Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48501 * 109.47402 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47314 * 300.00252 * 3 2 1 6 6 H 1.48495 * 109.47402 * 60.00664 * 3 2 1 7 7 C 1.37873 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00743 * 164.88449 * 7 2 1 9 9 C 1.50708 * 119.99736 * 344.87723 * 7 2 1 10 10 C 1.53000 * 115.54808 * 324.82220 * 9 7 2 11 11 O 1.45191 * 109.47475 * 306.24064 * 10 9 7 12 12 C 1.34726 * 117.00205 * 183.35440 * 11 10 9 13 13 O 1.21477 * 119.99794 * 4.97438 * 12 11 10 14 14 C 1.47671 * 120.00406 * 184.97276 * 12 11 10 15 15 C 1.41198 * 118.95521 * 358.70307 * 14 12 11 16 16 C 1.35383 * 121.76124 * 179.97438 * 15 14 12 17 17 C 1.45304 * 119.10654 * 359.97438 * 16 15 14 18 18 N 1.30877 * 138.53046 * 180.02562 * 17 16 15 19 19 O 1.21482 * 109.07731 * 179.97438 * 18 17 16 20 20 N 1.21485 * 116.30242 * 359.97438 * 19 18 17 21 21 C 1.31069 * 109.07492 * 359.97438 * 20 19 18 22 22 C 1.37838 * 118.96175 * 178.67946 * 14 12 11 23 23 C 1.52998 * 117.49955 * 110.49347 * 9 7 2 24 24 C 1.52998 * 117.50025 * 179.15512 * 9 7 2 25 25 H 0.96998 * 120.00059 * 5.03053 * 1 2 3 26 26 H 1.09001 * 109.46841 * 186.23709 * 10 9 7 27 27 H 1.09001 * 109.46770 * 66.24338 * 10 9 7 28 28 H 1.08000 * 119.12112 * 359.97438 * 15 14 12 29 29 H 1.07999 * 120.44938 * 179.70436 * 16 15 14 30 30 H 1.07997 * 120.14304 * 0.02562 * 22 14 12 31 31 H 1.08993 * 117.50157 * 215.00675 * 23 9 7 32 32 H 1.09009 * 117.49507 * 0.02783 * 23 9 7 33 33 H 1.09009 * 117.49677 * 359.97438 * 24 9 7 34 34 H 1.08995 * 117.50274 * 144.97282 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0565 -1.2101 -0.2444 9 6 1.2902 -2.4767 0.3394 10 6 0.1969 -2.3611 1.4034 11 8 0.7449 -1.7380 2.5949 12 6 -0.0748 -1.6245 3.6580 13 8 -1.1857 -2.1148 3.6234 14 6 0.3771 -0.9042 4.8653 15 6 1.6825 -0.3669 4.8922 16 6 2.1549 0.3041 5.9691 17 6 1.2951 0.4761 7.1277 18 7 1.3463 1.0271 8.3137 19 8 0.2850 0.8531 8.8785 20 7 -0.5597 0.2374 8.2594 21 6 -0.0762 -0.0916 7.0865 22 6 -0.4890 -0.7773 5.9301 23 6 1.0725 -3.4849 -0.7906 24 6 2.1056 -3.7707 0.3021 25 1 -0.4850 0.8368 -0.0737 26 1 -0.1751 -3.3551 1.6516 27 1 -0.6215 -1.7524 1.0188 28 1 2.3213 -0.4945 4.0308 29 1 3.1588 0.7023 5.9686 30 1 -1.4810 -1.2007 5.8758 31 1 0.1504 -4.0658 -0.7761 32 1 1.4464 -3.2206 -1.7799 33 1 3.1588 -3.6944 0.0313 34 1 1.8635 -4.5396 1.0358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350077121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = 86.563485 kcal Electronic energy + Delta-G solvation = -22121.829415 eV Core-core repulsion = 18605.791080 eV Total energy + Delta-G solvation = -3516.038335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.82211 -40.07875 -38.24164 -36.81570 -35.29274 -34.94118 -33.43480 -32.26225 -31.23141 -27.61304 -25.99933 -25.24617 -25.07467 -21.70061 -21.42776 -21.25051 -19.30930 -19.10454 -19.06049 -18.10359 -17.05669 -16.77304 -15.92791 -15.60613 -14.70473 -14.61186 -14.55629 -14.29524 -13.75676 -13.26442 -12.99028 -12.94023 -12.22417 -12.15546 -11.98883 -11.97829 -11.74011 -11.35662 -11.06590 -10.93196 -10.57812 -10.44254 -10.27527 -10.04171 -9.71045 -9.57995 -9.24861 -8.86048 -8.78463 -8.20644 -6.17974 -4.18330 -0.32485 0.77710 1.65266 2.52587 2.72040 3.11023 3.18183 3.28816 3.31862 3.36744 3.48473 3.52600 4.27605 4.38848 4.57276 4.75687 4.88775 4.99738 5.10354 5.36356 5.46803 5.58396 5.86333 5.93630 5.98633 6.09385 6.21236 6.33142 6.48765 6.56500 6.66693 6.86573 7.15715 7.24136 7.27257 7.79068 8.20665 8.23826 8.31611 8.76075 9.40740 10.85430 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.004861 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.346091 B = 5759.216010 C = 6518.427951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.077 3.923 3 Si 0.890 3.110 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.485 4.485 8 H 0.064 0.936 9 C 0.047 3.953 10 C 0.115 3.885 11 O -0.315 6.315 12 C 0.498 3.502 13 O -0.512 6.512 14 C -0.065 4.065 15 C -0.048 4.048 16 C -0.073 4.073 17 C 0.029 3.971 18 N -0.347 5.347 19 O 0.374 5.626 20 N -0.334 5.334 21 C 0.011 3.989 22 C -0.005 4.005 23 C -0.191 4.191 24 C -0.208 4.208 25 H 0.264 0.736 26 H 0.034 0.966 27 H 0.113 0.887 28 H 0.168 0.832 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -0.129 11.172 11.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.046 3.954 10 C 0.042 3.958 11 O -0.229 6.229 12 C 0.341 3.659 13 O -0.403 6.403 14 C -0.071 4.071 15 C -0.070 4.070 16 C -0.093 4.093 17 C -0.125 4.125 18 N -0.070 5.070 19 O 0.137 5.863 20 N -0.054 5.054 21 C -0.141 4.141 22 C -0.025 4.025 23 C -0.229 4.229 24 C -0.246 4.246 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.130 0.870 28 H 0.186 0.814 29 H 0.173 0.827 30 H 0.179 0.821 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.420 0.228 12.247 12.331 hybrid contribution 0.378 0.486 -0.969 1.148 sum 1.798 0.714 11.278 11.443 Atomic orbital electron populations 1.69827 1.06177 1.27062 1.48705 1.24919 0.94673 0.99155 0.93924 0.86568 0.80450 0.83427 0.77850 1.19446 1.21067 1.20619 1.20430 0.95561 0.89101 1.47096 0.91748 1.18876 0.94459 0.89471 0.92561 1.22907 0.98566 0.94620 0.79661 1.86530 1.42369 1.72245 1.21730 1.20752 0.83379 0.77776 0.83963 1.90797 1.21127 1.45500 1.82925 1.19241 0.94941 1.00079 0.92790 1.21358 0.94391 0.92690 0.98536 1.20893 0.99166 1.00989 0.88295 1.24229 0.95711 0.98492 0.94071 1.75180 1.04437 1.19603 1.07793 1.85396 1.13332 1.49234 1.38385 1.75259 1.14207 1.10136 1.05825 1.22572 0.93067 1.03698 0.94807 1.20212 1.00745 0.94225 0.87306 1.22975 0.98728 1.05933 0.95253 1.22979 0.96739 1.02275 1.02582 0.92631 0.94816 0.86971 0.81419 0.82688 0.82112 0.91436 0.89690 0.90218 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.16 10.97 55.43 0.61 -22.55 16 2 C 0.08 1.94 5.12 -17.82 -0.09 1.85 16 3 Si 0.89 19.67 29.57 -169.99 -5.03 14.64 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.48 -12.24 8.75 -34.44 -0.30 -12.54 16 8 H 0.06 1.63 7.86 -52.49 -0.41 1.21 16 9 C 0.05 1.09 2.10 -155.66 -0.33 0.76 16 10 C 0.12 2.62 4.66 37.16 0.17 2.79 16 11 O -0.31 -6.69 8.99 -40.56 -0.36 -7.05 16 12 C 0.50 9.51 7.87 34.58 0.27 9.78 16 13 O -0.51 -10.71 15.94 -19.25 -0.31 -11.01 16 14 C -0.07 -1.00 5.86 -105.07 -0.62 -1.61 16 15 C -0.05 -0.65 9.45 -39.48 -0.37 -1.02 16 16 C -0.07 -0.86 10.27 -37.79 -0.39 -1.24 16 17 C 0.03 0.38 7.94 -81.25 -0.65 -0.26 16 18 N -0.35 -4.47 12.28 32.76 0.40 -4.07 16 19 O 0.37 4.61 11.67 26.93 0.31 4.92 16 20 N -0.33 -4.44 12.29 31.88 0.39 -4.05 16 21 C 0.01 0.15 7.75 -83.07 -0.64 -0.50 16 22 C 0.00 -0.07 9.60 -38.83 -0.37 -0.44 16 23 C -0.19 -4.03 9.96 -26.69 -0.27 -4.29 16 24 C -0.21 -4.21 9.92 -26.69 -0.26 -4.47 16 25 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 26 H 0.03 0.72 7.96 -51.93 -0.41 0.31 16 27 H 0.11 2.85 6.12 -51.93 -0.32 2.53 16 28 H 0.17 2.22 7.48 -52.49 -0.39 1.83 16 29 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.16 2.15 7.53 -52.49 -0.39 1.76 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.79 8.14 -51.92 -0.42 1.37 16 33 H 0.08 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -27.30 308.16 -6.36 -33.66 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -3.18 Total: 2.06 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.84 Total: -11.20 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 1.40 Total: -30.66 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.36 Total: -13.14 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.30 -6.36 -33.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350077121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.223 kcal (2) G-P(sol) polarization free energy of solvation -27.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds