Wall clock time and date at job start Tue Mar 31 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00438 * 2 1 4 4 H 1.48497 * 109.46952 * 270.00135 * 3 2 1 5 5 H 1.48501 * 109.47144 * 29.99523 * 3 2 1 6 6 H 1.48492 * 109.47469 * 149.99713 * 3 2 1 7 7 C 1.37880 * 119.99336 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99561 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00589 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47438 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00344 * 179.97438 * 10 9 7 12 12 O 1.21368 * 119.99651 * 359.73054 * 11 10 9 13 13 C 1.49326 * 120.00405 * 180.02562 * 11 10 9 14 14 O 1.21399 * 119.99569 * 359.72865 * 13 11 10 15 15 N 1.34777 * 120.00062 * 179.72999 * 13 11 10 16 16 C 1.40485 * 119.99666 * 180.02562 * 15 13 11 17 17 C 1.40339 * 126.11452 * 359.67913 * 16 15 13 18 18 N 1.30822 * 108.20505 * 179.85896 * 17 16 15 19 19 N 1.40059 * 108.36728 * 0.40557 * 18 17 16 20 20 C 1.46504 * 125.99431 * 179.73665 * 19 18 17 21 21 F 1.39905 * 109.46873 * 30.00403 * 20 19 18 22 22 F 1.39897 * 109.47120 * 150.00397 * 20 19 18 23 23 C 1.35227 * 108.01108 * 359.74130 * 19 18 17 24 24 H 0.97005 * 119.99568 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46924 * 59.99419 * 9 7 2 26 26 H 1.08998 * 109.47475 * 299.99955 * 9 7 2 27 27 H 0.97004 * 120.00009 * 0.02562 * 10 9 7 28 28 H 0.96996 * 119.99887 * 359.97438 * 15 13 11 29 29 H 1.07998 * 125.89787 * 0.02932 * 17 16 15 30 30 H 1.08995 * 109.46841 * 270.00572 * 20 19 18 31 31 H 1.07995 * 126.17674 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5604 -5.1051 0.0065 13 6 2.7239 -6.0185 0.0016 14 8 3.9174 -5.7967 -0.0033 15 7 2.2745 -7.2892 0.0077 16 6 3.1875 -8.3570 0.0087 17 6 4.5866 -8.2490 -0.0023 18 7 5.0898 -9.4566 0.0059 19 7 4.0326 -10.3752 0.0130 20 6 4.1601 -11.8346 0.0177 21 9 5.3410 -12.1974 0.6743 22 9 3.0651 -12.3963 0.6831 23 6 2.8735 -9.6787 0.0146 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 3.1566 -3.4356 0.0009 28 1 1.3209 -7.4663 0.0120 29 1 5.1506 -7.3280 -0.0127 30 1 4.1881 -12.2002 -1.0088 31 1 1.8781 -10.0975 0.0200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321360905.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:57 Heat of formation + Delta-G solvation = -76.293751 kcal Electronic energy + Delta-G solvation = -21466.315340 eV Core-core repulsion = 17421.278207 eV Total energy + Delta-G solvation = -4045.037133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.75609 -47.87261 -41.74810 -40.10972 -38.05894 -35.35602 -34.24855 -32.65829 -32.39994 -29.83313 -27.82709 -26.35049 -24.57154 -22.60893 -22.04044 -21.11047 -19.99135 -18.76105 -18.52522 -18.43396 -17.84140 -16.45781 -16.41438 -15.79567 -15.60357 -15.17820 -14.94593 -14.88156 -14.62678 -14.25098 -14.22289 -13.93782 -13.67737 -13.24413 -13.15847 -12.69293 -12.08580 -11.96496 -11.33473 -11.26776 -11.18302 -11.02504 -10.93582 -10.34953 -10.03349 -9.50901 -9.20345 -8.85786 -8.21075 -8.11743 -6.24390 -4.31778 1.10213 1.41315 1.71156 2.57614 2.58005 3.03725 3.22493 3.29002 3.32096 3.59518 3.63470 3.98935 4.02402 4.27409 4.33440 4.71410 5.00892 5.10281 5.12613 5.18573 5.79807 6.16334 6.49021 6.92581 7.04684 7.08708 7.23267 7.33110 7.52568 7.80647 7.84685 8.33721 8.52339 8.79733 9.34703 10.85678 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.052437 B = 0.002616 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.843949 B =10700.057768 C =11179.098806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.246 3.754 10 N -0.669 5.669 11 C 0.494 3.506 12 O -0.536 6.536 13 C 0.512 3.488 14 O -0.512 6.512 15 N -0.621 5.621 16 C 0.021 3.979 17 C 0.072 3.928 18 N -0.264 5.264 19 N -0.440 5.440 20 C 0.519 3.481 21 F -0.173 7.173 22 F -0.182 7.182 23 C 0.030 3.970 24 H 0.267 0.733 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.405 0.595 28 H 0.425 0.575 29 H 0.217 0.783 30 H 0.156 0.844 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 -22.670 -1.468 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.126 3.874 10 N -0.318 5.318 11 C 0.272 3.728 12 O -0.415 6.415 13 C 0.295 3.705 14 O -0.386 6.386 15 N -0.268 5.268 16 C -0.084 4.084 17 C -0.118 4.118 18 N -0.084 5.084 19 N -0.234 5.234 20 C 0.385 3.615 21 F -0.154 7.154 22 F -0.163 7.163 23 C -0.114 4.114 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.240 0.760 28 H 0.262 0.738 29 H 0.233 0.767 30 H 0.173 0.827 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.821 -23.325 -1.424 24.344 hybrid contribution -0.512 1.253 0.203 1.369 sum 6.309 -22.072 -1.221 22.988 Atomic orbital electron populations 1.69968 1.06127 1.27540 1.48621 1.24941 0.94953 0.99544 0.94443 0.86358 0.79666 0.82286 0.78324 1.20367 1.20963 1.19593 1.21201 0.93534 0.90077 1.53700 0.91502 1.19358 0.88130 0.81434 0.98437 1.46420 1.12783 1.04926 1.67660 1.19569 0.87968 0.84438 0.80788 1.90744 1.15723 1.84529 1.50542 1.20819 0.89253 0.83836 0.76563 1.90612 1.16491 1.84391 1.47089 1.42538 1.10075 1.03116 1.71095 1.17815 0.90589 0.86943 1.13021 1.24853 0.92398 0.96716 0.97825 1.77555 1.09712 0.97742 1.23346 1.49393 1.05674 1.05901 1.62467 1.21205 0.71835 0.75069 0.93386 1.93134 1.47793 1.90509 1.84002 1.93131 1.55243 1.83881 1.84090 1.21731 0.92269 0.90481 1.06883 0.92307 0.94674 0.94648 0.75995 0.73755 0.76667 0.82736 0.79591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.55 -14.42 9.28 -34.44 -0.32 -14.74 16 8 H 0.07 1.67 7.60 -52.49 -0.40 1.27 16 9 C 0.25 6.20 5.43 -5.20 -0.03 6.17 16 10 N -0.67 -13.79 5.54 -61.95 -0.34 -14.14 16 11 C 0.49 9.33 7.89 -11.64 -0.09 9.24 16 12 O -0.54 -11.24 16.48 5.48 0.09 -11.15 16 13 C 0.51 8.01 7.86 -11.64 -0.09 7.92 16 14 O -0.51 -8.43 13.63 5.45 0.07 -8.35 16 15 N -0.62 -7.76 5.46 -10.48 -0.06 -7.81 16 16 C 0.02 0.25 6.90 -83.96 -0.58 -0.33 16 17 C 0.07 0.93 10.84 -17.19 -0.19 0.74 16 18 N -0.26 -3.33 12.39 30.72 0.38 -2.95 16 19 N -0.44 -4.32 3.98 -66.44 -0.26 -4.59 16 20 C 0.52 3.41 6.63 59.85 0.40 3.80 16 21 F -0.17 -1.55 17.36 2.25 0.04 -1.51 16 22 F -0.18 -1.24 17.01 2.25 0.04 -1.20 16 23 C 0.03 0.28 11.09 -16.91 -0.19 0.09 16 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.41 7.70 7.79 -40.82 -0.32 7.38 16 28 H 0.42 4.53 8.29 -40.82 -0.34 4.20 16 29 H 0.22 2.89 5.92 -52.49 -0.31 2.58 16 30 H 0.16 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -31.99 297.75 -3.22 -35.20 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -2.19 Total: 6.48 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: -1.18 Total: 14.56 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.45 Total: -53.96 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.16 Total: -19.50 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.99 -3.22 -35.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321360905.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.091 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds