Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99695 * 2 1 4 4 H 1.48506 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47302 * 299.99683 * 3 2 1 6 6 H 1.48499 * 109.47252 * 60.00265 * 3 2 1 7 7 C 1.37882 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99961 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46919 * 180.02562 * 11 10 9 13 13 C 1.34230 * 116.99836 * 180.02562 * 12 11 10 14 14 O 1.20833 * 119.99930 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00262 * 180.27336 * 13 12 11 16 16 C 1.52996 * 109.47491 * 179.72204 * 15 13 12 17 17 H 1.09002 * 109.40862 * 54.29479 * 16 15 13 18 18 C 1.49580 * 109.41365 * 294.43983 * 16 15 13 19 19 C 1.30203 * 119.24095 * 258.52119 * 18 16 15 20 20 S 1.77801 * 107.53512 * 359.69402 * 19 18 16 21 21 O 1.42098 * 105.57262 * 230.88966 * 20 19 18 22 22 O 1.42102 * 105.61059 * 100.43216 * 20 19 18 23 23 C 1.54946 * 109.41703 * 174.15703 * 16 15 13 24 24 H 0.96998 * 120.00734 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46783 * 60.00512 * 9 7 2 26 26 H 1.08996 * 109.47326 * 300.00280 * 9 7 2 27 27 H 1.08997 * 109.46515 * 60.00029 * 10 9 7 28 28 H 1.09002 * 109.46973 * 300.01023 * 10 9 7 29 29 H 1.08998 * 109.47242 * 60.00031 * 11 10 9 30 30 H 1.09004 * 109.46797 * 299.99847 * 11 10 9 31 31 H 1.09004 * 109.46801 * 299.72165 * 15 13 12 32 32 H 1.09000 * 109.47461 * 59.71633 * 15 13 12 33 33 H 1.07993 * 120.42012 * 78.51688 * 18 16 15 34 34 H 1.08001 * 126.25117 * 179.68939 * 19 18 16 35 35 H 1.08994 * 111.33609 * 212.66639 * 23 16 15 36 36 H 1.09006 * 111.33386 * 337.37332 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 8 2.4240 -6.0907 -0.0031 13 6 1.9109 -7.3311 -0.0042 14 8 0.7130 -7.4894 -0.0042 15 6 2.8289 -8.5262 0.0013 16 6 1.9956 -9.8093 0.0057 17 1 1.2959 -9.7897 -0.8298 18 6 1.2342 -9.9033 1.2898 19 6 1.6702 -10.6895 2.2316 20 16 3.1515 -11.4708 1.6343 21 8 2.9652 -12.8619 1.8564 22 8 4.2269 -10.7519 2.2226 23 6 2.9345 -11.0337 -0.1374 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6047 0.8877 28 1 2.8714 -3.6038 -0.8922 29 1 0.8533 -5.0442 -0.8922 30 1 0.8541 -5.0454 0.8878 31 1 3.4585 -8.5048 -0.8883 32 1 3.4570 -8.4978 0.8916 33 1 0.3332 -9.3260 1.4347 34 1 1.2153 -10.8399 3.1995 35 1 2.4524 -11.8408 -0.6889 36 1 3.8831 -10.7545 -0.5961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321601383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = -145.079460 kcal Electronic energy + Delta-G solvation = -20043.667213 eV Core-core repulsion = 16620.735287 eV Total energy + Delta-G solvation = -3422.931926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70003 -38.36395 -37.40717 -36.42586 -36.26510 -34.07259 -32.17642 -31.67346 -29.27333 -27.06028 -24.53349 -23.24776 -21.38627 -20.55462 -20.24827 -19.26572 -18.02401 -17.53519 -16.91989 -16.64871 -16.31504 -15.86876 -15.60684 -14.86977 -14.69241 -14.51322 -14.29949 -13.69222 -13.42599 -13.00315 -12.75774 -12.49520 -12.43556 -12.32565 -12.23882 -12.03803 -11.92366 -11.10588 -11.03901 -10.95058 -10.72290 -10.69311 -10.55837 -10.50498 -10.45422 -9.80688 -9.57171 -9.20246 -8.43717 -6.08249 -4.11395 -0.37065 0.93273 2.09051 2.20059 2.59220 3.14870 3.27114 3.34759 3.38952 3.55056 3.77757 3.80868 4.14731 4.39530 4.54888 4.68970 4.76343 4.88346 5.00521 5.13885 5.21461 5.27987 5.38734 5.47312 5.50601 5.74235 5.91063 6.36722 6.45913 6.72684 6.90835 7.54437 7.64602 7.69842 7.89892 8.30646 8.95119 9.53336 11.03243 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.046980 B = 0.002456 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.851179 B =11396.651980 C =11581.743158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.068 3.932 12 O -0.354 6.354 13 C 0.459 3.541 14 O -0.512 6.512 15 C -0.122 4.122 16 C -0.074 4.074 17 H 0.130 0.870 18 C -0.039 4.039 19 C -0.669 4.669 20 S 2.440 3.560 21 O -0.936 6.936 22 O -0.928 6.928 23 C -0.575 4.575 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.184 0.816 35 H 0.152 0.848 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 -24.076 -1.080 24.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.148 4.148 11 C -0.005 4.005 12 O -0.270 6.270 13 C 0.302 3.698 14 O -0.401 6.401 15 C -0.159 4.159 16 C -0.093 4.093 17 H 0.148 0.852 18 C -0.059 4.059 19 C -0.776 4.776 20 S 2.621 3.379 21 O -0.933 6.933 22 O -0.925 6.925 23 C -0.704 4.704 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.167 0.833 34 H 0.201 0.799 35 H 0.171 0.829 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.389 -24.445 -0.582 25.039 hybrid contribution -0.691 1.619 -0.323 1.790 sum 4.698 -22.826 -0.906 23.322 Atomic orbital electron populations 1.69968 1.06112 1.26726 1.50578 1.25036 0.94885 0.99431 0.95148 0.86483 0.80097 0.83484 0.77630 1.19640 1.20958 1.20941 1.21203 0.93177 0.90629 1.50968 0.92339 1.19058 0.93825 0.90776 0.97672 1.21782 0.99980 0.90893 1.02101 1.23570 0.91158 0.83488 1.02265 1.86503 1.42750 1.15029 1.82700 1.23247 0.88378 0.85311 0.72839 1.90660 1.16833 1.86927 1.45728 1.21617 0.97844 0.88415 1.08045 1.20588 0.96842 0.92471 0.99432 0.85220 1.23127 0.98791 0.92459 0.91499 1.32700 1.22460 1.13776 1.08661 1.07472 0.76199 0.75361 0.78902 1.93610 1.85795 1.30238 1.83671 1.93665 1.51987 1.73469 1.73375 1.30664 1.09188 1.06836 1.23752 0.92907 0.96248 0.96233 0.92027 0.92064 0.91334 0.91376 0.85570 0.86191 0.83292 0.79871 0.82945 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 11 C 0.07 1.17 5.47 37.15 0.20 1.37 16 12 O -0.35 -5.31 10.22 -39.26 -0.40 -5.71 16 13 C 0.46 5.72 7.71 36.00 0.28 6.00 16 14 O -0.51 -7.41 14.22 -18.76 -0.27 -7.68 16 15 C -0.12 -0.91 5.15 -27.89 -0.14 -1.05 16 16 C -0.07 -0.45 2.34 -91.28 -0.21 -0.67 16 17 H 0.13 0.71 7.93 -51.93 -0.41 0.30 16 18 C -0.04 -0.31 8.45 -36.34 -0.31 -0.61 16 19 C -0.67 -5.13 11.04 29.24 0.32 -4.81 16 20 S 2.44 17.79 6.19 -107.50 -0.66 17.13 16 21 O -0.94 -9.89 18.01 -57.38 -1.03 -10.92 16 22 O -0.93 -9.85 18.02 -57.38 -1.03 -10.89 16 23 C -0.57 -2.00 7.26 38.18 0.28 -1.72 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 30 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 31 H 0.13 0.58 8.06 -51.93 -0.42 0.16 16 32 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.15 1.32 7.16 -52.49 -0.38 0.94 16 34 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.15 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.15 0.16 7.81 -51.93 -0.41 -0.24 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -36.22 323.47 -8.05 -44.27 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -4.96 Total: -4.93 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -0.28 Total: -16.66 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -2.74 Total: -35.20 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 17.79 SS G_CDS: -0.66 Total: 17.13 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.22 -8.05 -44.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321601383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.807 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds