Wall clock time and date at job start Tue Mar 31 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 119.99957 * 2 1 4 4 O 1.21629 * 119.99769 * 185.48663 * 3 2 1 5 5 C 1.47346 * 119.99961 * 5.48510 * 3 2 1 6 6 C 1.39275 * 120.28974 * 312.94059 * 5 3 2 7 7 C 1.38179 * 120.08887 * 180.28358 * 6 5 3 8 8 C 1.38848 * 120.68309 * 359.71274 * 7 6 5 9 9 C 1.37574 * 120.58242 * 0.02562 * 8 7 6 10 10 C 1.40718 * 119.88406 * 359.97438 * 9 8 7 11 11 C 1.40853 * 120.33481 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00312 * 149.78562 * 11 10 9 13 13 C 1.40285 * 119.99738 * 329.78141 * 11 10 9 14 14 N 1.30623 * 119.99659 * 335.71285 * 13 11 10 15 15 Si 1.86799 * 119.99789 * 155.71433 * 13 11 10 16 16 H 1.48503 * 109.46997 * 269.99730 * 15 13 11 17 17 H 1.48497 * 109.47450 * 29.99954 * 15 13 11 18 18 H 1.48498 * 109.47188 * 150.00265 * 15 13 11 19 19 C 1.38820 * 119.99673 * 179.97438 * 2 1 3 20 20 N 1.29673 * 124.94348 * 179.70057 * 19 2 1 21 21 C 1.31959 * 116.91621 * 179.77287 * 20 19 2 22 22 C 1.33481 * 114.56768 * 0.51121 * 21 20 19 23 23 S 1.70968 * 124.94774 * 359.97438 * 19 2 1 24 24 H 1.08990 * 109.47006 * 85.03662 * 1 2 3 25 25 H 1.09000 * 109.47224 * 205.03833 * 1 2 3 26 26 H 1.09002 * 109.47135 * 325.03437 * 1 2 3 27 27 H 1.07999 * 119.95273 * 359.97438 * 6 5 3 28 28 H 1.08006 * 119.66026 * 179.74410 * 7 6 5 29 29 H 1.08001 * 119.71018 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.05817 * 180.02562 * 9 8 7 31 31 H 0.96993 * 120.00746 * 354.10825 * 14 13 11 32 32 H 1.08000 * 122.71946 * 180.24132 * 21 20 19 33 33 H 1.07999 * 125.97116 * 179.69737 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3510 1.1696 -0.1007 5 6 1.4072 2.4403 0.1220 6 6 0.2777 2.6788 -0.6571 7 6 -0.4020 3.8765 -0.5435 8 6 0.0251 4.8517 0.3477 9 6 1.1342 4.6434 1.1346 10 6 1.8445 3.4325 1.0387 11 6 2.9810 3.2090 1.8402 12 1 3.2349 2.2059 2.1495 13 6 3.7832 4.2894 2.2366 14 7 3.7959 5.3874 1.5292 15 14 4.8331 4.1577 3.7760 16 1 4.0531 4.6280 4.9489 17 1 5.2334 2.7427 3.9827 18 1 6.0476 4.9979 3.6202 19 6 2.1591 -1.2023 0.0005 20 7 3.4510 -1.3141 -0.0050 21 6 3.9447 -2.5378 0.0012 22 6 3.0265 -3.5067 0.0016 23 16 1.4350 -2.7511 0.0019 24 1 -0.3633 0.0889 -1.0237 25 1 -0.3634 -0.9311 0.4349 26 1 -0.3633 0.8422 0.5889 27 1 -0.0646 1.9285 -1.3544 28 1 -1.2747 4.0558 -1.1541 29 1 -0.5181 5.7821 0.4240 30 1 1.4587 5.4077 1.8253 31 1 3.3188 5.4265 0.6856 32 1 5.0057 -2.7392 0.0013 33 1 3.2246 -4.5683 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464867056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:50 Heat of formation + Delta-G solvation = 46.376807 kcal Electronic energy + Delta-G solvation = -20141.653778 eV Core-core repulsion = 17066.625689 eV Total energy + Delta-G solvation = -3075.028089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.18042 -38.69757 -37.12461 -35.27874 -33.98861 -30.64962 -29.67578 -29.12290 -26.73889 -25.70725 -24.76741 -22.46148 -21.35856 -20.65291 -18.78509 -18.07968 -17.74860 -16.22392 -15.90798 -15.66913 -15.03145 -14.75802 -14.32490 -14.08137 -13.77574 -13.34375 -13.02450 -12.88613 -12.70283 -12.34181 -12.28070 -11.99520 -11.36267 -11.26530 -11.01069 -10.84776 -10.44066 -10.18821 -10.09351 -9.74247 -9.48836 -9.12516 -9.10570 -8.67600 -7.87212 -7.84215 -7.74937 -7.32339 -4.60302 0.99328 1.22935 1.86296 2.24374 2.64833 3.04407 3.14069 3.15365 3.23730 3.34887 3.77811 3.96306 4.44021 4.77480 5.15843 5.26344 5.34299 5.42044 5.52318 5.72898 5.76924 5.86944 6.06743 6.18421 6.30571 6.66231 6.72499 6.87946 7.15248 7.34436 7.42981 7.55022 7.67750 7.73108 7.98655 8.07250 8.19539 8.54709 8.67224 8.91848 9.90922 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.006252 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.345368 B = 4477.475994 C = 5848.813560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.532 5.532 3 C 0.572 3.428 4 O -0.463 6.463 5 C -0.264 4.264 6 C -0.047 4.047 7 C -0.259 4.259 8 C -0.071 4.071 9 C -0.205 4.205 10 C 0.128 3.872 11 C -0.479 4.479 12 H 0.081 0.919 13 C 0.040 3.960 14 N -0.779 5.779 15 Si 1.068 2.932 16 H -0.272 1.272 17 H -0.274 1.274 18 H -0.273 1.273 19 C 0.300 3.700 20 N -0.489 5.489 21 C 0.078 3.922 22 C -0.300 4.300 23 S 0.085 5.915 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.301 0.699 32 H 0.174 0.826 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.295 -11.483 -0.948 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.263 5.263 3 C 0.362 3.638 4 O -0.331 6.331 5 C -0.269 4.269 6 C -0.066 4.066 7 C -0.279 4.279 8 C -0.090 4.090 9 C -0.224 4.224 10 C 0.123 3.877 11 C -0.506 4.506 12 H 0.099 0.901 13 C -0.184 4.184 14 N -0.401 5.401 15 Si 0.891 3.109 16 H -0.198 1.198 17 H -0.198 1.198 18 H -0.198 1.198 19 C -0.068 4.068 20 N -0.211 5.211 21 C -0.073 4.073 22 C -0.440 4.440 23 S 0.333 5.667 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.191 0.809 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.286 -10.309 -0.079 11.586 hybrid contribution -0.307 -1.113 -1.133 1.618 sum -5.593 -11.422 -1.212 12.776 Atomic orbital electron populations 1.22223 0.77286 1.04175 1.03205 1.45744 1.07356 1.02263 1.70970 1.18889 0.87414 0.82258 0.75239 1.90816 1.13591 1.85569 1.43122 1.19142 1.03226 0.96442 1.08091 1.20799 0.93052 0.96341 0.96382 1.20218 1.04220 0.96288 1.07147 1.20749 0.95841 0.97032 0.95335 1.21166 0.97896 0.99509 1.03824 1.17358 0.92033 0.89856 0.88431 1.20715 1.07156 0.97507 1.25224 0.90095 1.27162 0.97363 0.91008 1.02818 1.70346 1.30441 1.27620 1.11656 0.83589 0.76310 0.77306 0.73695 1.19800 1.19841 1.19833 1.24058 0.91096 0.91683 0.99991 1.66639 1.08707 1.24214 1.21491 1.21704 1.01336 0.85379 0.98930 1.26645 0.93410 1.04340 1.19631 1.83652 1.10912 0.98794 1.73347 0.91248 0.91265 0.87940 0.88533 0.88682 0.88746 0.87348 0.88514 0.80900 0.80877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 8.78 59.85 0.53 1.58 16 2 N -0.53 -10.34 3.07 -126.07 -0.39 -10.73 16 3 C 0.57 13.69 6.55 -12.56 -0.08 13.60 16 4 O -0.46 -12.90 14.38 5.25 0.08 -12.82 16 5 C -0.26 -6.27 5.03 -104.37 -0.53 -6.79 16 6 C -0.05 -0.96 7.69 -39.22 -0.30 -1.26 16 7 C -0.26 -5.16 10.03 -39.38 -0.39 -5.56 16 8 C -0.07 -1.50 10.01 -39.60 -0.40 -1.89 16 9 C -0.20 -4.93 7.98 -38.89 -0.31 -5.24 16 10 C 0.13 3.30 5.21 -106.54 -0.56 2.74 16 11 C -0.48 -12.98 7.73 -37.82 -0.29 -13.27 16 12 H 0.08 2.30 7.14 -52.49 -0.37 1.93 16 13 C 0.04 1.04 4.93 -17.30 -0.09 0.95 16 14 N -0.78 -20.59 12.46 55.56 0.69 -19.90 16 15 Si 1.07 22.28 30.00 -169.99 -5.10 17.18 16 16 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 C 0.30 5.60 7.67 -87.49 -0.67 4.93 16 20 N -0.49 -10.01 8.66 -15.16 -0.13 -10.14 16 21 C 0.08 1.22 11.34 -19.16 -0.22 1.00 16 22 C -0.30 -3.82 11.35 29.07 0.33 -3.49 16 23 S 0.08 1.13 21.60 -107.50 -2.32 -1.19 16 24 H 0.07 0.85 7.04 -51.93 -0.37 0.48 16 25 H 0.07 0.80 6.86 -51.93 -0.36 0.45 16 26 H 0.10 1.54 6.13 -51.93 -0.32 1.23 16 27 H 0.10 1.67 6.07 -52.49 -0.32 1.35 16 28 H 0.09 1.63 8.06 -52.48 -0.42 1.20 16 29 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.11 2.67 6.82 -52.49 -0.36 2.31 16 31 H 0.30 8.18 6.83 -40.82 -0.28 7.90 16 32 H 0.17 2.21 8.06 -52.49 -0.42 1.78 16 33 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 294.92 15.07 4.44 4.44 Total: -1.00 -31.56 294.92 -8.56 -40.13 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -2.86 Total: 5.72 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.98 Total: -12.70 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.17 Total: -40.77 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.10 Total: 17.18 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.32 Total: -1.19 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.56 -8.56 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464867056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.504 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds