Wall clock time and date at job start Tue Mar 31 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35000 * 127.27281 * 2 1 4 4 C 1.39502 * 111.68765 * 179.97438 * 3 2 1 5 5 C 1.47655 * 122.10613 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00127 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99508 * 180.02562 * 5 4 3 8 8 C 1.39870 * 119.99675 * 174.89677 * 7 5 4 9 9 C 1.39312 * 119.94712 * 325.53516 * 8 7 5 10 10 C 1.38477 * 120.42179 * 179.76271 * 9 8 7 11 11 C 1.37687 * 120.32814 * 0.51518 * 10 9 8 12 12 C 1.40742 * 119.88505 * 359.74257 * 11 10 9 13 13 C 1.41412 * 120.20642 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99881 * 25.13496 * 13 12 11 15 15 C 1.39932 * 119.99813 * 205.14259 * 13 12 11 16 16 N 1.30832 * 120.00051 * 16.77932 * 15 13 12 17 17 Si 1.86802 * 119.99781 * 196.78831 * 15 13 12 18 18 H 1.48495 * 109.47537 * 59.99525 * 17 15 13 19 19 H 1.48502 * 109.46887 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47088 * 299.99233 * 17 15 13 21 21 C 1.38262 * 119.94877 * 145.81021 * 8 7 5 22 22 N 1.30616 * 115.78499 * 0.02562 * 4 3 2 23 23 S 1.56152 * 109.79972 * 359.97438 * 22 4 3 24 24 H 1.09004 * 109.46614 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47168 * 300.02483 * 1 2 3 26 26 H 1.08996 * 109.47254 * 60.02919 * 1 2 3 27 27 H 1.08003 * 124.15501 * 359.97148 * 3 2 1 28 28 H 0.96992 * 120.00347 * 354.88864 * 7 5 4 29 29 H 1.07998 * 119.78935 * 0.02562 * 9 8 7 30 30 H 1.08004 * 119.83704 * 180.24180 * 10 9 8 31 31 H 1.07999 * 120.05958 * 179.76286 * 11 10 9 32 32 H 0.97000 * 119.99604 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.16277 * 359.96115 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3245 1.0743 0.0000 4 6 3.6683 0.6995 0.0006 5 6 4.7602 1.6934 0.0001 6 8 4.5011 2.8813 -0.0003 7 7 6.0443 1.2837 0.0002 8 6 7.0772 2.2205 -0.1080 9 6 6.9018 3.3623 -0.8866 10 6 7.9160 4.2987 -0.9966 11 6 9.1138 4.1059 -0.3456 12 6 9.3075 2.9545 0.4403 13 6 10.5347 2.7499 1.1124 14 1 11.1548 3.5947 1.3734 15 6 10.9458 1.4528 1.4391 16 7 10.3885 0.4234 0.8549 17 14 12.2901 1.1912 2.7094 18 1 11.8631 1.7701 4.0085 19 1 12.5391 -0.2635 2.8742 20 1 13.5366 1.8589 2.2558 21 6 8.2728 2.0092 0.5535 22 7 3.8996 -0.5860 0.0005 23 16 2.5472 -1.3668 0.0004 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3633 0.5134 -0.8902 27 1 1.9805 2.0981 -0.0004 28 1 6.2520 0.3393 0.0754 29 1 5.9672 3.5203 -1.4043 30 1 7.7684 5.1824 -1.5997 31 1 9.9033 4.8371 -0.4375 32 1 10.6732 -0.4757 1.0816 33 1 8.4112 1.1225 1.1543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460144239.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:07 Heat of formation + Delta-G solvation = 3.850483 kcal Electronic energy + Delta-G solvation = -19177.882034 eV Core-core repulsion = 16101.009866 eV Total energy + Delta-G solvation = -3076.872169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.78399 -40.05852 -38.76180 -36.12137 -35.19686 -34.18579 -31.52259 -30.48386 -29.19559 -27.26042 -26.63845 -23.25869 -22.90850 -21.59788 -21.10876 -19.51363 -19.09392 -18.59313 -17.45688 -16.85126 -16.63839 -16.45995 -15.95439 -15.48472 -14.93800 -14.85366 -14.54069 -14.20811 -14.01267 -13.81881 -13.52783 -13.48791 -13.13184 -12.84813 -12.64475 -12.47164 -12.21914 -11.89190 -11.86644 -11.61600 -11.27310 -11.03890 -10.78058 -10.50501 -9.83823 -9.37358 -8.91131 -8.58067 -6.38170 -0.54902 0.41543 0.50592 0.72244 0.96926 1.05987 1.38809 1.49805 1.54121 2.08366 2.10663 2.21075 2.73821 3.52423 3.68229 3.75820 4.16894 4.26835 4.43258 4.66427 4.68082 4.78646 4.81394 4.88730 5.01992 5.10557 5.13801 5.19885 5.26254 5.34807 5.72138 5.79877 5.98035 6.05224 6.27607 6.47559 6.65038 6.90228 6.92664 7.06781 8.32397 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.003877 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.969521 B = 7220.052888 C = 8198.243310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.231 4.231 3 C -0.162 4.162 4 C 0.037 3.963 5 C 0.579 3.421 6 O -0.546 6.546 7 N -0.646 5.646 8 C 0.145 3.855 9 C -0.240 4.240 10 C -0.080 4.080 11 C -0.245 4.245 12 C 0.093 3.907 13 C -0.497 4.497 14 H 0.080 0.920 15 C 0.036 3.964 16 N -0.823 5.823 17 Si 0.984 3.016 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.258 1.258 21 C -0.201 4.201 22 N -0.561 5.561 23 S 0.540 5.460 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.170 0.830 28 H 0.416 0.584 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.289 0.711 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.757 -7.909 -0.353 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.362 4.362 3 C -0.194 4.194 4 C -0.135 4.135 5 C 0.363 3.637 6 O -0.423 6.423 7 N -0.289 5.289 8 C 0.052 3.948 9 C -0.261 4.261 10 C -0.099 4.099 11 C -0.265 4.265 12 C 0.090 3.910 13 C -0.526 4.526 14 H 0.098 0.902 15 C -0.179 4.179 16 N -0.449 5.449 17 Si 0.805 3.195 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.182 1.182 21 C -0.223 4.223 22 N -0.398 5.398 23 S 0.695 5.305 24 H 0.117 0.883 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.188 0.812 28 H 0.252 0.748 29 H 0.122 0.878 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.099 0.901 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.198 -9.345 -0.400 19.577 hybrid contribution 0.719 1.479 0.402 1.692 sum -16.479 -7.866 0.002 18.260 Atomic orbital electron populations 1.20441 0.82924 1.05317 1.04677 1.26586 1.05132 0.98983 1.05548 1.21251 0.89502 1.03063 1.05547 1.20774 0.94649 0.88915 1.09200 1.17843 0.82144 0.87432 0.76244 1.90761 1.83723 1.17401 1.50443 1.43304 1.04437 1.10675 1.70518 1.17742 0.87910 0.91379 0.97769 1.20476 1.00333 0.97718 1.07597 1.20744 0.92753 0.97901 0.98511 1.21252 0.98423 1.01617 1.05159 1.17762 0.92628 0.91013 0.89553 1.19795 1.04271 0.93957 1.34618 0.90174 1.26771 0.99709 0.94862 0.96589 1.69863 1.39335 1.00504 1.35179 0.85226 0.77835 0.78188 0.78293 1.18720 1.19129 1.18209 1.21010 0.92582 1.03524 1.05198 1.71948 1.32791 1.10623 1.24451 1.80033 0.85183 1.10549 1.54709 0.88338 0.88936 0.88886 0.81227 0.74755 0.87816 0.85721 0.87546 0.90087 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.46 71.23 0.75 0.13 16 2 C -0.23 -3.98 6.58 24.94 0.16 -3.82 16 3 C -0.16 -4.13 9.93 21.83 0.22 -3.91 16 4 C 0.04 1.19 6.66 42.12 0.28 1.47 16 5 C 0.58 24.06 7.54 86.73 0.65 24.71 16 6 O -0.55 -25.39 14.40 -3.98 -0.06 -25.44 16 7 N -0.65 -28.58 5.32 -306.38 -1.63 -30.21 16 8 C 0.14 7.41 6.25 38.12 0.24 7.65 16 9 C -0.24 -12.08 8.66 22.59 0.20 -11.88 16 10 C -0.08 -3.87 10.01 22.20 0.22 -3.65 16 11 C -0.24 -12.63 9.79 22.75 0.22 -12.41 16 12 C 0.09 5.25 5.57 -21.31 -0.12 5.13 16 13 C -0.50 -27.29 9.05 23.46 0.21 -27.07 16 14 H 0.08 4.21 7.90 -2.91 -0.02 4.18 16 15 C 0.04 1.82 5.16 85.25 0.44 2.26 16 16 N -0.82 -43.19 10.94 21.82 0.24 -42.95 16 17 Si 0.98 38.51 29.59 68.60 2.03 40.54 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 20 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 21 C -0.20 -11.11 8.60 22.85 0.20 -10.92 16 22 N -0.56 -16.31 10.71 -75.26 -0.81 -17.12 16 23 S 0.54 9.65 23.20 -56.49 -1.31 8.34 16 24 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 25 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.17 4.23 7.99 -2.91 -0.02 4.21 16 28 H 0.42 17.11 8.29 -92.71 -0.77 16.34 16 29 H 0.10 5.11 6.47 -2.91 -0.02 5.09 16 30 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 31 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 32 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 33 H 0.11 6.23 6.17 -2.91 -0.02 6.21 16 Total: -1.00 -68.68 305.40 2.53 -66.15 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.39 Total: 33.00 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.67 Total: -32.31 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -2.20 Total: -90.28 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.06 Total: -25.44 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Atomic # 16 Polarization: 9.65 SS G_CDS: -1.31 Total: 8.34 kcal Total: -68.68 2.53 -66.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460144239.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.000 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds