Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99921 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99671 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99382 * 3 2 1 7 7 C 1.38798 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00429 * 0.02562 * 7 2 1 9 9 S 1.76209 * 119.99599 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99875 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46774 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46976 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47312 * 179.97438 * 12 11 10 14 14 C 1.34227 * 116.99869 * 180.02562 * 13 12 11 15 15 O 1.20819 * 120.00075 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99646 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47301 * 179.97438 * 16 14 13 18 18 H 1.08997 * 110.61101 * 303.39395 * 17 16 14 19 19 C 1.54262 * 110.68601 * 66.45020 * 17 16 14 20 20 O 1.45589 * 106.36668 * 117.33216 * 19 17 16 21 21 C 1.34528 * 109.64150 * 21.26622 * 20 19 17 22 22 O 1.20818 * 126.43336 * 147.15168 * 21 20 19 23 23 C 1.51792 * 107.13618 * 327.17699 * 21 20 19 24 24 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47385 * 299.99956 * 10 9 7 26 26 H 1.09005 * 109.47046 * 60.00118 * 10 9 7 27 27 H 1.08996 * 109.47558 * 299.99798 * 11 10 9 28 28 H 1.09001 * 109.47131 * 60.00875 * 11 10 9 29 29 H 1.09004 * 109.47273 * 300.00925 * 12 11 10 30 30 H 1.09005 * 109.46779 * 60.00488 * 12 11 10 31 31 H 1.09003 * 109.47486 * 299.99959 * 16 14 13 32 32 H 1.09004 * 109.47197 * 60.00109 * 16 14 13 33 33 H 1.09000 * 110.07524 * 236.55764 * 19 17 16 34 34 H 1.08999 * 110.07579 * 358.05209 * 19 17 16 35 35 H 1.09003 * 110.60712 * 272.11152 * 23 21 20 36 36 H 1.08995 * 110.61218 * 149.13816 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5479 1.4400 -0.7000 6 1 1.4479 2.6526 -0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5956 -3.2364 0.0008 12 6 5.8613 -4.7433 0.0012 13 8 7.2935 -4.9823 0.0005 14 6 7.6976 -6.2622 0.0002 15 8 6.8818 -7.1534 0.0010 16 6 9.1691 -6.5877 0.0001 17 6 9.3556 -8.1063 0.0004 18 1 8.8451 -8.5554 0.8524 19 6 8.8494 -8.7178 -1.3224 20 8 10.0069 -9.3263 -1.9624 21 6 10.9576 -9.5681 -1.0418 22 8 11.7437 -10.4856 -1.0460 23 6 10.8569 -8.4721 0.0036 24 1 -0.4850 0.8401 -0.0004 25 1 3.6432 -3.4319 0.8906 26 1 3.6439 -3.4315 -0.8894 27 1 6.0386 -2.7893 -0.8891 28 1 6.0386 -2.7897 0.8909 29 1 5.4183 -5.1901 0.8913 30 1 5.4183 -5.1905 -0.8887 31 1 9.6348 -6.1643 -0.8899 32 1 9.6349 -6.1646 0.8901 33 1 8.0929 -9.4756 -1.1189 34 1 8.4350 -7.9376 -1.9608 35 1 11.4621 -7.6120 -0.2828 36 1 11.1586 -8.8461 0.9819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328723071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = -186.865732 kcal Electronic energy + Delta-G solvation = -19448.035087 eV Core-core repulsion = 16023.291172 eV Total energy + Delta-G solvation = -3424.743915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60130 -40.59127 -38.06656 -37.06004 -34.81000 -33.72496 -32.50333 -29.88984 -28.11854 -26.52115 -25.63612 -22.66913 -21.88821 -21.54283 -20.66495 -18.11681 -17.81386 -17.45990 -17.20847 -16.84920 -16.78034 -16.58842 -15.27124 -15.06079 -14.85648 -14.31710 -14.09712 -13.79185 -13.54138 -13.25360 -12.91240 -12.87223 -12.60543 -12.53325 -12.14947 -11.77383 -11.62540 -11.33063 -11.16910 -11.05100 -11.00034 -10.95101 -10.65248 -10.48981 -10.31443 -9.87658 -9.07266 -8.67641 -7.04068 -6.34594 -4.08576 1.42370 1.85031 2.25827 2.87494 2.94080 3.25013 3.39455 3.41809 3.48281 3.60220 3.92568 4.04602 4.25122 4.40329 4.59549 4.68167 4.72513 4.83165 4.90762 4.93345 4.99915 5.02653 5.04223 5.15424 5.27506 5.32173 5.57917 5.63838 5.94588 6.21232 6.24010 6.24495 6.46943 6.94173 7.41809 7.88914 8.38010 9.10575 10.74720 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.063147 B = 0.002148 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.303055 B =13031.987730 C =13237.309746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.238 1.238 6 H -0.275 1.275 7 C -0.506 4.506 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.072 3.928 13 O -0.354 6.354 14 C 0.458 3.542 15 O -0.508 6.508 16 C -0.108 4.108 17 C -0.112 4.112 18 H 0.112 0.888 19 C 0.065 3.935 20 O -0.356 6.356 21 C 0.488 3.512 22 O -0.447 6.447 23 C -0.182 4.182 24 H 0.271 0.729 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.067 -13.841 0.706 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.162 1.162 6 H -0.200 1.200 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.140 4.140 12 C -0.002 4.002 13 O -0.270 6.270 14 C 0.301 3.699 15 O -0.397 6.397 16 C -0.146 4.146 17 C -0.131 4.131 18 H 0.130 0.870 19 C -0.009 4.009 20 O -0.274 6.274 21 C 0.328 3.672 22 O -0.329 6.329 23 C -0.221 4.221 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 21.692 -13.580 0.475 25.597 hybrid contribution -1.075 -0.099 0.161 1.092 sum 20.617 -13.679 0.637 24.750 Atomic orbital electron populations 1.69939 1.05911 1.27798 1.47942 1.24801 0.94539 0.99054 0.93282 0.86666 0.81715 0.83191 0.79746 1.19314 1.16162 1.20014 1.22113 0.86899 0.97516 1.58772 0.89289 1.84176 1.11905 1.04174 1.97562 1.22947 0.95918 1.00212 1.04243 1.21337 0.96011 0.92205 1.04442 1.23275 0.75916 0.98127 1.02928 1.86470 1.29079 1.28260 1.83227 1.23515 0.92394 0.81254 0.72722 1.90697 1.55763 1.47899 1.45327 1.21479 0.90358 0.95586 1.07172 1.22262 0.95356 0.95178 1.00280 0.87017 1.24078 0.85163 0.98751 0.92943 1.87124 1.27986 1.75922 1.36393 1.23266 0.79160 0.83873 0.80919 1.90730 1.37999 1.31015 1.73167 1.23120 0.97222 1.00040 1.01669 0.91888 0.91006 0.90961 0.90211 0.90245 0.90863 0.90858 0.86732 0.86360 0.88547 0.87672 0.86082 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.19 13.97 55.49 0.78 -25.41 16 2 C 0.09 2.63 5.50 -17.43 -0.10 2.53 16 3 Si 0.86 20.96 27.74 -169.99 -4.71 16.25 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.24 -5.63 6.74 56.52 0.38 -5.25 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.27 10.04 30.94 0.31 -13.96 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.21 -4.80 19.41 -107.50 -2.09 -6.89 16 10 C -0.08 -1.52 5.67 37.16 0.21 -1.31 16 11 C -0.10 -1.41 5.60 -26.73 -0.15 -1.56 16 12 C 0.07 0.86 5.47 37.16 0.20 1.06 16 13 O -0.35 -3.73 10.22 -39.25 -0.40 -4.13 16 14 C 0.46 3.99 7.49 36.00 0.27 4.26 16 15 O -0.51 -5.70 14.86 -18.74 -0.28 -5.98 16 16 C -0.11 -0.45 5.04 -27.88 -0.14 -0.59 16 17 C -0.11 -0.49 2.75 -89.15 -0.24 -0.74 16 18 H 0.11 0.49 8.04 -51.93 -0.42 0.07 16 19 C 0.06 0.40 6.51 37.82 0.25 0.65 16 20 O -0.36 -3.11 11.07 -39.60 -0.44 -3.55 16 21 C 0.49 4.11 8.57 36.54 0.31 4.43 16 22 O -0.45 -5.42 18.00 -18.28 -0.33 -5.75 16 23 C -0.18 -0.71 6.58 -26.54 -0.17 -0.88 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 26 H 0.07 1.29 8.14 -51.91 -0.42 0.87 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 30 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.62 7.33 -51.93 -0.38 0.24 16 35 H 0.12 0.24 7.82 -51.93 -0.41 -0.17 16 36 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -33.93 326.36 -6.81 -40.74 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -5.01 Total: -4.09 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 0.75 Total: -6.11 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.78 Total: -25.41 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.45 Total: -19.41 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.25 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -2.09 Total: -6.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.93 -6.81 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328723071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.122 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds