Wall clock time and date at job start Tue Mar 31 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34773 * 119.99938 * 2 1 4 4 O 1.21866 * 119.99763 * 185.35135 * 3 2 1 5 5 C 1.41111 * 119.99950 * 5.35311 * 3 2 1 6 6 H 1.08001 * 120.00047 * 5.22704 * 5 3 2 7 7 C 1.40093 * 119.99946 * 185.22621 * 5 3 2 8 8 N 1.30656 * 120.00094 * 354.92520 * 7 5 3 9 9 Si 1.86804 * 119.99990 * 174.92215 * 7 5 3 10 10 H 1.48500 * 109.47009 * 94.99947 * 9 7 5 11 11 H 1.48499 * 109.47282 * 214.99596 * 9 7 5 12 12 H 1.48494 * 109.47228 * 335.00315 * 9 7 5 13 13 C 1.38788 * 119.99928 * 179.97438 * 2 1 3 14 14 C 1.39483 * 119.93875 * 294.58715 * 13 2 1 15 15 C 1.36553 * 120.06598 * 179.97438 * 14 13 2 16 16 C 1.40015 * 119.93386 * 359.97438 * 15 14 13 17 17 C 1.47393 * 120.06519 * 179.97438 * 16 15 14 18 18 N 1.30580 * 125.45012 * 359.96842 * 17 16 15 19 19 C 1.30933 * 117.07792 * 179.77042 * 18 17 16 20 20 C 1.34350 * 115.79055 * 0.47042 * 19 18 17 21 21 S 1.76167 * 125.45512 * 179.97438 * 17 16 15 22 22 C 1.40013 * 119.87770 * 0.24665 * 16 15 14 23 23 C 1.36556 * 119.93297 * 359.51363 * 22 16 15 24 24 H 1.09000 * 109.47020 * 269.99584 * 1 2 3 25 25 H 1.08997 * 109.47568 * 30.00173 * 1 2 3 26 26 H 1.09000 * 109.47148 * 150.00061 * 1 2 3 27 27 H 0.97002 * 120.00423 * 180.02562 * 8 7 5 28 28 H 1.07997 * 119.97335 * 359.97438 * 14 13 2 29 29 H 1.08002 * 120.03623 * 179.97438 * 15 14 13 30 30 H 1.08001 * 122.10445 * 180.26405 * 19 18 17 31 31 H 1.08006 * 125.90822 * 179.84078 * 20 19 18 32 32 H 1.08004 * 120.03868 * 179.72480 * 22 16 15 33 33 H 1.07997 * 119.97254 * 180.22997 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3535 1.1694 -0.0984 5 6 1.4379 2.3866 0.1140 6 1 0.3716 2.3825 0.2859 7 6 2.1250 3.6024 0.0042 8 7 3.4271 3.6095 -0.1043 9 14 1.1798 5.2136 0.0129 10 1 1.1494 5.7623 1.3925 11 1 1.8475 6.1842 -0.8911 12 1 -0.2090 4.9753 -0.4556 13 6 2.1589 -1.2019 0.0005 14 6 2.0714 -2.0558 1.1000 15 6 2.7527 -3.2392 1.1031 16 6 3.5392 -3.5955 0.0009 17 6 4.2761 -4.8720 0.0013 18 7 4.2728 -5.7481 0.9696 19 6 4.9853 -6.8326 0.7946 20 6 5.6512 -6.9129 -0.3695 21 16 5.3026 -5.4598 -1.3042 22 6 3.6288 -2.7344 -1.0995 23 6 2.9415 -1.5544 -1.0991 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 3.9029 4.4514 -0.1800 28 1 1.4643 -1.7807 1.9498 29 1 2.6849 -3.8998 1.9549 30 1 5.0371 -7.6119 1.5405 31 1 6.2863 -7.7291 -0.6809 32 1 4.2383 -3.0046 -1.9492 33 1 3.0073 -0.8915 -1.9491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298996135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:44 Heat of formation + Delta-G solvation = 25.973134 kcal Electronic energy + Delta-G solvation = -19254.777847 eV Core-core repulsion = 16178.864988 eV Total energy + Delta-G solvation = -3075.912858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.12118 -40.31208 -38.89690 -36.00545 -34.64116 -32.65363 -32.19484 -30.13771 -28.59699 -27.37735 -25.89879 -23.94394 -23.47001 -21.48595 -20.50455 -19.26735 -18.58645 -17.92411 -17.45910 -16.95325 -16.43371 -15.91852 -15.84627 -15.48728 -15.13659 -14.89090 -14.53206 -14.42306 -14.00352 -13.59215 -13.51498 -13.30140 -13.15077 -12.90110 -12.70430 -12.40033 -12.32938 -12.15583 -12.00246 -10.96129 -10.77967 -10.72788 -10.33152 -10.07238 -9.83831 -9.52037 -8.74409 -8.35080 -6.98370 -0.79844 0.30278 0.46197 0.53911 0.76803 1.40344 1.41268 1.58252 1.92147 2.22426 2.39598 2.75012 2.83825 3.05797 3.61659 3.90130 3.93545 4.08906 4.37433 4.38158 4.43336 4.52097 4.58646 4.67567 4.82455 4.98768 5.04612 5.10971 5.28730 5.30965 5.41349 5.56186 5.73300 5.87118 6.06464 6.59679 6.74039 6.78424 7.34609 8.42445 8.62433 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.039280 B = 0.003423 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.659285 B = 8178.862280 C = 8510.014148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.616 5.616 3 C 0.537 3.463 4 O -0.627 6.627 5 C -0.562 4.562 6 H 0.096 0.904 7 C 0.031 3.969 8 N -0.803 5.803 9 Si 0.998 3.002 10 H -0.262 1.262 11 H -0.273 1.273 12 H -0.244 1.244 13 C 0.179 3.821 14 C -0.143 4.143 15 C -0.055 4.055 16 C -0.064 4.064 17 C 0.101 3.899 18 N -0.492 5.492 19 C 0.024 3.976 20 C -0.242 4.242 21 S 0.099 5.901 22 C -0.078 4.078 23 C -0.130 4.130 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.277 0.723 28 H 0.137 0.863 29 H 0.147 0.853 30 H 0.203 0.797 31 H 0.214 0.786 32 H 0.140 0.860 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 -16.910 -1.365 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.348 5.348 3 C 0.348 3.652 4 O -0.514 6.514 5 C -0.597 4.597 6 H 0.114 0.886 7 C -0.187 4.187 8 N -0.432 5.432 9 Si 0.817 3.183 10 H -0.187 1.187 11 H -0.198 1.198 12 H -0.167 1.167 13 C 0.084 3.916 14 C -0.163 4.163 15 C -0.077 4.077 16 C -0.068 4.068 17 C -0.171 4.171 18 N -0.206 5.206 19 C -0.128 4.128 20 C -0.381 4.381 21 S 0.355 5.645 22 C -0.098 4.098 23 C -0.151 4.151 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.219 0.781 31 H 0.230 0.770 32 H 0.157 0.843 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.850 -16.378 -1.981 16.520 hybrid contribution 0.014 0.246 0.559 0.611 sum -0.836 -16.133 -1.422 16.217 Atomic orbital electron populations 1.21672 0.78017 1.02844 1.01710 1.45568 1.07399 1.03386 1.78402 1.17278 0.86837 0.83462 0.77611 1.90646 1.16129 1.86981 1.57662 1.20526 0.97156 0.90383 1.51589 0.88606 1.27068 0.95428 1.05151 0.91023 1.70211 1.10202 1.29102 1.33653 0.84995 0.79259 0.74916 0.79122 1.18712 1.19765 1.16670 1.18247 0.93661 0.86799 0.92863 1.21165 1.02554 0.95351 0.97221 1.20930 0.93840 0.95494 0.97419 1.17941 1.00678 0.91657 0.96554 1.25745 1.00769 0.97667 0.92958 1.66532 1.22145 1.03357 1.28592 1.22229 0.95772 0.96191 0.98576 1.27660 1.09034 1.03124 0.98269 1.84942 1.42975 1.14794 1.21811 1.20825 0.98308 0.92981 0.97726 1.20985 0.99477 0.96423 0.98168 0.92744 0.90699 0.90816 0.91282 0.84509 0.83516 0.78074 0.76958 0.84269 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.51 9.80 127.77 1.25 4.76 16 2 N -0.62 -28.65 2.90 -664.89 -1.93 -30.58 16 3 C 0.54 31.09 7.29 84.95 0.62 31.71 16 4 O -0.63 -42.02 14.35 -4.88 -0.07 -42.09 16 5 C -0.56 -30.88 8.43 23.43 0.20 -30.68 16 6 H 0.10 4.64 6.14 -2.91 -0.02 4.62 16 7 C 0.03 1.69 5.49 85.32 0.47 2.16 16 8 N -0.80 -48.18 11.73 21.84 0.26 -47.92 16 9 Si 1.00 39.36 29.56 68.60 2.03 41.39 16 10 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 11 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 12 H -0.24 -8.79 7.11 99.48 0.71 -8.09 16 13 C 0.18 7.68 4.87 38.64 0.19 7.87 16 14 C -0.14 -5.21 9.76 22.18 0.22 -4.99 16 15 C -0.05 -1.81 9.63 22.31 0.21 -1.59 16 16 C -0.06 -2.11 5.89 -20.01 -0.12 -2.23 16 17 C 0.10 2.91 7.33 87.29 0.64 3.55 16 18 N -0.49 -13.52 10.12 -189.88 -1.92 -15.44 16 19 C 0.02 0.48 11.27 83.94 0.95 1.43 16 20 C -0.24 -4.07 11.38 66.93 0.76 -3.31 16 21 S 0.10 2.19 22.38 -56.49 -1.26 0.93 16 22 C -0.08 -2.67 9.55 22.31 0.21 -2.45 16 23 C -0.13 -5.40 9.13 22.18 0.20 -5.20 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 2.67 6.42 -2.39 -0.02 2.65 16 26 H 0.07 2.17 8.05 -2.39 -0.02 2.15 16 27 H 0.28 14.98 8.29 -92.71 -0.77 14.21 16 28 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 29 H 0.15 4.27 7.81 -2.91 -0.02 4.25 16 30 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.14 4.05 7.29 -2.91 -0.02 4.03 16 33 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -76.45 306.56 4.05 -72.41 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.14 Total: 20.29 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.80 Total: 1.02 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -3.59 Total: -93.95 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.07 Total: -42.09 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.26 Total: 0.93 kcal Total: -76.45 4.05 -72.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298996135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.380 kcal (2) G-P(sol) polarization free energy of solvation -76.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds