Wall clock time and date at job start Tue Mar 31 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31836 * 119.67116 * 2 1 4 4 C 1.31949 * 121.79014 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 119.54387 * 180.02562 * 4 3 2 6 6 C 1.38439 * 120.90656 * 0.02609 * 4 3 2 7 7 C 1.38432 * 119.23735 * 359.70312 * 6 4 3 8 8 C 1.38906 * 119.66556 * 179.97438 * 2 1 3 9 9 N 1.39669 * 120.48054 * 359.97438 * 8 2 1 10 10 C 1.38668 * 119.99514 * 177.02498 * 9 8 2 11 11 C 1.38805 * 120.30296 * 317.86066 * 10 9 8 12 12 C 1.38118 * 120.02396 * 179.97438 * 11 10 9 13 13 C 1.38931 * 120.63166 * 0.02562 * 12 11 10 14 14 C 1.36430 * 120.61113 * 359.97438 * 13 12 11 15 15 C 1.40742 * 119.94830 * 0.02562 * 14 13 12 16 16 C 1.41007 * 120.30852 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00339 * 150.52552 * 16 15 14 18 18 C 1.39913 * 119.99841 * 330.53201 * 16 15 14 19 19 N 1.30887 * 120.00068 * 338.98132 * 18 16 15 20 20 Si 1.86798 * 119.99975 * 158.98393 * 18 16 15 21 21 H 1.48497 * 109.47462 * 89.99799 * 20 18 16 22 22 H 1.48501 * 109.47116 * 209.99782 * 20 18 16 23 23 H 1.48510 * 109.47126 * 329.99582 * 20 18 16 24 24 H 1.09006 * 109.47126 * 270.02250 * 1 2 3 25 25 H 1.09004 * 109.47186 * 30.01622 * 1 2 3 26 26 H 1.08996 * 109.47779 * 150.01793 * 1 2 3 27 27 H 1.07998 * 120.38318 * 179.97438 * 6 4 3 28 28 H 1.07999 * 120.81713 * 180.27243 * 7 6 4 29 29 H 0.96993 * 120.00073 * 357.02326 * 9 8 2 30 30 H 1.08004 * 119.99389 * 359.70390 * 11 10 9 31 31 H 1.07995 * 119.68611 * 179.97438 * 12 11 10 32 32 H 1.08008 * 119.69714 * 179.97438 * 13 12 11 33 33 H 1.07997 * 120.02467 * 179.97438 * 14 13 12 34 34 H 0.96999 * 120.00027 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1596 1.1455 0.0000 4 6 3.4781 1.1943 0.0005 5 17 4.2777 2.7352 0.0011 6 6 4.2327 0.0336 0.0005 7 6 3.5884 -1.1917 0.0062 8 6 2.1944 -1.2070 0.0005 9 7 1.4992 -2.4183 0.0016 10 6 2.1943 -3.6166 -0.0602 11 6 3.2767 -3.7550 -0.9180 12 6 3.9652 -4.9510 -0.9745 13 6 3.5855 -6.0247 -0.1789 14 6 2.5256 -5.9172 0.6734 15 6 1.8062 -4.7100 0.7512 16 6 0.7098 -4.5903 1.6298 17 1 0.4603 -3.6291 2.0542 18 6 -0.0547 -5.7169 1.9519 19 7 -0.0409 -6.7637 1.1663 20 14 -1.0952 -5.7272 3.5032 21 1 -2.4500 -5.2035 3.1942 22 1 -1.2066 -7.1166 4.0154 23 1 -0.4562 -4.8695 4.5336 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8899 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 5.3115 0.0834 0.0005 28 1 4.1518 -2.1130 0.0108 29 1 0.5303 -2.4214 0.0456 30 1 3.5780 -2.9286 -1.5447 31 1 4.8063 -5.0528 -1.6442 32 1 4.1344 -6.9532 -0.2355 33 1 2.2383 -6.7580 1.2873 34 1 -0.5712 -7.5446 1.3894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250156187.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:07 Heat of formation + Delta-G solvation = 34.617795 kcal Electronic energy + Delta-G solvation = -19722.850094 eV Core-core repulsion = 16645.268390 eV Total energy + Delta-G solvation = -3077.581704 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.60896 -39.72389 -37.60860 -36.47637 -35.54207 -34.04320 -32.22454 -31.34480 -29.70250 -28.29954 -27.05217 -24.18092 -23.61834 -22.51371 -21.86362 -19.27296 -18.77502 -18.07469 -17.47008 -17.10614 -16.48867 -15.98613 -15.91677 -15.25513 -14.89711 -14.57031 -14.35950 -14.11279 -13.83019 -13.61705 -13.29144 -13.13100 -13.05037 -13.01457 -12.75160 -12.52467 -12.19300 -12.17006 -11.86577 -11.62527 -11.36280 -11.02381 -10.61971 -10.48599 -9.50293 -9.35700 -8.73653 -8.12001 -6.29175 0.08329 0.24021 0.95443 0.98100 1.10790 1.39296 1.46720 1.53280 2.18967 2.54958 2.69805 2.74898 3.48421 3.65081 3.78679 3.97733 4.12247 4.39446 4.52441 4.56894 4.62050 4.74174 4.78258 4.96905 5.04921 5.10276 5.13284 5.20178 5.30626 5.39973 5.58980 5.80888 5.86091 6.15811 6.25707 6.40211 6.68000 6.80621 6.84559 6.93673 7.08226 8.30391 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.004787 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.513928 B = 5848.174311 C = 6883.557900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.058 3.942 3 N -0.457 5.457 4 C 0.093 3.907 5 Cl -0.040 7.040 6 C -0.101 4.101 7 C -0.157 4.157 8 C 0.167 3.833 9 N -0.636 5.636 10 C 0.019 3.981 11 C -0.116 4.116 12 C -0.215 4.215 13 C -0.118 4.118 14 C -0.168 4.168 15 C 0.077 3.923 16 C -0.493 4.493 17 H 0.076 0.924 18 C 0.047 3.953 19 N -0.819 5.819 20 Si 0.968 3.032 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.265 1.265 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.166 0.834 28 H 0.153 0.847 29 H 0.408 0.592 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 8.330 -1.280 9.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 N -0.168 5.168 4 C -0.073 4.073 5 Cl -0.012 7.012 6 C -0.122 4.122 7 C -0.186 4.186 8 C 0.058 3.942 9 N -0.255 5.255 10 C -0.077 4.077 11 C -0.136 4.136 12 C -0.234 4.234 13 C -0.136 4.136 14 C -0.188 4.188 15 C 0.073 3.927 16 C -0.522 4.522 17 H 0.094 0.906 18 C -0.169 4.169 19 N -0.444 5.444 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.189 1.189 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.183 0.817 28 H 0.170 0.830 29 H 0.247 0.753 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.945 8.863 -1.334 9.434 hybrid contribution -0.329 -1.017 0.673 1.263 sum 2.615 7.846 -0.661 8.297 Atomic orbital electron populations 1.20604 0.87011 1.03844 1.03638 1.20822 0.97577 0.85225 1.05047 1.66567 1.09221 1.29357 1.11668 1.21358 0.89585 0.87503 1.08886 1.98344 1.76835 1.28918 1.97143 1.21762 1.02226 0.89582 0.98672 1.21676 0.92655 0.99465 1.04831 1.19011 0.92888 0.87163 0.95102 1.41572 1.08322 1.00563 1.75007 1.17776 1.00627 0.88001 1.01314 1.20780 0.97238 0.97877 0.97733 1.20603 1.03995 0.93483 1.05330 1.20708 0.97257 0.98314 0.97369 1.20776 0.97041 0.98268 1.02741 1.17774 0.93153 0.91657 0.90069 1.19453 1.11529 0.95968 1.25284 0.90601 1.26542 0.97290 0.94110 0.98985 1.69886 1.34209 1.05533 1.34767 0.85414 0.78625 0.78613 0.78413 1.18565 1.19477 1.18873 0.89937 0.89349 0.90552 0.81658 0.82979 0.75313 0.86518 0.85873 0.87083 0.88953 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.45 9.72 71.23 0.69 -1.75 16 2 C 0.06 1.86 6.80 42.72 0.29 2.15 16 3 N -0.46 -15.02 10.25 -174.30 -1.79 -16.80 16 4 C 0.09 2.81 7.27 84.72 0.62 3.43 16 5 Cl -0.04 -1.04 29.10 -2.72 -0.08 -1.12 16 6 C -0.10 -2.86 9.87 22.36 0.22 -2.64 16 7 C -0.16 -5.08 8.17 22.60 0.18 -4.90 16 8 C 0.17 5.78 6.47 38.33 0.25 6.02 16 9 N -0.64 -24.08 4.80 -179.03 -0.86 -24.94 16 10 C 0.02 0.80 5.99 39.02 0.23 1.03 16 11 C -0.12 -4.55 7.32 22.38 0.16 -4.39 16 12 C -0.21 -8.26 10.03 22.41 0.22 -8.04 16 13 C -0.12 -4.95 9.96 22.01 0.22 -4.73 16 14 C -0.17 -8.10 8.63 22.46 0.19 -7.91 16 15 C 0.08 3.77 5.51 -21.17 -0.12 3.65 16 16 C -0.49 -24.04 8.35 23.35 0.20 -23.85 16 17 H 0.08 3.60 7.64 -2.91 -0.02 3.58 16 18 C 0.05 2.21 5.02 85.24 0.43 2.63 16 19 N -0.82 -40.01 11.51 21.82 0.25 -39.76 16 20 Si 0.97 36.03 29.61 68.60 2.03 38.06 16 21 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 22 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 24 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.08 1.90 6.59 -2.39 -0.02 1.89 16 27 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 28 H 0.15 5.06 5.17 -2.91 -0.02 5.04 16 29 H 0.41 14.90 6.40 -92.71 -0.59 14.31 16 30 H 0.12 4.10 6.48 -2.91 -0.02 4.09 16 31 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 33 H 0.09 4.69 6.65 -2.91 -0.02 4.67 16 34 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 Total: -1.00 -53.30 303.38 3.91 -49.39 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.56 Total: 34.44 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 3.79 Total: -39.27 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -2.39 Total: -81.50 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -53.30 3.91 -49.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250156187.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.004 kcal (2) G-P(sol) polarization free energy of solvation -53.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds