Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31851 * 119.65849 * 2 1 4 4 C 1.31940 * 121.77650 * 179.97438 * 3 2 1 5 5 Cl 1.73610 * 119.54841 * 179.97438 * 4 3 2 6 6 C 1.38429 * 120.90321 * 359.97438 * 4 3 2 7 7 C 1.38450 * 119.22449 * 359.76697 * 6 4 3 8 8 C 1.38846 * 119.66458 * 180.02562 * 2 1 3 9 9 N 1.39803 * 120.47853 * 359.97438 * 8 2 1 10 10 C 1.39720 * 120.00249 * 76.46555 * 9 8 2 11 11 C 1.39354 * 119.94924 * 6.93821 * 10 9 8 12 12 C 1.38472 * 120.42243 * 180.02562 * 11 10 9 13 13 C 1.37694 * 120.32462 * 359.97438 * 12 11 10 14 14 C 1.40755 * 119.89989 * 359.97438 * 13 12 11 15 15 C 1.41400 * 120.20997 * 180.29770 * 14 13 12 16 16 H 1.08005 * 120.00293 * 150.86059 * 15 14 13 17 17 C 1.39926 * 119.99834 * 330.85752 * 15 14 13 18 18 N 1.30837 * 120.00247 * 165.19698 * 17 15 14 19 19 Si 1.86804 * 119.99927 * 345.19359 * 17 15 14 20 20 H 1.48501 * 109.46849 * 92.03512 * 19 17 15 21 21 H 1.48505 * 109.47125 * 212.03386 * 19 17 15 22 22 H 1.48493 * 109.47061 * 332.03414 * 19 17 15 23 23 C 1.38293 * 119.95330 * 186.91298 * 10 9 8 24 24 H 1.09001 * 109.46828 * 269.97590 * 1 2 3 25 25 H 1.09000 * 109.47025 * 29.98070 * 1 2 3 26 26 H 1.09000 * 109.46924 * 149.98438 * 1 2 3 27 27 H 1.07993 * 120.38754 * 180.02562 * 6 4 3 28 28 H 1.08000 * 120.81281 * 180.25927 * 7 6 4 29 29 H 0.97004 * 120.00333 * 256.46682 * 9 8 2 30 30 H 1.08006 * 119.78936 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.83309 * 180.02562 * 12 11 10 32 32 H 1.08002 * 120.04836 * 180.02562 * 13 12 11 33 33 H 0.97003 * 120.00141 * 180.02562 * 18 17 15 34 34 H 1.07994 * 120.16645 * 0.02700 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1458 0.0000 4 6 3.4780 1.1945 0.0005 5 17 4.2778 2.7355 -0.0002 6 6 4.2323 0.0339 0.0016 7 6 3.5876 -1.1914 0.0071 8 6 2.1942 -1.2065 -0.0005 9 7 1.4982 -2.4190 -0.0005 10 6 0.9044 -2.8836 -1.1768 11 6 1.1265 -2.2154 -2.3793 12 6 0.5425 -2.6671 -3.5508 13 6 -0.2644 -3.7828 -3.5401 14 6 -0.4972 -4.4688 -2.3333 15 6 -1.3196 -5.6189 -2.3158 16 1 -1.1491 -6.3938 -1.5830 17 6 -2.3546 -5.7531 -3.2480 18 7 -2.9249 -6.9165 -3.4294 19 14 -2.9220 -4.2710 -4.2334 20 1 -2.1704 -4.2100 -5.5127 21 1 -4.3745 -4.3923 -4.5178 22 1 -2.6722 -3.0326 -3.4530 23 6 0.0974 -4.0063 -1.1461 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8899 -0.5141 27 1 5.3111 0.0835 0.0024 28 1 4.1508 -2.1129 0.0122 29 1 1.4276 -2.9377 0.8161 30 1 1.7583 -1.3396 -2.3977 31 1 0.7214 -2.1422 -4.4775 32 1 -0.7174 -4.1314 -4.4564 33 1 -3.6421 -7.0096 -4.0758 34 1 -0.0755 -4.5250 -0.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250159803.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = 49.959676 kcal Electronic energy + Delta-G solvation = -19512.946469 eV Core-core repulsion = 16436.030038 eV Total energy + Delta-G solvation = -3076.916430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61940 -38.19139 -36.80164 -35.41229 -33.39114 -33.11041 -30.95309 -30.31042 -28.48785 -26.90275 -25.17959 -23.24304 -22.33655 -21.27533 -20.47430 -17.79413 -17.17902 -16.94290 -16.42068 -16.08286 -15.23595 -14.71672 -14.42722 -14.05000 -13.57625 -13.32837 -12.95462 -12.77469 -12.66745 -12.59174 -12.23999 -11.92008 -11.69791 -11.44318 -11.39888 -11.09669 -10.98915 -10.54942 -10.00557 -9.90829 -9.82513 -9.61388 -9.37018 -9.08976 -8.65381 -7.72675 -6.95791 -6.75669 -4.54599 0.80386 1.07106 1.70043 2.59569 2.73249 3.12254 3.23003 3.32891 3.47659 3.73264 3.98123 4.30369 4.49380 4.68483 4.82978 5.00276 5.38467 5.44202 5.58196 5.72893 5.80824 5.92838 6.07111 6.12772 6.19856 6.38128 6.48478 6.66610 6.72982 6.87270 7.16777 7.43437 7.54138 7.64783 7.68053 7.87483 8.18626 8.21850 8.36092 8.64100 8.79906 10.06605 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034948 B = 0.003747 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.007691 B = 7471.018406 C = 7692.085063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.148 3.852 3 N -0.474 5.474 4 C 0.167 3.833 5 Cl -0.041 7.041 6 C -0.154 4.154 7 C -0.073 4.073 8 C 0.131 3.869 9 N -0.709 5.709 10 C 0.226 3.774 11 C -0.291 4.291 12 C -0.046 4.046 13 C -0.268 4.268 14 C 0.123 3.877 15 C -0.445 4.445 16 H 0.090 0.910 17 C 0.083 3.917 18 N -0.811 5.811 19 Si 0.919 3.081 20 H -0.271 1.271 21 H -0.295 1.295 22 H -0.244 1.244 23 C -0.265 4.265 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.404 0.596 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.285 0.715 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.777 11.861 6.263 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.008 3.992 3 N -0.186 5.186 4 C 0.003 3.997 5 Cl -0.013 7.013 6 C -0.175 4.175 7 C -0.101 4.101 8 C 0.034 3.966 9 N -0.341 5.341 10 C 0.130 3.870 11 C -0.313 4.313 12 C -0.065 4.065 13 C -0.288 4.288 14 C 0.119 3.881 15 C -0.474 4.474 16 H 0.108 0.892 17 C -0.136 4.136 18 N -0.436 5.436 19 Si 0.747 3.253 20 H -0.198 1.198 21 H -0.223 1.223 22 H -0.167 1.167 23 C -0.289 4.289 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.242 0.758 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.228 12.671 6.097 16.819 hybrid contribution 0.348 -0.279 -0.259 0.516 sum 9.576 12.392 5.838 16.713 Atomic orbital electron populations 1.20785 0.87714 1.04733 1.03096 1.21686 0.97435 0.86449 0.93647 1.66811 1.08156 1.29961 1.13651 1.21535 0.89967 0.87159 1.01082 1.98389 1.76959 1.29288 1.96631 1.21688 1.01444 0.90735 1.03648 1.22003 0.94158 0.98185 0.95706 1.18293 0.90584 0.87682 1.00027 1.41782 1.60476 1.20779 1.11090 1.17476 0.91894 0.93352 0.84245 1.19881 1.13658 1.05643 0.92124 1.20356 0.95321 0.95002 0.95854 1.20976 1.08541 1.01803 0.97520 1.17444 0.89965 0.90630 0.90025 1.19490 1.11440 1.02781 1.13669 0.89236 1.26179 0.95460 0.97030 0.94883 1.69675 1.20242 1.24383 1.29256 0.86239 0.75838 0.83057 0.80188 1.19776 1.22308 1.16704 1.20412 1.09707 1.00820 0.97953 0.90432 0.90586 0.88759 0.83861 0.83597 0.75838 0.89405 0.88871 0.88274 0.90430 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.93 36.01 0.36 -1.14 16 2 C 0.15 2.19 6.48 -82.36 -0.53 1.66 16 3 N -0.47 -7.09 10.25 -6.45 -0.07 -7.16 16 4 C 0.17 2.20 7.27 -17.43 -0.13 2.07 16 5 Cl -0.04 -0.47 29.10 -51.86 -1.51 -1.98 16 6 C -0.15 -1.74 9.87 -39.43 -0.39 -2.13 16 7 C -0.07 -0.89 10.11 -39.09 -0.40 -1.28 16 8 C 0.13 1.87 4.49 -83.58 -0.38 1.49 16 9 N -0.71 -10.79 4.85 -8.35 -0.04 -10.83 16 10 C 0.23 4.36 5.14 -83.83 -0.43 3.92 16 11 C -0.29 -5.86 8.92 -39.08 -0.35 -6.21 16 12 C -0.05 -0.99 10.02 -39.69 -0.40 -1.39 16 13 C -0.27 -6.33 7.11 -38.83 -0.28 -6.61 16 14 C 0.12 3.01 5.16 -106.85 -0.55 2.46 16 15 C -0.45 -11.74 9.60 -37.75 -0.36 -12.10 16 16 H 0.09 2.47 8.06 -52.48 -0.42 2.04 16 17 C 0.08 2.15 5.45 -17.34 -0.09 2.05 16 18 N -0.81 -21.36 13.93 55.55 0.77 -20.59 16 19 Si 0.92 20.72 24.41 -169.99 -4.15 16.57 16 20 H -0.27 -5.97 6.58 56.52 0.37 -5.60 16 21 H -0.30 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.24 -5.59 6.79 56.52 0.38 -5.21 16 23 C -0.27 -5.76 9.64 -38.67 -0.37 -6.14 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.53 5.87 -51.93 -0.30 1.22 16 27 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.40 5.33 8.84 -40.82 -0.36 4.97 16 30 H 0.09 1.70 6.83 -52.48 -0.36 1.34 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.10 2.36 4.27 -52.49 -0.22 2.14 16 33 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 34 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -27.27 302.85 -8.11 -35.38 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -3.39 Total: 7.38 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -4.30 Total: -23.33 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.67 Total: -38.58 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.15 Total: 16.57 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.51 Total: -1.98 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.27 -8.11 -35.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250159803.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.340 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds