Wall clock time and date at job start Tue Mar 31 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00438 * 2 1 4 4 H 1.48497 * 109.46952 * 270.00135 * 3 2 1 5 5 H 1.48501 * 109.47144 * 29.99523 * 3 2 1 6 6 H 1.48492 * 109.47469 * 149.99713 * 3 2 1 7 7 C 1.37880 * 119.99336 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99561 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00589 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47438 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00344 * 179.97438 * 10 9 7 12 12 O 1.21368 * 119.99651 * 359.73054 * 11 10 9 13 13 C 1.49326 * 120.00405 * 180.02562 * 11 10 9 14 14 O 1.21399 * 119.99569 * 359.72865 * 13 11 10 15 15 N 1.34777 * 120.00062 * 179.72999 * 13 11 10 16 16 C 1.40485 * 119.99666 * 180.02562 * 15 13 11 17 17 C 1.40339 * 126.11452 * 359.67913 * 16 15 13 18 18 N 1.30822 * 108.20505 * 179.85896 * 17 16 15 19 19 N 1.40059 * 108.36728 * 0.40557 * 18 17 16 20 20 C 1.46504 * 125.99431 * 179.73665 * 19 18 17 21 21 F 1.39905 * 109.46873 * 30.00403 * 20 19 18 22 22 F 1.39897 * 109.47120 * 150.00397 * 20 19 18 23 23 C 1.35227 * 108.01108 * 359.74130 * 19 18 17 24 24 H 0.97005 * 119.99568 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46924 * 59.99419 * 9 7 2 26 26 H 1.08998 * 109.47475 * 299.99955 * 9 7 2 27 27 H 0.97004 * 120.00009 * 0.02562 * 10 9 7 28 28 H 0.96996 * 119.99887 * 359.97438 * 15 13 11 29 29 H 1.07998 * 125.89787 * 0.02932 * 17 16 15 30 30 H 1.08995 * 109.46841 * 270.00572 * 20 19 18 31 31 H 1.07995 * 126.17674 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5604 -5.1051 0.0065 13 6 2.7239 -6.0185 0.0016 14 8 3.9174 -5.7967 -0.0033 15 7 2.2745 -7.2892 0.0077 16 6 3.1875 -8.3570 0.0087 17 6 4.5866 -8.2490 -0.0023 18 7 5.0898 -9.4566 0.0059 19 7 4.0326 -10.3752 0.0130 20 6 4.1601 -11.8346 0.0177 21 9 5.3410 -12.1974 0.6743 22 9 3.0651 -12.3963 0.6831 23 6 2.8735 -9.6787 0.0146 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 3.1566 -3.4356 0.0009 28 1 1.3209 -7.4663 0.0120 29 1 5.1506 -7.3280 -0.0127 30 1 4.1881 -12.2002 -1.0088 31 1 1.8781 -10.0975 0.0200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321360905.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:57 Heat of formation + Delta-G solvation = -101.880739 kcal Electronic energy + Delta-G solvation = -21467.424875 eV Core-core repulsion = 17421.278207 eV Total energy + Delta-G solvation = -4046.146668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.30951 -48.44248 -42.67137 -41.42674 -39.51732 -36.70875 -35.83037 -34.33899 -33.47335 -30.76665 -29.68198 -27.23773 -25.98408 -24.22153 -22.97750 -22.17651 -21.33935 -19.98288 -19.45374 -19.04806 -18.50728 -18.22323 -17.59873 -17.09389 -16.91812 -16.78117 -16.09870 -15.96028 -15.67920 -15.20827 -15.19207 -14.87636 -14.78741 -14.53729 -14.07187 -14.04164 -13.88832 -13.27939 -12.99113 -12.72301 -12.65264 -12.20573 -12.19551 -12.16061 -11.51141 -10.87381 -10.82629 -10.69266 -10.02504 -9.09883 -8.30091 -6.45657 0.08555 0.55480 0.74448 1.33396 1.46534 1.46763 1.54940 1.58786 2.24787 2.37401 2.58629 2.72318 3.00914 3.05631 3.45080 3.59818 3.63799 3.90939 4.27553 4.33209 4.79510 5.01325 5.20374 5.29164 5.36386 5.52320 5.56823 5.79895 5.95392 6.27241 6.52925 6.60661 6.78681 7.03417 7.27532 8.81535 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.052437 B = 0.002616 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.843949 B =10700.057768 C =11179.098806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.263 3.737 10 N -0.673 5.673 11 C 0.497 3.503 12 O -0.558 6.558 13 C 0.521 3.479 14 O -0.522 6.522 15 N -0.600 5.600 16 C -0.013 4.013 17 C 0.059 3.941 18 N -0.289 5.289 19 N -0.438 5.438 20 C 0.513 3.487 21 F -0.189 7.189 22 F -0.181 7.181 23 C 0.067 3.933 24 H 0.270 0.730 25 H 0.006 0.994 26 H 0.006 0.994 27 H 0.414 0.586 28 H 0.434 0.566 29 H 0.204 0.796 30 H 0.209 0.791 31 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -24.194 -1.772 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.599 4.599 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.323 5.323 11 C 0.277 3.723 12 O -0.438 6.438 13 C 0.302 3.698 14 O -0.398 6.398 15 N -0.247 5.247 16 C -0.117 4.117 17 C -0.130 4.130 18 N -0.109 5.109 19 N -0.232 5.232 20 C 0.381 3.619 21 F -0.170 7.170 22 F -0.163 7.163 23 C -0.079 4.079 24 H 0.079 0.921 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.250 0.750 28 H 0.274 0.726 29 H 0.220 0.780 30 H 0.225 0.775 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.537 -24.929 -1.726 26.101 hybrid contribution -0.775 1.499 0.311 1.716 sum 6.762 -23.431 -1.415 24.428 Atomic orbital electron populations 1.70100 1.07949 1.28683 1.49647 1.25942 0.95784 1.03508 0.93755 0.85208 0.78482 0.77277 0.78613 1.19603 1.20755 1.18377 1.21581 0.94311 0.90615 1.53373 0.90200 1.18825 0.88323 0.83075 0.95646 1.46135 1.12464 1.04868 1.68793 1.20096 0.88305 0.84754 0.79119 1.90723 1.17070 1.84999 1.50970 1.19929 0.88123 0.83960 0.77744 1.90630 1.16368 1.84550 1.48250 1.42239 1.10759 1.02167 1.69573 1.17918 0.89963 0.87587 1.16268 1.24718 0.93129 0.96691 0.98462 1.77511 1.10936 0.98020 1.24479 1.49832 1.05315 1.07112 1.60900 1.22116 0.71097 0.73325 0.95332 1.93106 1.48880 1.90444 1.84593 1.93137 1.55155 1.83543 1.84434 1.22346 0.93604 0.89342 1.02593 0.92078 0.97594 0.97638 0.74975 0.72629 0.77972 0.77524 0.75483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.77 13.29 21.45 0.28 -53.49 16 2 C 0.01 0.57 5.46 84.65 0.46 1.03 16 3 Si 0.98 41.78 29.54 68.60 2.03 43.81 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.56 -29.93 9.28 25.60 0.24 -29.69 16 8 H 0.08 3.96 7.60 -2.91 -0.02 3.93 16 9 C 0.26 13.74 5.43 85.63 0.46 14.21 16 10 N -0.67 -28.39 5.54 -468.27 -2.59 -30.98 16 11 C 0.50 19.04 7.89 87.23 0.69 19.72 16 12 O -0.56 -23.75 16.48 -3.30 -0.05 -23.81 16 13 C 0.52 16.12 7.86 87.23 0.69 16.80 16 14 O -0.52 -17.18 13.63 -3.40 -0.05 -17.23 16 15 N -0.60 -14.20 5.46 -305.42 -1.67 -15.86 16 16 C -0.01 -0.29 6.90 37.71 0.26 -0.03 16 17 C 0.06 1.48 10.84 85.35 0.93 2.41 16 18 N -0.29 -6.92 12.39 -56.72 -0.70 -7.62 16 19 N -0.44 -7.34 3.98 -364.12 -1.45 -8.79 16 20 C 0.51 4.96 6.63 127.77 0.85 5.81 16 21 F -0.19 -2.96 17.36 44.97 0.78 -2.18 16 22 F -0.18 -1.82 17.01 44.97 0.77 -1.05 16 23 C 0.07 0.99 11.09 83.62 0.93 1.92 16 24 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 25 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.41 15.91 7.79 -92.71 -0.72 15.19 16 28 H 0.43 8.51 8.29 -92.71 -0.77 7.74 16 29 H 0.20 5.55 5.92 -2.91 -0.02 5.53 16 30 H 0.21 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.23 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -70.84 297.75 2.58 -68.26 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -0.26 Total: 16.77 kcal Atomic # 6 Polarization: 26.67 SS G_CDS: 5.50 Total: 32.17 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -6.13 Total: -116.74 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.10 Total: -41.04 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 1.55 Total: -3.24 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -70.84 2.58 -68.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321360905.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.619 kcal (2) G-P(sol) polarization free energy of solvation -70.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds