Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99847 * 2 1 4 4 H 1.48501 * 109.47402 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47314 * 300.00252 * 3 2 1 6 6 H 1.48495 * 109.47402 * 60.00664 * 3 2 1 7 7 C 1.37873 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00743 * 164.88449 * 7 2 1 9 9 C 1.50708 * 119.99736 * 344.87723 * 7 2 1 10 10 C 1.53000 * 115.54808 * 324.82220 * 9 7 2 11 11 O 1.45191 * 109.47475 * 306.24064 * 10 9 7 12 12 C 1.34726 * 117.00205 * 183.35440 * 11 10 9 13 13 O 1.21477 * 119.99794 * 4.97438 * 12 11 10 14 14 C 1.47671 * 120.00406 * 184.97276 * 12 11 10 15 15 C 1.41198 * 118.95521 * 358.70307 * 14 12 11 16 16 C 1.35383 * 121.76124 * 179.97438 * 15 14 12 17 17 C 1.45304 * 119.10654 * 359.97438 * 16 15 14 18 18 N 1.30877 * 138.53046 * 180.02562 * 17 16 15 19 19 O 1.21482 * 109.07731 * 179.97438 * 18 17 16 20 20 N 1.21485 * 116.30242 * 359.97438 * 19 18 17 21 21 C 1.31069 * 109.07492 * 359.97438 * 20 19 18 22 22 C 1.37838 * 118.96175 * 178.67946 * 14 12 11 23 23 C 1.52998 * 117.49955 * 110.49347 * 9 7 2 24 24 C 1.52998 * 117.50025 * 179.15512 * 9 7 2 25 25 H 0.96998 * 120.00059 * 5.03053 * 1 2 3 26 26 H 1.09001 * 109.46841 * 186.23709 * 10 9 7 27 27 H 1.09001 * 109.46770 * 66.24338 * 10 9 7 28 28 H 1.08000 * 119.12112 * 359.97438 * 15 14 12 29 29 H 1.07999 * 120.44938 * 179.70436 * 16 15 14 30 30 H 1.07997 * 120.14304 * 0.02562 * 22 14 12 31 31 H 1.08993 * 117.50157 * 215.00675 * 23 9 7 32 32 H 1.09009 * 117.49507 * 0.02783 * 23 9 7 33 33 H 1.09009 * 117.49677 * 359.97438 * 24 9 7 34 34 H 1.08995 * 117.50274 * 144.97282 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0565 -1.2101 -0.2444 9 6 1.2902 -2.4767 0.3394 10 6 0.1969 -2.3611 1.4034 11 8 0.7449 -1.7380 2.5949 12 6 -0.0748 -1.6245 3.6580 13 8 -1.1857 -2.1148 3.6234 14 6 0.3771 -0.9042 4.8653 15 6 1.6825 -0.3669 4.8922 16 6 2.1549 0.3041 5.9691 17 6 1.2951 0.4761 7.1277 18 7 1.3463 1.0271 8.3137 19 8 0.2850 0.8531 8.8785 20 7 -0.5597 0.2374 8.2594 21 6 -0.0762 -0.0916 7.0865 22 6 -0.4890 -0.7773 5.9301 23 6 1.0725 -3.4849 -0.7906 24 6 2.1056 -3.7707 0.3021 25 1 -0.4850 0.8368 -0.0737 26 1 -0.1751 -3.3551 1.6516 27 1 -0.6215 -1.7524 1.0188 28 1 2.3213 -0.4945 4.0308 29 1 3.1588 0.7023 5.9686 30 1 -1.4810 -1.2007 5.8758 31 1 0.1504 -4.0658 -0.7761 32 1 1.4464 -3.2206 -1.7799 33 1 3.1588 -3.6944 0.0313 34 1 1.8635 -4.5396 1.0358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350077121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = 73.469353 kcal Electronic energy + Delta-G solvation = -22122.397219 eV Core-core repulsion = 18605.791080 eV Total energy + Delta-G solvation = -3516.606139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.87955 -41.55720 -39.47849 -38.45517 -36.91943 -36.01522 -34.52821 -34.15873 -32.31275 -29.10271 -27.65695 -26.89144 -26.14260 -23.13344 -22.82193 -22.47866 -21.10351 -20.33237 -20.15700 -19.20353 -18.59134 -18.25528 -17.51833 -17.27594 -16.49907 -15.81030 -15.68077 -15.56977 -15.22636 -14.83091 -14.25514 -14.04525 -13.82995 -13.71977 -13.50121 -13.04369 -13.03907 -12.83650 -12.77380 -12.42550 -12.26786 -12.10919 -11.86405 -11.45725 -11.30479 -11.13403 -11.08260 -10.62317 -10.03105 -9.83073 -8.07691 -6.13505 -1.41129 -0.32070 0.58002 1.23470 1.43063 1.47143 1.49088 1.58549 1.98152 2.21088 2.25212 2.45299 2.47537 3.02436 3.30935 3.41535 3.57158 3.69218 3.90961 3.98195 4.21044 4.28365 4.39386 4.54262 4.59725 4.73968 4.83917 4.94263 4.95818 5.00443 5.19673 5.21194 5.40442 5.54864 5.63166 5.85063 6.36772 6.69321 6.85373 7.20259 7.47622 8.94173 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.004861 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.346091 B = 5759.216010 C = 6518.427951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.037 3.963 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.496 4.496 8 H 0.059 0.941 9 C 0.011 3.989 10 C 0.124 3.876 11 O -0.323 6.323 12 C 0.496 3.504 13 O -0.538 6.538 14 C -0.074 4.074 15 C -0.059 4.059 16 C -0.049 4.049 17 C 0.025 3.975 18 N -0.345 5.345 19 O 0.392 5.608 20 N -0.336 5.336 21 C -0.002 4.002 22 C 0.004 3.996 23 C -0.189 4.189 24 C -0.184 4.184 25 H 0.260 0.740 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.169 0.831 29 H 0.190 0.810 30 H 0.162 0.838 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 0.285 12.379 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.011 3.989 10 C 0.051 3.949 11 O -0.237 6.237 12 C 0.342 3.658 13 O -0.430 6.430 14 C -0.079 4.079 15 C -0.081 4.081 16 C -0.069 4.069 17 C -0.129 4.129 18 N -0.067 5.067 19 O 0.150 5.850 20 N -0.054 5.054 21 C -0.153 4.153 22 C -0.016 4.016 23 C -0.227 4.227 24 C -0.221 4.221 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.186 0.814 29 H 0.207 0.793 30 H 0.180 0.820 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.880 0.625 13.442 13.762 hybrid contribution -0.095 0.346 -1.251 1.301 sum 2.785 0.971 12.191 12.543 Atomic orbital electron populations 1.69966 1.07315 1.27314 1.49910 1.25519 0.95217 1.01770 0.93836 0.85740 0.79759 0.80086 0.77563 1.18554 1.21497 1.20231 1.20642 0.95391 0.90355 1.46944 0.92293 1.19003 0.95939 0.90067 0.93925 1.22601 0.97691 0.94306 0.80307 1.86524 1.42818 1.72476 1.21850 1.21359 0.82876 0.77300 0.84302 1.90773 1.22110 1.46744 1.83410 1.19045 0.96308 1.01085 0.91506 1.21306 0.93570 0.93797 0.99414 1.21197 1.00040 0.99006 0.86674 1.24454 0.95601 0.98357 0.94480 1.75196 1.04448 1.19445 1.07643 1.85401 1.13095 1.48498 1.37988 1.75265 1.14372 1.09986 1.05731 1.22539 0.93691 1.04254 0.94819 1.20158 1.00562 0.93734 0.87151 1.22978 0.99753 1.05109 0.94857 1.22992 0.96727 1.00493 1.01902 0.93009 0.94103 0.90064 0.81392 0.79290 0.82010 0.90237 0.90119 0.89516 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.51 10.97 21.45 0.24 -48.27 16 2 C 0.04 1.88 5.12 84.65 0.43 2.32 16 3 Si 0.94 40.08 29.57 68.60 2.03 42.11 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.50 -25.00 8.75 25.60 0.22 -24.77 16 8 H 0.06 2.95 7.86 -2.91 -0.02 2.93 16 9 C 0.01 0.51 2.10 -52.93 -0.11 0.40 16 10 C 0.12 5.72 4.66 71.98 0.34 6.06 16 11 O -0.32 -13.81 8.99 -56.36 -0.51 -14.32 16 12 C 0.50 19.17 7.87 70.31 0.55 19.72 16 13 O -0.54 -22.96 15.94 19.91 0.32 -22.65 16 14 C -0.07 -2.24 5.86 -20.15 -0.12 -2.35 16 15 C -0.06 -1.50 9.45 22.34 0.21 -1.29 16 16 C -0.05 -1.01 10.27 23.43 0.24 -0.77 16 17 C 0.03 0.59 7.94 43.84 0.35 0.94 16 18 N -0.35 -7.98 12.28 -54.92 -0.67 -8.66 16 19 O 0.39 8.79 11.67 139.31 1.63 10.42 16 20 N -0.34 -8.32 12.29 -57.38 -0.71 -9.03 16 21 C 0.00 -0.04 7.75 42.57 0.33 0.29 16 22 C 0.00 0.11 9.60 22.76 0.22 0.33 16 23 C -0.19 -7.82 9.96 30.62 0.30 -7.52 16 24 C -0.18 -7.12 9.92 30.62 0.30 -6.82 16 25 H 0.26 13.48 8.32 -92.71 -0.77 12.70 16 26 H 0.04 1.77 7.96 -2.39 -0.02 1.75 16 27 H 0.08 4.26 6.12 -2.39 -0.01 4.24 16 28 H 0.17 4.25 7.48 -2.91 -0.02 4.22 16 29 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.16 4.33 7.53 -2.91 -0.02 4.31 16 31 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 33 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 34 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -57.68 308.16 6.74 -50.94 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.15 Total: 12.92 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 3.27 Total: -13.46 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -1.14 Total: -65.96 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: 1.44 Total: -26.55 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -57.68 6.74 -50.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350077121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.405 kcal (2) G-P(sol) polarization free energy of solvation -57.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds