Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99695 * 2 1 4 4 H 1.48506 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47302 * 299.99683 * 3 2 1 6 6 H 1.48499 * 109.47252 * 60.00265 * 3 2 1 7 7 C 1.37882 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99961 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46919 * 180.02562 * 11 10 9 13 13 C 1.34230 * 116.99836 * 180.02562 * 12 11 10 14 14 O 1.20833 * 119.99930 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00262 * 180.27336 * 13 12 11 16 16 C 1.52996 * 109.47491 * 179.72204 * 15 13 12 17 17 H 1.09002 * 109.40862 * 54.29479 * 16 15 13 18 18 C 1.49580 * 109.41365 * 294.43983 * 16 15 13 19 19 C 1.30203 * 119.24095 * 258.52119 * 18 16 15 20 20 S 1.77801 * 107.53512 * 359.69402 * 19 18 16 21 21 O 1.42098 * 105.57262 * 230.88966 * 20 19 18 22 22 O 1.42102 * 105.61059 * 100.43216 * 20 19 18 23 23 C 1.54946 * 109.41703 * 174.15703 * 16 15 13 24 24 H 0.96998 * 120.00734 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46783 * 60.00512 * 9 7 2 26 26 H 1.08996 * 109.47326 * 300.00280 * 9 7 2 27 27 H 1.08997 * 109.46515 * 60.00029 * 10 9 7 28 28 H 1.09002 * 109.46973 * 300.01023 * 10 9 7 29 29 H 1.08998 * 109.47242 * 60.00031 * 11 10 9 30 30 H 1.09004 * 109.46797 * 299.99847 * 11 10 9 31 31 H 1.09004 * 109.46801 * 299.72165 * 15 13 12 32 32 H 1.09000 * 109.47461 * 59.71633 * 15 13 12 33 33 H 1.07993 * 120.42012 * 78.51688 * 18 16 15 34 34 H 1.08001 * 126.25117 * 179.68939 * 19 18 16 35 35 H 1.08994 * 111.33609 * 212.66639 * 23 16 15 36 36 H 1.09006 * 111.33386 * 337.37332 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 8 2.4240 -6.0907 -0.0031 13 6 1.9109 -7.3311 -0.0042 14 8 0.7130 -7.4894 -0.0042 15 6 2.8289 -8.5262 0.0013 16 6 1.9956 -9.8093 0.0057 17 1 1.2959 -9.7897 -0.8298 18 6 1.2342 -9.9033 1.2898 19 6 1.6702 -10.6895 2.2316 20 16 3.1515 -11.4708 1.6343 21 8 2.9652 -12.8619 1.8564 22 8 4.2269 -10.7519 2.2226 23 6 2.9345 -11.0337 -0.1374 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6047 0.8877 28 1 2.8714 -3.6038 -0.8922 29 1 0.8533 -5.0442 -0.8922 30 1 0.8541 -5.0454 0.8878 31 1 3.4585 -8.5048 -0.8883 32 1 3.4570 -8.4978 0.8916 33 1 0.3332 -9.3260 1.4347 34 1 1.2153 -10.8399 3.1995 35 1 2.4524 -11.8408 -0.6889 36 1 3.8831 -10.7545 -0.5961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321601383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = -170.875867 kcal Electronic energy + Delta-G solvation = -20044.785829 eV Core-core repulsion = 16620.735287 eV Total energy + Delta-G solvation = -3424.050543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.70030 -39.09659 -38.09947 -37.49518 -36.94756 -35.94245 -33.73403 -32.63264 -29.99362 -28.72177 -25.57489 -24.61392 -22.30296 -22.17334 -21.03558 -19.86836 -18.88495 -18.56994 -18.27332 -17.74417 -17.56102 -16.66743 -16.50345 -16.30271 -15.88155 -15.46054 -15.03113 -14.66204 -14.44974 -14.10699 -13.76761 -13.69300 -13.58903 -13.31182 -13.11276 -13.04375 -12.85781 -12.68395 -12.51152 -12.36134 -12.08474 -11.85412 -11.67609 -11.53342 -11.41125 -11.32458 -11.18124 -11.10630 -10.58989 -8.23156 -6.34408 -0.89077 0.33072 1.12632 1.41084 1.41367 1.53559 1.56581 1.71902 2.40577 2.62136 3.06371 3.11090 3.27786 3.31725 3.51431 3.80948 3.99868 4.05143 4.16498 4.33533 4.41633 4.48204 4.52830 4.61190 4.76175 4.79585 4.82188 4.89304 5.07488 5.19452 5.43243 5.53954 5.63145 5.79532 6.18365 6.65100 6.82139 7.35399 8.89239 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.046980 B = 0.002456 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.851179 B =11396.651980 C =11581.743158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.096 4.096 11 C 0.078 3.922 12 O -0.358 6.358 13 C 0.454 3.546 14 O -0.536 6.536 15 C -0.119 4.119 16 C -0.076 4.076 17 H 0.145 0.855 18 C -0.046 4.046 19 C -0.680 4.680 20 S 2.441 3.559 21 O -0.976 6.976 22 O -0.968 6.968 23 C -0.530 4.530 24 H 0.264 0.736 25 H -0.002 1.002 26 H -0.005 1.005 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.169 0.831 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 -24.688 -2.722 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.133 4.133 11 C 0.005 3.995 12 O -0.275 6.275 13 C 0.298 3.702 14 O -0.426 6.426 15 C -0.156 4.156 16 C -0.096 4.096 17 H 0.163 0.837 18 C -0.066 4.066 19 C -0.786 4.786 20 S 2.626 3.374 21 O -0.973 6.973 22 O -0.965 6.965 23 C -0.663 4.663 24 H 0.073 0.927 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.186 0.814 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.198 0.802 35 H 0.204 0.796 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 7.196 -25.093 -2.176 26.194 hybrid contribution -1.321 1.764 0.157 2.209 sum 5.875 -23.328 -2.019 24.141 Atomic orbital electron populations 1.70097 1.07871 1.27880 1.51591 1.26005 0.95782 1.03524 0.94635 0.85350 0.79145 0.78518 0.77743 1.18356 1.20351 1.20498 1.21663 0.93755 0.91907 1.50659 0.91693 1.18940 0.94290 0.92536 0.95435 1.21461 0.98731 0.90579 1.02571 1.23114 0.90881 0.83649 1.01885 1.86486 1.42036 1.15649 1.83293 1.24314 0.89007 0.85296 0.71558 1.90661 1.18273 1.86966 1.46729 1.21895 0.97292 0.86038 1.10359 1.20692 0.97364 0.92830 0.98703 0.83700 1.23222 0.98615 0.92091 0.92653 1.32802 1.22867 1.14097 1.08873 1.07334 0.75050 0.74037 0.80985 1.93557 1.86002 1.32317 1.85466 1.93612 1.53244 1.73723 1.75892 1.30585 1.10795 1.06186 1.18776 0.92681 0.98365 0.98635 0.91705 0.91274 0.91497 0.92121 0.81391 0.85481 0.84964 0.80246 0.79607 0.79020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -3.81 5.53 30.59 0.17 -3.64 16 11 C 0.08 2.69 5.47 71.98 0.39 3.08 16 12 O -0.36 -10.20 10.22 -51.41 -0.53 -10.73 16 13 C 0.45 10.43 7.71 71.23 0.55 10.98 16 14 O -0.54 -15.03 14.22 21.94 0.31 -14.72 16 15 C -0.12 -1.34 5.15 29.85 0.15 -1.19 16 16 C -0.08 -0.67 2.34 -11.22 -0.03 -0.69 16 17 H 0.15 0.97 7.93 -2.39 -0.02 0.95 16 18 C -0.05 -0.67 8.45 26.12 0.22 -0.45 16 19 C -0.68 -10.32 11.04 68.61 0.76 -9.57 16 20 S 2.44 32.38 6.19 -56.49 -0.35 32.03 16 21 O -0.98 -20.20 18.01 -127.81 -2.30 -22.50 16 22 O -0.97 -19.82 18.02 -127.81 -2.30 -22.12 16 23 C -0.53 -1.17 7.26 72.65 0.53 -0.64 16 24 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 25 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 26 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 2.30 8.13 -2.39 -0.02 2.28 16 30 H 0.06 2.15 8.13 -2.38 -0.02 2.13 16 31 H 0.17 0.55 8.06 -2.38 -0.02 0.53 16 32 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.13 2.37 7.16 -2.91 -0.02 2.35 16 34 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 35 H 0.19 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.19 -0.88 7.81 -2.38 -0.02 -0.90 16 Total: -1.00 -80.97 323.47 1.80 -79.16 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: 1.07 Total: -0.41 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 3.59 Total: -30.28 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.28 Total: -55.97 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -4.82 Total: -70.07 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 32.38 SS G_CDS: -0.35 Total: 32.03 kcal Total: -80.97 1.80 -79.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321601383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.712 kcal (2) G-P(sol) polarization free energy of solvation -80.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds