Wall clock time and date at job start Tue Mar 31 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31836 * 119.67116 * 2 1 4 4 C 1.31949 * 121.79014 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 119.54387 * 180.02562 * 4 3 2 6 6 C 1.38439 * 120.90656 * 0.02609 * 4 3 2 7 7 C 1.38432 * 119.23735 * 359.70312 * 6 4 3 8 8 C 1.38906 * 119.66556 * 179.97438 * 2 1 3 9 9 N 1.39669 * 120.48054 * 359.97438 * 8 2 1 10 10 C 1.38668 * 119.99514 * 177.02498 * 9 8 2 11 11 C 1.38805 * 120.30296 * 317.86066 * 10 9 8 12 12 C 1.38118 * 120.02396 * 179.97438 * 11 10 9 13 13 C 1.38931 * 120.63166 * 0.02562 * 12 11 10 14 14 C 1.36430 * 120.61113 * 359.97438 * 13 12 11 15 15 C 1.40742 * 119.94830 * 0.02562 * 14 13 12 16 16 C 1.41007 * 120.30852 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00339 * 150.52552 * 16 15 14 18 18 C 1.39913 * 119.99841 * 330.53201 * 16 15 14 19 19 N 1.30887 * 120.00068 * 338.98132 * 18 16 15 20 20 Si 1.86798 * 119.99975 * 158.98393 * 18 16 15 21 21 H 1.48497 * 109.47462 * 89.99799 * 20 18 16 22 22 H 1.48501 * 109.47116 * 209.99782 * 20 18 16 23 23 H 1.48510 * 109.47126 * 329.99582 * 20 18 16 24 24 H 1.09006 * 109.47126 * 270.02250 * 1 2 3 25 25 H 1.09004 * 109.47186 * 30.01622 * 1 2 3 26 26 H 1.08996 * 109.47779 * 150.01793 * 1 2 3 27 27 H 1.07998 * 120.38318 * 179.97438 * 6 4 3 28 28 H 1.07999 * 120.81713 * 180.27243 * 7 6 4 29 29 H 0.96993 * 120.00073 * 357.02326 * 9 8 2 30 30 H 1.08004 * 119.99389 * 359.70390 * 11 10 9 31 31 H 1.07995 * 119.68611 * 179.97438 * 12 11 10 32 32 H 1.08008 * 119.69714 * 179.97438 * 13 12 11 33 33 H 1.07997 * 120.02467 * 179.97438 * 14 13 12 34 34 H 0.96999 * 120.00027 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1596 1.1455 0.0000 4 6 3.4781 1.1943 0.0005 5 17 4.2777 2.7352 0.0011 6 6 4.2327 0.0336 0.0005 7 6 3.5884 -1.1917 0.0062 8 6 2.1944 -1.2070 0.0005 9 7 1.4992 -2.4183 0.0016 10 6 2.1943 -3.6166 -0.0602 11 6 3.2767 -3.7550 -0.9180 12 6 3.9652 -4.9510 -0.9745 13 6 3.5855 -6.0247 -0.1789 14 6 2.5256 -5.9172 0.6734 15 6 1.8062 -4.7100 0.7512 16 6 0.7098 -4.5903 1.6298 17 1 0.4603 -3.6291 2.0542 18 6 -0.0547 -5.7169 1.9519 19 7 -0.0409 -6.7637 1.1663 20 14 -1.0952 -5.7272 3.5032 21 1 -2.4500 -5.2035 3.1942 22 1 -1.2066 -7.1166 4.0154 23 1 -0.4562 -4.8695 4.5336 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 5.3115 0.0834 0.0005 28 1 4.1518 -2.1130 0.0108 29 1 0.5303 -2.4214 0.0456 30 1 3.5780 -2.9286 -1.5447 31 1 4.8063 -5.0528 -1.6442 32 1 4.1344 -6.9532 -0.2355 33 1 2.2383 -6.7580 1.2873 34 1 -0.5712 -7.5446 1.3894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250156187.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:08 Heat of formation + Delta-G solvation = 45.638226 kcal Electronic energy + Delta-G solvation = -19722.372212 eV Core-core repulsion = 16645.268390 eV Total energy + Delta-G solvation = -3077.103822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.26110 -38.16082 -36.36422 -35.02338 -33.87254 -32.78208 -30.74586 -29.73490 -28.21015 -27.02809 -25.36787 -22.78191 -22.21505 -20.97920 -20.29217 -17.68215 -17.28311 -16.64494 -16.14780 -15.52937 -15.00671 -14.64522 -14.37948 -13.77863 -13.53407 -13.10078 -12.84808 -12.69571 -12.55635 -12.17293 -11.97668 -11.83823 -11.61514 -11.41995 -11.21764 -11.07639 -10.99466 -10.64273 -10.43623 -9.99237 -9.79283 -9.36435 -9.29155 -9.15317 -7.98839 -7.65698 -7.06859 -6.60576 -4.54489 1.37683 1.58339 2.21209 2.60411 2.75164 2.96315 2.98179 3.06668 3.77652 3.96192 4.05948 4.40556 4.69252 5.04396 5.23113 5.37153 5.43121 5.69113 5.76744 5.82159 5.97444 6.16842 6.17979 6.26757 6.34332 6.40695 6.70795 6.78956 6.89724 7.00066 7.16950 7.43703 7.50793 7.84554 7.92870 8.01997 8.15963 8.25703 8.44317 8.62271 8.75035 9.96116 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.004787 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.513928 B = 5848.174311 C = 6883.557900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.058 3.942 3 N -0.441 5.441 4 C 0.098 3.902 5 Cl -0.060 7.060 6 C -0.107 4.107 7 C -0.151 4.151 8 C 0.185 3.815 9 N -0.631 5.631 10 C 0.013 3.987 11 C -0.112 4.112 12 C -0.221 4.221 13 C -0.110 4.110 14 C -0.144 4.144 15 C 0.109 3.891 16 C -0.467 4.467 17 H 0.080 0.920 18 C 0.082 3.918 19 N -0.784 5.784 20 Si 0.903 3.097 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.260 1.260 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.157 0.843 29 H 0.407 0.593 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 6.993 -0.999 7.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 N -0.152 5.152 4 C -0.069 4.069 5 Cl -0.032 7.032 6 C -0.129 4.129 7 C -0.181 4.181 8 C 0.074 3.926 9 N -0.247 5.247 10 C -0.082 4.082 11 C -0.132 4.132 12 C -0.241 4.241 13 C -0.129 4.129 14 C -0.164 4.164 15 C 0.105 3.895 16 C -0.496 4.496 17 H 0.098 0.902 18 C -0.138 4.138 19 N -0.408 5.408 20 Si 0.727 3.273 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.183 1.183 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.154 0.846 28 H 0.174 0.826 29 H 0.246 0.754 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.236 7.489 -1.044 7.885 hybrid contribution -0.272 -0.780 0.678 1.069 sum 1.964 6.709 -0.366 7.000 Atomic orbital electron populations 1.20531 0.88774 1.02999 1.02877 1.20439 0.96289 0.85705 1.06261 1.66457 1.08558 1.29239 1.10900 1.20991 0.89555 0.86264 1.10053 1.98336 1.77355 1.30250 1.97298 1.21510 1.00803 0.90611 0.99937 1.21597 0.92850 0.98885 1.04734 1.18847 0.92399 0.87347 0.94015 1.41691 1.08350 1.00852 1.73842 1.17625 1.00658 0.87689 1.02204 1.20546 0.97606 0.97149 0.97917 1.20224 1.03739 0.94181 1.05978 1.20454 0.97766 0.96930 0.97781 1.20791 0.95609 0.98484 1.01499 1.17465 0.92427 0.90582 0.89038 1.19327 1.10645 0.95602 1.24011 0.90243 1.25874 0.96464 0.94649 0.96798 1.69842 1.32863 1.04805 1.33295 0.86386 0.80055 0.78744 0.82113 1.19342 1.19940 1.18349 0.90714 0.90555 0.91092 0.84563 0.82573 0.75433 0.88354 0.88900 0.89123 0.87069 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.72 36.00 0.35 -0.94 16 2 C 0.06 0.97 6.80 -82.35 -0.56 0.41 16 3 N -0.44 -7.64 10.25 -6.44 -0.07 -7.71 16 4 C 0.10 1.59 7.27 -17.43 -0.13 1.46 16 5 Cl -0.06 -0.85 29.10 -51.86 -1.51 -2.36 16 6 C -0.11 -1.64 9.87 -39.44 -0.39 -2.03 16 7 C -0.15 -2.57 8.17 -39.08 -0.32 -2.89 16 8 C 0.18 3.28 6.47 -83.61 -0.54 2.74 16 9 N -0.63 -11.98 4.80 -7.94 -0.04 -12.02 16 10 C 0.01 0.29 5.99 -83.29 -0.50 -0.21 16 11 C -0.11 -2.27 7.32 -39.42 -0.29 -2.56 16 12 C -0.22 -4.46 10.03 -39.37 -0.40 -4.86 16 13 C -0.11 -2.35 9.96 -39.98 -0.40 -2.75 16 14 C -0.14 -3.38 8.63 -39.29 -0.34 -3.72 16 15 C 0.11 2.59 5.51 -106.63 -0.59 2.00 16 16 C -0.47 -11.07 8.35 -37.91 -0.32 -11.38 16 17 H 0.08 1.83 7.64 -52.49 -0.40 1.43 16 18 C 0.08 1.87 5.02 -17.33 -0.09 1.79 16 19 N -0.78 -18.60 11.51 55.55 0.64 -17.96 16 20 Si 0.90 17.29 29.61 -169.99 -5.03 12.25 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.91 6.59 -51.93 -0.34 0.57 16 27 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.16 2.72 5.17 -52.49 -0.27 2.45 16 29 H 0.41 7.37 6.40 -40.82 -0.26 7.11 16 30 H 0.10 1.83 6.48 -52.48 -0.34 1.49 16 31 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.11 2.70 6.65 -52.49 -0.35 2.35 16 34 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 LS Contribution 303.38 15.07 4.57 4.57 Total: -1.00 -24.99 303.38 -9.14 -34.14 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -3.21 Total: 12.02 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -4.50 Total: -22.93 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.54 Total: -37.69 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.51 Total: -2.36 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -24.99 -9.14 -34.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250156187.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.778 kcal (2) G-P(sol) polarization free energy of solvation -24.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds