Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31851 * 119.65849 * 2 1 4 4 C 1.31940 * 121.77650 * 179.97438 * 3 2 1 5 5 Cl 1.73610 * 119.54841 * 179.97438 * 4 3 2 6 6 C 1.38429 * 120.90321 * 359.97438 * 4 3 2 7 7 C 1.38450 * 119.22449 * 359.76697 * 6 4 3 8 8 C 1.38846 * 119.66458 * 180.02562 * 2 1 3 9 9 N 1.39803 * 120.47853 * 359.97438 * 8 2 1 10 10 C 1.39720 * 120.00249 * 76.46555 * 9 8 2 11 11 C 1.39354 * 119.94924 * 6.93821 * 10 9 8 12 12 C 1.38472 * 120.42243 * 180.02562 * 11 10 9 13 13 C 1.37694 * 120.32462 * 359.97438 * 12 11 10 14 14 C 1.40755 * 119.89989 * 359.97438 * 13 12 11 15 15 C 1.41400 * 120.20997 * 180.29770 * 14 13 12 16 16 H 1.08005 * 120.00293 * 150.86059 * 15 14 13 17 17 C 1.39926 * 119.99834 * 330.85752 * 15 14 13 18 18 N 1.30837 * 120.00247 * 165.19698 * 17 15 14 19 19 Si 1.86804 * 119.99927 * 345.19359 * 17 15 14 20 20 H 1.48501 * 109.46849 * 92.03512 * 19 17 15 21 21 H 1.48505 * 109.47125 * 212.03386 * 19 17 15 22 22 H 1.48493 * 109.47061 * 332.03414 * 19 17 15 23 23 C 1.38293 * 119.95330 * 186.91298 * 10 9 8 24 24 H 1.09001 * 109.46828 * 269.97590 * 1 2 3 25 25 H 1.09000 * 109.47025 * 29.98070 * 1 2 3 26 26 H 1.09000 * 109.46924 * 149.98438 * 1 2 3 27 27 H 1.07993 * 120.38754 * 180.02562 * 6 4 3 28 28 H 1.08000 * 120.81281 * 180.25927 * 7 6 4 29 29 H 0.97004 * 120.00333 * 256.46682 * 9 8 2 30 30 H 1.08006 * 119.78936 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.83309 * 180.02562 * 12 11 10 32 32 H 1.08002 * 120.04836 * 180.02562 * 13 12 11 33 33 H 0.97003 * 120.00141 * 180.02562 * 18 17 15 34 34 H 1.07994 * 120.16645 * 0.02700 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1458 0.0000 4 6 3.4780 1.1945 0.0005 5 17 4.2778 2.7355 -0.0002 6 6 4.2323 0.0339 0.0016 7 6 3.5876 -1.1914 0.0071 8 6 2.1942 -1.2065 -0.0005 9 7 1.4982 -2.4190 -0.0005 10 6 0.9044 -2.8836 -1.1768 11 6 1.1265 -2.2154 -2.3793 12 6 0.5425 -2.6671 -3.5508 13 6 -0.2644 -3.7828 -3.5401 14 6 -0.4972 -4.4688 -2.3333 15 6 -1.3196 -5.6189 -2.3158 16 1 -1.1491 -6.3938 -1.5830 17 6 -2.3546 -5.7531 -3.2480 18 7 -2.9249 -6.9165 -3.4294 19 14 -2.9220 -4.2710 -4.2334 20 1 -2.1704 -4.2100 -5.5127 21 1 -4.3745 -4.3923 -4.5178 22 1 -2.6722 -3.0326 -3.4530 23 6 0.0974 -4.0063 -1.1461 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8899 -0.5141 27 1 5.3111 0.0835 0.0024 28 1 4.1508 -2.1129 0.0122 29 1 1.4276 -2.9377 0.8161 30 1 1.7583 -1.3396 -2.3977 31 1 0.7214 -2.1422 -4.4775 32 1 -0.7174 -4.1314 -4.4564 33 1 -3.6421 -7.0096 -4.0758 34 1 -0.0755 -4.5250 -0.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250159803.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = 34.716336 kcal Electronic energy + Delta-G solvation = -19513.607470 eV Core-core repulsion = 16436.030038 eV Total energy + Delta-G solvation = -3077.577431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71377 -39.76224 -37.82077 -36.81196 -35.17336 -34.13202 -32.24436 -32.09880 -29.84898 -28.09055 -27.01004 -24.39959 -23.43309 -22.90472 -22.11809 -19.48467 -18.30625 -18.06357 -17.80897 -17.50977 -16.82904 -16.40100 -15.65354 -15.37385 -14.90827 -14.46789 -14.39877 -14.32454 -14.15312 -13.85574 -13.62266 -13.35984 -13.13350 -12.86174 -12.71486 -12.45694 -12.34659 -12.30828 -11.61453 -11.43003 -11.33661 -11.00973 -10.90400 -10.51651 -9.75147 -9.51721 -8.86317 -8.28282 -6.50494 -0.23803 0.07920 0.73820 0.83561 1.02126 1.30806 1.44985 1.53527 2.15818 2.37320 2.54616 2.66615 3.28169 3.57492 3.67670 3.86663 4.07143 4.30904 4.44176 4.53184 4.55008 4.66438 4.67719 4.77574 4.96230 5.00558 5.05095 5.09679 5.16795 5.37420 5.47832 5.75099 5.82633 5.94983 6.05935 6.36989 6.59084 6.62881 6.79343 6.85963 6.97393 8.21990 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034948 B = 0.003747 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.007691 B = 7471.018406 C = 7692.085063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.136 3.864 3 N -0.494 5.494 4 C 0.158 3.842 5 Cl -0.028 7.028 6 C -0.141 4.141 7 C -0.064 4.064 8 C 0.109 3.891 9 N -0.695 5.695 10 C 0.245 3.755 11 C -0.277 4.277 12 C -0.049 4.049 13 C -0.289 4.289 14 C 0.108 3.892 15 C -0.481 4.481 16 H 0.057 0.943 17 C 0.047 3.953 18 N -0.854 5.854 19 Si 0.971 3.029 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.251 1.251 23 C -0.275 4.275 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.177 0.823 28 H 0.168 0.832 29 H 0.415 0.585 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.292 0.708 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.030 14.412 6.477 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.003 4.003 3 N -0.207 5.207 4 C -0.007 4.007 5 Cl 0.000 7.000 6 C -0.162 4.162 7 C -0.091 4.091 8 C 0.013 3.987 9 N -0.326 5.326 10 C 0.147 3.853 11 C -0.300 4.300 12 C -0.067 4.067 13 C -0.309 4.309 14 C 0.104 3.896 15 C -0.511 4.511 16 H 0.075 0.925 17 C -0.167 4.167 18 N -0.481 5.481 19 Si 0.796 3.204 20 H -0.188 1.188 21 H -0.211 1.211 22 H -0.175 1.175 23 C -0.299 4.299 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.195 0.805 28 H 0.186 0.814 29 H 0.254 0.746 30 H 0.122 0.878 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.506 15.238 6.347 20.121 hybrid contribution -0.075 -0.838 -0.161 0.857 sum 11.431 14.400 6.185 19.398 Atomic orbital electron populations 1.20720 0.87918 1.03624 1.03763 1.21687 0.97561 0.86761 0.94319 1.66792 1.09278 1.30087 1.14544 1.21900 0.89762 0.88418 1.00590 1.98397 1.76465 1.28603 1.96508 1.22017 1.03003 0.89562 1.01648 1.22227 0.93176 0.99506 0.94208 1.18400 0.91501 0.86717 1.02070 1.41625 1.59600 1.21181 1.10188 1.17385 0.90428 0.91905 0.85619 1.20129 1.12506 1.05436 0.91893 1.20672 0.94267 0.94262 0.97521 1.21017 1.09928 1.02978 0.96943 1.17576 0.90100 0.90420 0.91470 1.19488 1.13618 1.03591 1.14374 0.92455 1.26804 0.95200 0.99057 0.95600 1.69709 1.21660 1.25759 1.30967 0.85437 0.76013 0.79804 0.79137 1.18794 1.21141 1.17473 1.20508 1.10116 1.01814 0.97483 0.89039 0.90442 0.90931 0.80526 0.81417 0.74603 0.87824 0.86189 0.88869 0.89718 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.74 9.93 71.24 0.71 -2.04 16 2 C 0.14 3.70 6.48 42.70 0.28 3.98 16 3 N -0.49 -13.50 10.25 -174.33 -1.79 -15.29 16 4 C 0.16 3.62 7.27 84.72 0.62 4.24 16 5 Cl -0.03 -0.56 29.10 -2.72 -0.08 -0.64 16 6 C -0.14 -2.59 9.87 22.37 0.22 -2.37 16 7 C -0.06 -1.29 10.11 22.59 0.23 -1.06 16 8 C 0.11 2.77 4.49 38.28 0.17 2.94 16 9 N -0.69 -19.37 4.85 -180.33 -0.87 -20.25 16 10 C 0.25 8.97 5.14 38.17 0.20 9.17 16 11 C -0.28 -10.40 8.92 22.59 0.20 -10.20 16 12 C -0.05 -1.96 10.02 22.20 0.22 -1.74 16 13 C -0.29 -13.46 7.11 22.76 0.16 -13.30 16 14 C 0.11 5.35 5.16 -21.31 -0.11 5.24 16 15 C -0.48 -26.62 9.60 23.46 0.23 -26.39 16 16 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 17 C 0.05 2.54 5.45 85.25 0.46 3.00 16 18 N -0.85 -46.93 13.93 21.82 0.30 -46.63 16 19 Si 0.97 43.31 24.41 68.60 1.67 44.98 16 20 H -0.26 -11.16 6.58 99.48 0.65 -10.50 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.25 -11.34 6.79 99.48 0.68 -10.66 16 23 C -0.28 -11.91 9.64 22.86 0.22 -11.69 16 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.07 2.24 5.87 -2.39 -0.01 2.23 16 27 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.42 9.97 8.84 -92.71 -0.82 9.15 16 30 H 0.10 3.62 6.83 -2.91 -0.02 3.60 16 31 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.09 4.41 4.27 -2.91 -0.01 4.40 16 33 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 34 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -60.06 302.85 3.29 -56.77 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.25 Total: 21.26 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 3.80 Total: -40.21 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.36 Total: -82.17 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.67 Total: 44.98 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -60.06 3.29 -56.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250159803.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.491 kcal (2) G-P(sol) polarization free energy of solvation -60.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds