Wall clock time and date at job start Tue Mar 31 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99693 * 2 1 4 4 H 1.48502 * 109.46830 * 240.00032 * 3 2 1 5 5 H 1.48499 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46895 * 120.00326 * 3 2 1 7 7 C 1.39925 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99856 * 197.89175 * 7 2 1 9 9 C 1.41404 * 120.00625 * 17.88535 * 7 2 1 10 10 C 1.40791 * 120.20338 * 24.44736 * 9 7 2 11 11 C 1.37649 * 119.89369 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32214 * 359.74770 * 11 10 9 13 13 C 1.39288 * 120.42622 * 0.51231 * 12 11 10 14 14 N 1.39686 * 119.95077 * 179.76465 * 13 12 11 15 15 C 1.46494 * 120.00396 * 359.72275 * 14 13 12 16 16 C 1.50697 * 109.47645 * 179.97438 * 15 14 13 17 17 C 1.38711 * 120.40038 * 89.99810 * 16 15 14 18 18 C 1.38564 * 118.43664 * 180.30009 * 17 16 15 19 19 C 1.38402 * 119.14914 * 359.45780 * 18 17 16 20 20 Cl 1.73593 * 119.63742 * 180.25245 * 19 18 17 21 21 N 1.31947 * 120.72538 * 0.55574 * 19 18 17 22 22 C 1.31906 * 121.70934 * 359.71847 * 21 19 18 23 23 C 1.38320 * 120.09861 * 359.48881 * 13 12 11 24 24 H 0.97001 * 120.00107 * 359.97438 * 1 2 3 25 25 H 1.08006 * 120.05005 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.83266 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.78524 * 180.27586 * 12 11 10 28 28 H 0.97006 * 119.99892 * 179.72245 * 14 13 12 29 29 H 1.09002 * 109.46833 * 59.99893 * 15 14 13 30 30 H 1.09003 * 109.46721 * 300.00027 * 15 14 13 31 31 H 1.08002 * 120.78339 * 0.02894 * 17 16 15 32 32 H 1.07997 * 120.42815 * 179.72179 * 18 17 16 33 33 H 1.08004 * 119.61005 * 180.02562 * 22 21 19 34 34 H 1.07992 * 120.16315 * 180.23903 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0488 -1.2345 0.2868 9 6 1.3523 -2.4067 -0.3771 10 6 0.2217 -2.3605 -1.2148 11 6 -0.4120 -3.5276 -1.5770 12 6 0.0604 -4.7490 -1.1255 13 6 1.1746 -4.8099 -0.2919 14 7 1.6395 -6.0466 0.1615 15 6 0.9518 -7.2779 -0.2347 16 6 1.6474 -8.4632 0.3833 17 6 1.2641 -8.9294 1.6322 18 6 1.9356 -10.0181 2.1648 19 6 2.9520 -10.6072 1.4330 20 17 3.7974 -11.9759 2.0852 21 7 3.2894 -10.1361 0.2475 22 6 2.6751 -9.0983 -0.2867 23 6 1.8248 -3.6480 0.0830 24 1 -0.4850 0.8400 0.0004 25 1 -0.1479 -1.4108 -1.5727 26 1 -1.2789 -3.4910 -2.2200 27 1 -0.4408 -5.6596 -1.4187 28 1 2.4178 -6.0901 0.7389 29 1 0.9709 -7.3713 -1.3206 30 1 -0.0821 -7.2431 0.1088 31 1 0.4639 -8.4523 2.1786 32 1 1.6666 -10.4048 3.1366 33 1 2.9787 -8.7411 -1.2597 34 1 2.6911 -3.6943 0.7261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308409079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:15 Heat of formation + Delta-G solvation = 30.170161 kcal Electronic energy + Delta-G solvation = -18633.461179 eV Core-core repulsion = 15555.686611 eV Total energy + Delta-G solvation = -3077.774568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.41699 -39.57851 -37.79161 -36.84957 -35.14694 -33.65734 -32.58882 -31.64768 -29.48147 -27.13325 -26.53955 -24.86846 -23.40963 -22.49449 -21.80243 -19.17780 -18.51099 -17.85970 -17.40945 -17.20269 -16.35249 -16.11722 -15.77892 -15.40713 -14.90420 -14.73175 -14.57761 -14.33888 -14.22242 -13.90449 -13.36337 -13.02242 -12.85780 -12.72080 -12.58287 -12.48264 -12.35353 -12.10095 -11.68431 -11.19686 -11.05454 -11.01988 -10.72952 -10.44731 -10.01390 -9.31250 -8.59610 -7.93991 -6.30725 -0.26549 0.08989 0.72974 1.07714 1.36402 1.40143 1.50807 1.61830 2.23350 2.40247 2.82258 3.00259 3.39048 3.59208 3.79174 3.87042 3.88798 3.97738 4.51084 4.52575 4.67435 4.69221 4.77101 4.82944 5.15254 5.16837 5.18569 5.24685 5.40758 5.43507 5.59989 5.94557 6.04262 6.22640 6.33198 6.58483 6.63465 6.90954 7.01463 7.04675 7.24584 8.38371 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033777 B = 0.002711 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.773976 B =10326.015046 C =10790.914448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.112 3.888 10 C -0.233 4.233 11 C -0.076 4.076 12 C -0.299 4.299 13 C 0.236 3.764 14 N -0.750 5.750 15 C 0.181 3.819 16 C -0.144 4.144 17 C -0.041 4.041 18 C -0.149 4.149 19 C 0.159 3.841 20 Cl -0.032 7.032 21 N -0.505 5.505 22 C 0.130 3.870 23 C -0.311 4.311 24 H 0.287 0.713 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.394 0.606 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 -17.226 3.373 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.089 0.911 9 C 0.109 3.891 10 C -0.253 4.253 11 C -0.094 4.094 12 C -0.322 4.322 13 C 0.135 3.865 14 N -0.382 5.382 15 C 0.057 3.943 16 C -0.147 4.147 17 C -0.067 4.067 18 C -0.170 4.170 19 C -0.005 4.005 20 Cl -0.003 7.003 21 N -0.216 5.216 22 C -0.027 4.027 23 C -0.335 4.335 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.228 0.772 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.185 0.815 32 H 0.190 0.810 33 H 0.193 0.807 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.777 -17.761 2.902 18.084 hybrid contribution 0.102 1.111 0.700 1.317 sum 1.879 -16.650 3.603 17.139 Atomic orbital electron populations 1.69907 1.08945 1.30389 1.35646 1.26724 0.95470 1.04369 0.91254 0.85305 0.78840 0.75882 0.79957 1.18616 1.19109 1.18479 1.19775 0.98220 0.92756 1.42661 0.91121 1.17690 0.91091 0.92412 0.87932 1.21126 1.01781 0.97042 1.05389 1.20747 0.97930 0.92688 0.98080 1.20184 1.03068 0.97122 1.11864 1.17449 0.92325 0.84698 0.92005 1.44450 1.34612 1.01902 1.57273 1.19997 0.95361 0.79919 0.99061 1.20998 0.98577 0.98541 0.96573 1.21890 0.98018 0.93336 0.93496 1.22122 0.95444 0.96945 1.02455 1.21990 0.93982 0.92378 0.92103 1.98405 1.77604 1.40930 1.83397 1.67043 1.29307 1.13468 1.11806 1.22864 0.90697 0.89138 1.00006 1.20502 1.07302 0.92110 1.13582 0.90281 0.88745 0.87338 0.86322 0.77224 0.90951 0.90902 0.81503 0.81029 0.80678 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.91 10.96 21.82 0.24 -43.68 16 2 C 0.04 1.90 5.14 85.25 0.44 2.34 16 3 Si 0.98 38.92 29.60 68.60 2.03 40.95 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.50 -27.94 9.05 23.46 0.21 -27.73 16 8 H 0.07 3.79 7.91 -2.91 -0.02 3.77 16 9 C 0.11 6.16 5.57 -21.31 -0.12 6.04 16 10 C -0.23 -12.49 8.70 22.75 0.20 -12.29 16 11 C -0.08 -3.49 10.02 22.20 0.22 -3.27 16 12 C -0.30 -12.40 9.32 22.59 0.21 -12.19 16 13 C 0.24 9.83 6.64 38.16 0.25 10.08 16 14 N -0.75 -23.16 5.72 -343.31 -1.96 -25.13 16 15 C 0.18 4.14 5.06 85.63 0.43 4.58 16 16 C -0.14 -2.81 5.27 -19.78 -0.10 -2.91 16 17 C -0.04 -0.67 9.86 22.46 0.22 -0.45 16 18 C -0.15 -2.39 9.88 22.39 0.22 -2.17 16 19 C 0.16 3.28 7.27 84.71 0.62 3.89 16 20 Cl -0.03 -0.59 29.11 -2.72 -0.08 -0.67 16 21 N -0.51 -11.87 10.34 -186.70 -1.93 -13.80 16 22 C 0.13 2.71 10.86 84.66 0.92 3.63 16 23 C -0.31 -15.30 9.63 22.86 0.22 -15.08 16 24 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 25 H 0.09 5.34 6.15 -2.91 -0.02 5.32 16 26 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.12 4.09 6.70 -2.91 -0.02 4.07 16 28 H 0.39 11.58 8.47 -92.70 -0.79 10.79 16 29 H 0.07 1.61 7.88 -2.39 -0.02 1.59 16 30 H 0.07 1.61 7.91 -2.39 -0.02 1.59 16 31 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 32 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.09 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -62.80 312.90 2.59 -60.21 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.35 Total: 27.64 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 3.94 Total: -45.52 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -3.66 Total: -82.60 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -62.80 2.59 -60.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308409079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.379 kcal (2) G-P(sol) polarization free energy of solvation -62.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds