Wall clock time and date at job start Tue Mar 31 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 119.99938 * 2 1 4 4 O 1.21866 * 119.99763 * 185.35135 * 3 2 1 5 5 C 1.41111 * 119.99950 * 5.35311 * 3 2 1 6 6 H 1.08001 * 120.00047 * 5.22704 * 5 3 2 7 7 C 1.40093 * 119.99946 * 185.22621 * 5 3 2 8 8 N 1.30656 * 120.00094 * 354.92520 * 7 5 3 9 9 Si 1.86804 * 119.99990 * 174.92215 * 7 5 3 10 10 H 1.48500 * 109.47009 * 94.99947 * 9 7 5 11 11 H 1.48499 * 109.47282 * 214.99596 * 9 7 5 12 12 H 1.48494 * 109.47228 * 335.00315 * 9 7 5 13 13 C 1.38788 * 119.99928 * 179.97438 * 2 1 3 14 14 C 1.39483 * 119.93875 * 294.58715 * 13 2 1 15 15 C 1.36553 * 120.06598 * 179.97438 * 14 13 2 16 16 C 1.40015 * 119.93386 * 359.97438 * 15 14 13 17 17 C 1.47393 * 120.06519 * 179.97438 * 16 15 14 18 18 N 1.30580 * 125.45012 * 359.96842 * 17 16 15 19 19 C 1.30933 * 117.07792 * 179.77042 * 18 17 16 20 20 C 1.34350 * 115.79055 * 0.47042 * 19 18 17 21 21 S 1.76167 * 125.45512 * 179.97438 * 17 16 15 22 22 C 1.40013 * 119.87770 * 0.24665 * 16 15 14 23 23 C 1.36556 * 119.93297 * 359.51363 * 22 16 15 24 24 H 1.09000 * 109.47020 * 269.99584 * 1 2 3 25 25 H 1.08997 * 109.47568 * 30.00173 * 1 2 3 26 26 H 1.09000 * 109.47148 * 150.00061 * 1 2 3 27 27 H 0.97002 * 120.00423 * 180.02562 * 8 7 5 28 28 H 1.07997 * 119.97335 * 359.97438 * 14 13 2 29 29 H 1.08002 * 120.03623 * 179.97438 * 15 14 13 30 30 H 1.08001 * 122.10445 * 180.26405 * 19 18 17 31 31 H 1.08006 * 125.90822 * 179.84078 * 20 19 18 32 32 H 1.08004 * 120.03868 * 179.72480 * 22 16 15 33 33 H 1.07997 * 119.97254 * 180.22997 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3535 1.1694 -0.0984 5 6 1.4379 2.3866 0.1140 6 1 0.3716 2.3825 0.2859 7 6 2.1250 3.6024 0.0042 8 7 3.4271 3.6095 -0.1043 9 14 1.1798 5.2136 0.0129 10 1 1.1494 5.7623 1.3925 11 1 1.8475 6.1842 -0.8911 12 1 -0.2090 4.9753 -0.4556 13 6 2.1589 -1.2019 0.0005 14 6 2.0714 -2.0558 1.1000 15 6 2.7527 -3.2392 1.1031 16 6 3.5392 -3.5955 0.0009 17 6 4.2761 -4.8720 0.0013 18 7 4.2728 -5.7481 0.9696 19 6 4.9853 -6.8326 0.7946 20 6 5.6512 -6.9129 -0.3695 21 16 5.3026 -5.4598 -1.3042 22 6 3.6288 -2.7344 -1.0995 23 6 2.9415 -1.5544 -1.0991 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 3.9029 4.4514 -0.1800 28 1 1.4643 -1.7807 1.9498 29 1 2.6849 -3.8998 1.9549 30 1 5.0371 -7.6119 1.5405 31 1 6.2863 -7.7291 -0.6809 32 1 4.2383 -3.0046 -1.9492 33 1 3.0073 -0.8915 -1.9491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298996135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:44 Heat of formation + Delta-G solvation = 46.973661 kcal Electronic energy + Delta-G solvation = -19253.867195 eV Core-core repulsion = 16178.864988 eV Total energy + Delta-G solvation = -3075.002207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74323 -39.06145 -37.22126 -34.22069 -32.58333 -31.38447 -30.79628 -28.88634 -26.75670 -25.92158 -24.58120 -22.57415 -22.00140 -19.87729 -19.32103 -18.21004 -16.77048 -16.27616 -15.86588 -15.44830 -14.97804 -14.76010 -14.45379 -14.14527 -13.72155 -13.45252 -13.24062 -12.86940 -12.56843 -12.19212 -11.92669 -11.65342 -11.55026 -11.45558 -11.22966 -11.02355 -10.76363 -10.45069 -10.28690 -9.69051 -9.65949 -9.26291 -8.98401 -8.66783 -8.08913 -7.72560 -7.20340 -6.36477 -4.89317 0.30989 1.30335 1.71166 1.77454 1.88938 2.96513 3.04706 3.12824 3.16284 3.96384 4.11461 4.19556 4.37882 4.41020 5.05006 5.11354 5.22177 5.32654 5.42147 5.65472 5.76566 5.83766 5.92414 6.03581 6.11992 6.24379 6.42619 6.46317 6.65354 6.75690 7.05246 7.12644 7.26338 7.62846 7.73416 8.02230 8.33116 8.82698 9.25174 10.39932 10.62470 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.039280 B = 0.003423 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.659285 B = 8178.862280 C = 8510.014148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.613 5.613 3 C 0.552 3.448 4 O -0.571 6.571 5 C -0.538 4.538 6 H 0.074 0.926 7 C 0.088 3.912 8 N -0.748 5.748 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.262 1.262 13 C 0.221 3.779 14 C -0.148 4.148 15 C -0.052 4.052 16 C -0.076 4.076 17 C 0.147 3.853 18 N -0.482 5.482 19 C 0.047 3.953 20 C -0.272 4.272 21 S 0.078 5.922 22 C -0.078 4.078 23 C -0.115 4.115 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.272 0.728 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.119 0.881 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 -15.031 -1.617 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.346 5.346 3 C 0.363 3.637 4 O -0.454 6.454 5 C -0.573 4.573 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.375 5.375 9 Si 0.734 3.266 10 H -0.196 1.196 11 H -0.202 1.202 12 H -0.186 1.186 13 C 0.125 3.875 14 C -0.168 4.168 15 C -0.075 4.075 16 C -0.081 4.081 17 C -0.126 4.126 18 N -0.195 5.195 19 C -0.106 4.106 20 C -0.411 4.411 21 S 0.335 5.665 22 C -0.099 4.099 23 C -0.135 4.135 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.189 0.811 31 H 0.192 0.808 32 H 0.137 0.863 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.254 -14.451 -2.240 14.626 hybrid contribution -0.293 0.000 0.663 0.725 sum -0.547 -14.451 -1.577 14.547 Atomic orbital electron populations 1.21487 0.80547 1.01713 1.00348 1.45882 1.05741 1.03912 1.79075 1.16903 0.87223 0.81587 0.78026 1.90709 1.13861 1.85561 1.55274 1.20001 0.95961 0.89909 1.51461 0.90806 1.25793 0.94576 1.00655 0.92466 1.70043 1.07703 1.27587 1.32167 0.86309 0.80444 0.81038 0.78784 1.19616 1.20228 1.18597 1.18018 0.91704 0.86524 0.91260 1.21103 1.02488 0.95403 0.97845 1.20754 0.94151 0.95819 0.96733 1.17752 1.01863 0.91141 0.97350 1.26003 0.98229 0.97448 0.90939 1.66556 1.21983 1.02729 1.28262 1.21722 0.95579 0.96202 0.97118 1.27097 1.10722 1.03626 0.99652 1.84977 1.44488 1.14167 1.22905 1.20718 0.98551 0.93938 0.96672 1.21057 0.98396 0.95493 0.98587 0.94373 0.90281 0.93500 0.91737 0.85625 0.85206 0.81104 0.80796 0.86299 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 9.80 59.85 0.59 2.39 16 2 N -0.61 -13.77 2.90 -124.16 -0.36 -14.13 16 3 C 0.55 15.27 7.29 -15.17 -0.11 15.16 16 4 O -0.57 -18.05 14.35 5.04 0.07 -17.98 16 5 C -0.54 -14.45 8.43 -37.80 -0.32 -14.77 16 6 H 0.07 1.79 6.14 -52.49 -0.32 1.46 16 7 C 0.09 2.34 5.49 -17.36 -0.10 2.25 16 8 N -0.75 -21.53 11.73 55.55 0.65 -20.88 16 9 Si 0.91 19.11 29.56 -169.99 -5.03 14.09 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 13 C 0.22 4.55 4.87 -83.78 -0.41 4.15 16 14 C -0.15 -2.66 9.76 -39.73 -0.39 -3.05 16 15 C -0.05 -0.87 9.63 -39.52 -0.38 -1.25 16 16 C -0.08 -1.26 5.89 -104.84 -0.62 -1.88 16 17 C 0.15 2.22 7.33 -14.36 -0.11 2.12 16 18 N -0.48 -7.14 10.12 -11.37 -0.12 -7.26 16 19 C 0.05 0.55 11.27 -19.31 -0.22 0.33 16 20 C -0.27 -2.86 11.38 29.36 0.33 -2.52 16 21 S 0.08 0.96 22.38 -107.50 -2.41 -1.44 16 22 C -0.08 -1.31 9.55 -39.52 -0.38 -1.68 16 23 C -0.12 -2.26 9.13 -39.72 -0.36 -2.62 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.41 6.42 -51.93 -0.33 1.08 16 26 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 27 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 28 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.13 1.95 7.81 -52.49 -0.41 1.54 16 30 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.12 1.72 7.29 -52.48 -0.38 1.33 16 33 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -33.23 306.56 -8.14 -41.37 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.11 Total: 2.99 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.46 Total: -1.38 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.18 Total: -42.27 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.07 Total: -17.98 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.09 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.41 Total: -1.44 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.23 -8.14 -41.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298996135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.342 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds