Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 H 1.08003 * 120.00271 * 119.99914 * 4 2 1 6 6 C 1.37886 * 119.99979 * 300.00171 * 4 2 1 7 7 N 1.31509 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99822 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46876 * 89.99887 * 8 6 4 10 10 H 1.48493 * 109.46859 * 209.99545 * 8 6 4 11 11 H 1.48500 * 109.47229 * 330.00047 * 8 6 4 12 12 O 1.45194 * 109.47359 * 239.99746 * 2 1 3 13 13 C 1.34802 * 116.99638 * 89.99992 * 12 2 1 14 14 O 1.21541 * 120.00149 * 0.02562 * 13 12 2 15 15 C 1.47114 * 119.99587 * 179.97438 * 13 12 2 16 16 C 1.38511 * 120.60362 * 359.72990 * 15 13 12 17 17 C 1.41765 * 118.69815 * 179.76198 * 16 15 13 18 18 C 1.40323 * 120.19326 * 180.28503 * 17 16 15 19 19 C 1.36494 * 119.87153 * 180.29197 * 18 17 16 20 20 C 1.38817 * 120.47126 * 359.95590 * 19 18 17 21 21 C 1.37861 * 120.63928 * 0.02562 * 20 19 18 22 22 C 1.39077 * 119.99288 * 0.02562 * 21 20 19 23 23 O 1.35019 * 119.86698 * 179.97438 * 22 21 20 24 24 C 1.34331 * 121.44528 * 179.97438 * 23 22 21 25 25 O 1.21666 * 119.92791 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 28 28 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 29 29 H 0.96999 * 120.00100 * 180.02562 * 7 6 4 30 30 H 1.07998 * 120.64590 * 359.97438 * 16 15 13 31 31 H 1.08001 * 120.06900 * 0.27278 * 18 17 16 32 32 H 1.07998 * 119.75883 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.68003 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.00225 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7123 12 8 2.0141 -0.6845 -1.1855 13 6 2.2181 0.0672 -2.2857 14 8 1.9978 1.2621 -2.2547 15 6 2.7084 -0.5586 -3.5235 16 6 2.9698 -1.9180 -3.5707 17 6 3.4361 -2.4798 -4.7859 18 6 3.7050 -3.8544 -4.8706 19 6 4.1594 -4.3873 -6.0422 20 6 4.3572 -3.5790 -7.1532 21 6 4.0991 -2.2261 -7.0928 22 6 3.6364 -1.6588 -5.9103 23 8 3.3850 -0.3334 -5.8538 24 6 2.9368 0.2475 -4.7285 25 8 2.7188 1.4443 -4.7085 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7094 1.1618 3.4844 30 1 2.8179 -2.5384 -2.6998 31 1 3.5531 -4.4895 -4.0104 32 1 4.3662 -5.4454 -6.1051 33 1 4.7168 -4.0142 -8.0740 34 1 4.2563 -1.6069 -7.9636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263290148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -132.868679 kcal Electronic energy + Delta-G solvation = -21868.587816 eV Core-core repulsion = 18310.741437 eV Total energy + Delta-G solvation = -3557.846378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.04558 -41.19169 -40.01516 -38.46175 -37.46578 -35.99284 -35.24343 -32.11609 -31.67910 -31.02573 -27.48320 -26.57052 -25.59261 -24.41603 -23.48723 -22.06412 -20.62901 -19.57459 -18.76953 -18.50288 -18.08163 -18.00067 -17.08061 -16.76196 -16.54068 -16.36037 -15.96866 -15.66026 -14.91354 -14.76258 -14.68642 -14.28193 -14.25249 -13.94252 -13.39963 -13.19286 -13.03101 -12.86009 -12.83446 -12.44051 -12.39714 -12.13979 -11.84156 -11.78938 -11.63001 -11.33561 -11.00978 -10.61505 -9.87155 -9.59512 -8.28459 -6.46567 -1.28720 -0.01182 0.48867 0.95579 1.01612 1.43494 1.46384 1.57843 1.85854 1.96029 2.40152 2.66834 2.77395 3.02709 3.24703 3.28607 3.70241 3.99101 4.18290 4.23105 4.37442 4.41733 4.48518 4.56494 4.76480 4.79814 4.89799 4.99111 5.09075 5.26864 5.36385 5.45987 5.57314 5.63347 5.86211 5.94151 6.01520 6.17106 6.58607 6.86661 7.24781 8.79967 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.023038 B = 0.004029 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.075700 B = 6947.213437 C = 7883.287346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.001 0.999 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.989 3.011 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.255 1.255 12 O -0.348 6.348 13 C 0.503 3.497 14 O -0.542 6.542 15 C -0.301 4.301 16 C 0.123 3.877 17 C -0.194 4.194 18 C -0.027 4.027 19 C -0.139 4.139 20 C -0.023 4.023 21 C -0.152 4.152 22 C 0.133 3.867 23 O -0.267 6.267 24 C 0.527 3.473 25 O -0.483 6.483 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.016 0.984 29 H 0.271 0.729 30 H 0.190 0.810 31 H 0.174 0.826 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.181 -18.980 -19.299 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.019 0.981 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.812 3.188 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.179 1.179 12 O -0.265 6.265 13 C 0.349 3.651 14 O -0.434 6.434 15 C -0.304 4.304 16 C 0.105 3.895 17 C -0.194 4.194 18 C -0.045 4.045 19 C -0.157 4.157 20 C -0.040 4.040 21 C -0.170 4.170 22 C 0.089 3.911 23 O -0.178 6.178 24 C 0.375 3.625 25 O -0.370 6.370 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.207 0.793 31 H 0.191 0.809 32 H 0.195 0.805 33 H 0.201 0.799 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.928 -17.805 -19.264 27.404 hybrid contribution -0.221 1.047 1.108 1.540 sum 7.707 -16.759 -18.156 25.882 Atomic orbital electron populations 1.22002 0.96662 1.00772 1.00606 1.20445 0.92146 0.92139 0.78813 0.98069 1.21292 1.33548 1.14111 0.89311 0.90464 1.25935 0.94644 0.95668 1.02413 1.70045 1.36658 1.23840 1.25301 0.85090 0.77882 0.79160 0.76704 1.19991 1.20272 1.17853 1.86464 1.76771 1.42624 1.20658 1.20756 0.74786 0.84993 0.84539 1.90840 1.49771 1.17830 1.84922 1.21090 1.20255 0.96308 0.92790 1.23042 0.76948 0.91617 0.97918 1.18377 1.11447 0.97207 0.92415 1.21616 0.91685 0.90389 1.00791 1.21510 0.99505 1.02929 0.91730 1.21907 0.90944 0.90567 1.00626 1.21040 1.03377 0.97180 0.95383 1.20006 0.96043 0.78520 0.96544 1.83666 1.71326 1.24403 1.38450 1.19928 0.75041 0.86784 0.80791 1.91001 1.48842 1.15045 1.82125 0.92714 0.89930 0.96487 0.91994 0.79264 0.80906 0.80506 0.79932 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.66 9.33 71.98 0.67 -6.99 16 2 C 0.22 12.44 2.56 29.85 0.08 12.52 16 3 H 0.00 0.10 7.16 -2.39 -0.02 0.08 16 4 C -0.55 -30.87 8.90 25.60 0.23 -30.64 16 5 H 0.08 4.13 7.81 -2.91 -0.02 4.11 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 8 Si 0.99 42.41 29.54 68.60 2.03 44.44 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 12 O -0.35 -17.30 9.15 -57.14 -0.52 -17.82 16 13 C 0.50 24.70 7.87 70.15 0.55 25.25 16 14 O -0.54 -31.72 14.72 26.41 0.39 -31.34 16 15 C -0.30 -11.33 6.05 -18.65 -0.11 -11.45 16 16 C 0.12 3.08 9.45 23.21 0.22 3.30 16 17 C -0.19 -3.57 5.74 -21.31 -0.12 -3.69 16 18 C -0.03 -0.24 9.72 22.37 0.22 -0.02 16 19 C -0.14 -0.54 9.97 22.00 0.22 -0.32 16 20 C -0.02 -0.10 10.02 22.32 0.22 0.12 16 21 C -0.15 -1.81 9.98 22.38 0.22 -1.58 16 22 C 0.13 2.78 6.75 23.06 0.16 2.94 16 23 O -0.27 -8.10 9.80 13.64 0.13 -7.97 16 24 C 0.53 20.78 8.13 70.05 0.57 21.35 16 25 O -0.48 -23.71 16.30 26.03 0.42 -23.29 16 26 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.08 4.73 6.07 -2.39 -0.01 4.71 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.19 3.87 7.65 -2.91 -0.02 3.84 16 31 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 32 H 0.18 -0.53 8.06 -2.91 -0.02 -0.55 16 33 H 0.18 -0.59 8.06 -2.91 -0.02 -0.61 16 34 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -85.24 307.43 7.40 -77.83 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: 1.14 Total: -0.06 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 3.57 Total: 11.94 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.24 Total: -53.73 kcal Atomic # 8 Polarization: -80.84 SS G_CDS: 0.42 Total: -80.42 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -85.24 7.40 -77.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263290148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.037 kcal (2) G-P(sol) polarization free energy of solvation -85.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds