 0.0012 15 6 -0.6293 -8.6463 0.0017 16 8 -0.9334 -9.1725 -1.0500 17 8 -0.9654 -9.2294 1.1687 18 6 0.4578 -6.7591 -1.2063 19 6 0.0831 -7.4075 -2.5141 20 9 0.5395 -6.6168 -3.5742 21 9 0.6706 -8.6747 -2.5914 22 9 -1.3081 -7.5329 -2.5906 23 6 1.1473 -5.5640 -1.1996 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8906 29 1 1.4110 -5.0873 2.1336 30 1 0.1908 -7.2224 2.1461 31 1 -1.4472 -10.0664 1.1184 32 1 1.4189 -5.0934 -2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = -247.371835 kcal Electronic energy + Delta-G solvation = -22681.303502 eV Core-core repulsion = 18576.635154 eV Total energy + Delta-G solvation = -4104.668348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.14404 -48.69926 -48.54492 -41.61753 -40.12119 -37.19538 -36.08489 -34.24357 -32.97732 -31.20412 -27.71533 -27.17570 -24.80942 -23.58465 -22.89300 -21.77894 -19.64577 -19.46462 -19.16403 -18.97522 -18.44170 -18.00466 -16.84797 -16.51587 -16.50119 -15.72172 -15.69873 -15.43847 -15.26116 -14.98600 -14.76523 -14.74352 -14.58562 -14.46207 -14.21390 -13.95461 -13.72537 -13.37465 -12.86904 -12.77475 -12.56774 -12.42824 -12.35901 -11.80283 -11.72191 -11.61379 -11.18429 -10.54688 -10.35335 -9.95414 -8.18185 -6.29020 -0.67951 -0.01498 1.38048 1.42865 1.44654 1.56464 1.57419 1.89881 2.39951 2.45825 2.65109 3.00017 3.16511 3.39404 3.63985 3.80472 3.92413 4.13788 4.17837 4.38471 4.62002 4.76665 4.83132 4.92401 5.02264 5.14008 5.34572 5.47592 5.52760 5.59980 5.75815 5.86054 6.23539 6.86849 6.88712 7.40973 8.93442 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.004012 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.791549 B = 6978.106102 C = 7544.758386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.032 3.968 10 C -0.073 4.073 11 C -0.035 4.035 12 C -0.100 4.100 13 C -0.041 4.041 14 C -0.114 4.114 15 C 0.527 3.473 16 O -0.529 6.529 17 O -0.492 6.492 18 C -0.136 4.136 19 C 0.514 3.486 20 F -0.181 7.181 21 F -0.172 7.172 22 F -0.176 7.176 23 C -0.091 4.091 24 H 0.262 0.738 25 H -0.011 1.011 26 H 0.000 1.000 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.164 0.836 30 H 0.181 0.819 31 H 0.437 0.563 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -17.556 3.004 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.005 4.005 10 C -0.110 4.110 11 C -0.036 4.036 12 C -0.117 4.117 13 C -0.059 4.059 14 C -0.116 4.116 15 C 0.372 3.628 16 O -0.421 6.421 17 O -0.306 6.306 18 C -0.138 4.138 19 C 0.459 3.541 20 F -0.163 7.163 21 F -0.153 7.153 22 F -0.157 7.157 23 C -0.109 4.109 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.018 0.982 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.181 0.819 30 H 0.198 0.802 31 H 0.300 0.700 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.225 -17.267 2.716 17.522 hybrid contribution -0.415 0.410 -0.674 0.892 sum 0.811 -16.857 2.042 16.999 Atomic orbital electron populations 1.70105 1.07829 1.27646 1.51823 1.25927 0.95636 1.03248 0.94852 0.85447 0.79316 0.79061 0.77524 1.18264 1.20950 1.20554 1.21729 0.93803 0.91976 1.50223 0.91529 1.18972 0.94060 0.92108 0.95359 1.20748 0.97491 0.89354 1.03432 1.20588 0.94662 0.95437 0.92864 1.21654 0.96519 0.94630 0.98913 1.21738 0.93080 0.93667 0.97419 1.18832 1.04071 0.94718 0.93928 1.20657 0.76129 0.84320 0.81711 1.90974 1.52752 1.64696 1.33648 1.84469 1.70938 1.42764 1.32447 1.20012 1.04364 0.98055 0.91352 1.18078 0.74983 0.76456 0.84544 1.93161 1.88906 1.74232 1.59979 1.93187 1.83870 1.41628 1.96643 1.93188 1.30063 1.95852 1.96643 1.20990 0.96804 0.92843 1.00311 0.92883 0.99212 0.98156 0.89577 0.90952 0.81879 0.80213 0.70013 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.96 42.52 29.54 68.60 2.03 44.54 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.54 -28.62 9.11 25.60 0.23 -28.39 16 8 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.55 4.96 29.85 0.15 1.70 16 10 C -0.07 -2.58 5.27 29.85 0.16 -2.42 16 11 C -0.04 -1.07 5.14 -19.80 -0.10 -1.17 16 12 C -0.10 -2.42 9.68 22.23 0.22 -2.20 16 13 C -0.04 -0.88 9.62 22.53 0.22 -0.66 16 14 C -0.11 -2.97 5.85 -20.10 -0.12 -3.09 16 15 C 0.53 12.75 8.08 70.33 0.57 13.32 16 16 O -0.53 -15.87 12.09 19.94 0.24 -15.63 16 17 O -0.49 -7.42 12.68 -56.22 -0.71 -8.13 16 18 C -0.14 -4.08 5.40 -19.60 -0.11 -4.18 16 19 C 0.51 16.26 2.78 71.24 0.20 16.46 16 20 F -0.18 -5.66 15.98 44.97 0.72 -4.95 16 21 F -0.17 -5.49 15.01 44.97 0.68 -4.81 16 22 F -0.18 -5.99 15.02 44.97 0.68 -5.31 16 23 C -0.09 -2.80 9.07 22.23 0.20 -2.60 16 24 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.09 2.74 8.08 -2.39 -0.02 2.72 16 28 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 29 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.18 2.58 7.61 -2.91 -0.02 2.56 16 31 H 0.44 2.49 9.11 -74.05 -0.67 1.82 16 32 H 0.14 4.37 7.15 -2.91 -0.02 4.35 16 Total: -1.00 -67.86 295.77 6.49 -61.36 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: 0.51 Total: 0.48 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 2.08 Total: -12.73 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.28 Total: -54.82 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.47 Total: -23.76 kcal Atomic # 9 Polarization: -17.14 SS G_CDS: 2.07 Total: -15.07 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -67.86 6.49 -61.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.009 kcal (2) G-P(sol) polarization free energy of solvation -67.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds