Wall clock time and date at job start Tue Mar 31 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99693 * 2 1 4 4 H 1.48502 * 109.46830 * 240.00032 * 3 2 1 5 5 H 1.48499 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46895 * 120.00326 * 3 2 1 7 7 C 1.39925 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99856 * 197.89175 * 7 2 1 9 9 C 1.41404 * 120.00625 * 17.88535 * 7 2 1 10 10 C 1.40791 * 120.20338 * 24.44736 * 9 7 2 11 11 C 1.37649 * 119.89369 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32214 * 359.74770 * 11 10 9 13 13 C 1.39288 * 120.42622 * 0.51231 * 12 11 10 14 14 N 1.39686 * 119.95077 * 179.76465 * 13 12 11 15 15 C 1.46494 * 120.00396 * 359.72275 * 14 13 12 16 16 C 1.50697 * 109.47645 * 179.97438 * 15 14 13 17 17 C 1.38711 * 120.40038 * 89.99810 * 16 15 14 18 18 C 1.38564 * 118.43664 * 180.30009 * 17 16 15 19 19 C 1.38402 * 119.14914 * 359.45780 * 18 17 16 20 20 Cl 1.73593 * 119.63742 * 180.25245 * 19 18 17 21 21 N 1.31947 * 120.72538 * 0.55574 * 19 18 17 22 22 C 1.31906 * 121.70934 * 359.71847 * 21 19 18 23 23 C 1.38320 * 120.09861 * 359.48881 * 13 12 11 24 24 H 0.97001 * 120.00107 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.05005 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.83266 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.78524 * 180.27586 * 12 11 10 28 28 H 0.97006 * 119.99892 * 179.72245 * 14 13 12 29 29 H 1.09002 * 109.46833 * 59.99893 * 15 14 13 30 30 H 1.09003 * 109.46721 * 300.00027 * 15 14 13 31 31 H 1.08002 * 120.78339 * 0.02894 * 17 16 15 32 32 H 1.07997 * 120.42815 * 179.72179 * 18 17 16 33 33 H 1.08004 * 119.61005 * 180.02562 * 22 21 19 34 34 H 1.07992 * 120.16315 * 180.23903 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0488 -1.2345 0.2868 9 6 1.3523 -2.4067 -0.3771 10 6 0.2217 -2.3605 -1.2148 11 6 -0.4120 -3.5276 -1.5770 12 6 0.0604 -4.7490 -1.1255 13 6 1.1746 -4.8099 -0.2919 14 7 1.6395 -6.0466 0.1615 15 6 0.9518 -7.2779 -0.2347 16 6 1.6474 -8.4632 0.3833 17 6 1.2641 -8.9294 1.6322 18 6 1.9356 -10.0181 2.1648 19 6 2.9520 -10.6072 1.4330 20 17 3.7974 -11.9759 2.0852 21 7 3.2894 -10.1361 0.2475 22 6 2.6751 -9.0983 -0.2867 23 6 1.8248 -3.6480 0.0830 24 1 -0.4850 0.8400 0.0004 25 1 -0.1479 -1.4108 -1.5727 26 1 -1.2789 -3.4910 -2.2200 27 1 -0.4408 -5.6596 -1.4187 28 1 2.4178 -6.0901 0.7389 29 1 0.9709 -7.3713 -1.3206 30 1 -0.0821 -7.2431 0.1088 31 1 0.4639 -8.4523 2.1786 32 1 1.6666 -10.4048 3.1366 33 1 2.9787 -8.7411 -1.2597 34 1 2.6911 -3.6943 0.7261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308409079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:15 Heat of formation + Delta-G solvation = 45.507203 kcal Electronic energy + Delta-G solvation = -18632.796115 eV Core-core repulsion = 15555.686611 eV Total energy + Delta-G solvation = -3077.109504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57060 -37.89520 -36.94572 -35.40508 -33.51748 -32.64152 -31.49212 -29.78449 -28.00491 -25.43842 -25.12497 -24.06249 -22.31726 -20.75407 -20.11135 -17.70451 -17.40248 -17.00681 -16.02994 -15.50508 -14.88847 -14.82219 -14.55914 -14.19447 -13.83671 -13.55491 -13.42449 -12.95428 -12.65731 -12.16949 -11.93406 -11.83619 -11.64587 -11.53719 -11.15483 -11.07239 -10.63633 -10.45660 -10.24459 -9.88690 -9.83810 -9.35884 -9.25096 -9.14892 -8.79564 -7.42042 -6.73649 -6.28888 -4.33658 0.57514 0.87683 1.53163 2.85076 3.08068 3.10962 3.19701 3.29186 3.33830 3.95278 4.16566 4.28652 4.49924 4.59151 4.65417 4.69507 4.82082 5.24539 5.55089 5.59008 5.73243 5.80729 6.03138 6.20603 6.28300 6.49166 6.97302 7.00513 7.09375 7.30318 7.33643 7.41917 7.72336 7.87242 8.10995 8.20747 8.46283 8.53428 8.75102 8.97165 9.08106 10.22450 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033777 B = 0.002711 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.773976 B =10326.015046 C =10790.914448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.141 3.859 10 C -0.198 4.198 11 C -0.075 4.075 12 C -0.302 4.302 13 C 0.223 3.777 14 N -0.760 5.760 15 C 0.180 3.820 16 C -0.142 4.142 17 C -0.045 4.045 18 C -0.156 4.156 19 C 0.173 3.827 20 Cl -0.036 7.036 21 N -0.480 5.480 22 C 0.136 3.864 23 C -0.288 4.288 24 H 0.280 0.720 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.389 0.611 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.168 0.832 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 -15.951 2.895 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.093 0.907 9 C 0.138 3.862 10 C -0.218 4.218 11 C -0.094 4.094 12 C -0.325 4.325 13 C 0.125 3.875 14 N -0.394 5.394 15 C 0.055 3.945 16 C -0.145 4.145 17 C -0.072 4.072 18 C -0.177 4.177 19 C 0.008 3.992 20 Cl -0.008 7.008 21 N -0.190 5.190 22 C -0.022 4.022 23 C -0.312 4.312 24 H 0.091 0.909 25 H 0.133 0.867 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.222 0.778 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.185 0.815 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.053 -16.427 2.414 16.730 hybrid contribution 0.036 0.956 0.827 1.264 sum 2.088 -15.471 3.241 15.944 Atomic orbital electron populations 1.69848 1.07554 1.29151 1.35089 1.25892 0.94686 1.01195 0.92229 0.86407 0.80182 0.80389 0.79945 1.18836 1.20387 1.19089 1.19525 0.98074 0.91307 1.40504 0.90653 1.17333 0.90325 0.91263 0.87243 1.21198 1.00463 0.96724 1.03406 1.20439 0.97688 0.92878 0.98411 1.19841 1.03324 0.96524 1.12841 1.17433 0.93156 0.83629 0.93234 1.44392 1.34626 1.02249 1.58173 1.19878 0.95178 0.81058 0.98419 1.21216 0.98340 0.98986 0.95910 1.21635 0.97932 0.93562 0.94062 1.21856 0.96544 0.97564 1.01721 1.21689 0.93392 0.92022 0.92058 1.98405 1.77604 1.41185 1.83585 1.67055 1.28407 1.12716 1.10864 1.22708 0.90665 0.89266 0.99545 1.20387 1.06605 0.91502 1.12673 0.90935 0.86747 0.89599 0.89661 0.77814 0.91678 0.91793 0.83403 0.83639 0.81475 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 10.96 55.55 0.61 -19.90 16 2 C 0.08 1.96 5.14 -17.35 -0.09 1.87 16 3 Si 0.91 18.68 29.60 -169.99 -5.03 13.65 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.37 9.05 -37.75 -0.34 -12.71 16 8 H 0.08 1.93 7.91 -52.48 -0.42 1.52 16 9 C 0.14 3.78 5.57 -106.85 -0.60 3.18 16 10 C -0.20 -5.16 8.70 -38.83 -0.34 -5.49 16 11 C -0.08 -1.76 10.02 -39.69 -0.40 -2.15 16 12 C -0.30 -6.57 9.32 -39.09 -0.36 -6.93 16 13 C 0.22 4.79 6.64 -83.86 -0.56 4.23 16 14 N -0.76 -12.59 5.72 -59.86 -0.34 -12.93 16 15 C 0.18 2.34 5.06 -5.20 -0.03 2.32 16 16 C -0.14 -1.57 5.27 -104.48 -0.55 -2.12 16 17 C -0.05 -0.45 9.86 -39.29 -0.39 -0.83 16 18 C -0.16 -1.47 9.88 -39.40 -0.39 -1.86 16 19 C 0.17 1.94 7.27 -17.44 -0.13 1.82 16 20 Cl -0.04 -0.37 29.11 -51.86 -1.51 -1.88 16 21 N -0.48 -6.01 10.34 -10.36 -0.11 -6.12 16 22 C 0.14 1.54 10.86 -17.56 -0.19 1.35 16 23 C -0.29 -6.99 9.63 -38.67 -0.37 -7.36 16 24 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 25 H 0.11 3.09 6.15 -52.48 -0.32 2.76 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.09 1.63 6.70 -52.49 -0.35 1.28 16 28 H 0.39 6.08 8.47 -40.82 -0.35 5.74 16 29 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 30 H 0.06 0.83 7.91 -51.93 -0.41 0.42 16 31 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.17 1.66 8.06 -52.48 -0.42 1.23 16 34 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -28.41 312.90 -9.90 -38.31 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -3.50 Total: 8.84 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -4.73 Total: -24.70 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.16 Total: -38.95 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.51 Total: -1.88 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.41 -9.90 -38.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308409079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.816 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds