Wall clock time and date at job start Tue Mar 31 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 119.99957 * 2 1 4 4 O 1.21629 * 119.99769 * 185.48663 * 3 2 1 5 5 C 1.47346 * 119.99961 * 5.48510 * 3 2 1 6 6 C 1.39275 * 120.28974 * 312.94059 * 5 3 2 7 7 C 1.38179 * 120.08887 * 180.28358 * 6 5 3 8 8 C 1.38848 * 120.68309 * 359.71274 * 7 6 5 9 9 C 1.37574 * 120.58242 * 0.02562 * 8 7 6 10 10 C 1.40718 * 119.88406 * 359.97438 * 9 8 7 11 11 C 1.40853 * 120.33481 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00312 * 149.78562 * 11 10 9 13 13 C 1.40285 * 119.99738 * 329.78141 * 11 10 9 14 14 N 1.30623 * 119.99659 * 335.71285 * 13 11 10 15 15 Si 1.86799 * 119.99789 * 155.71433 * 13 11 10 16 16 H 1.48503 * 109.46997 * 269.99730 * 15 13 11 17 17 H 1.48497 * 109.47450 * 29.99954 * 15 13 11 18 18 H 1.48498 * 109.47188 * 150.00265 * 15 13 11 19 19 C 1.38820 * 119.99673 * 179.97438 * 2 1 3 20 20 N 1.29673 * 124.94348 * 179.70057 * 19 2 1 21 21 C 1.31959 * 116.91621 * 179.77287 * 20 19 2 22 22 C 1.33481 * 114.56768 * 0.51121 * 21 20 19 23 23 S 1.70968 * 124.94774 * 359.97438 * 19 2 1 24 24 H 1.08990 * 109.47006 * 85.03662 * 1 2 3 25 25 H 1.09000 * 109.47224 * 205.03833 * 1 2 3 26 26 H 1.09002 * 109.47135 * 325.03437 * 1 2 3 27 27 H 1.07999 * 119.95273 * 359.97438 * 6 5 3 28 28 H 1.08006 * 119.66026 * 179.74410 * 7 6 5 29 29 H 1.08001 * 119.71018 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.05817 * 180.02562 * 9 8 7 31 31 H 0.96993 * 120.00746 * 354.10825 * 14 13 11 32 32 H 1.08000 * 122.71946 * 180.24132 * 21 20 19 33 33 H 1.07999 * 125.97116 * 179.69737 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3510 1.1696 -0.1007 5 6 1.4072 2.4403 0.1220 6 6 0.2777 2.6788 -0.6571 7 6 -0.4020 3.8765 -0.5435 8 6 0.0251 4.8517 0.3477 9 6 1.1342 4.6434 1.1346 10 6 1.8445 3.4325 1.0387 11 6 2.9810 3.2090 1.8402 12 1 3.2349 2.2059 2.1495 13 6 3.7832 4.2894 2.2366 14 7 3.7959 5.3874 1.5292 15 14 4.8331 4.1577 3.7760 16 1 4.0531 4.6280 4.9489 17 1 5.2334 2.7427 3.9827 18 1 6.0476 4.9979 3.6202 19 6 2.1591 -1.2023 0.0005 20 7 3.4510 -1.3141 -0.0050 21 6 3.9447 -2.5378 0.0012 22 6 3.0265 -3.5067 0.0016 23 16 1.4350 -2.7511 0.0019 24 1 -0.3633 0.0889 -1.0237 25 1 -0.3634 -0.9311 0.4349 26 1 -0.3633 0.8422 0.5889 27 1 -0.0646 1.9285 -1.3544 28 1 -1.2747 4.0558 -1.1541 29 1 -0.5181 5.7821 0.4240 30 1 1.4587 5.4077 1.8253 31 1 3.3188 5.4265 0.6856 32 1 5.0057 -2.7392 0.0013 33 1 3.2246 -4.5683 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464867056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:50 Heat of formation + Delta-G solvation = 26.967815 kcal Electronic energy + Delta-G solvation = -20142.495415 eV Core-core repulsion = 17066.625689 eV Total energy + Delta-G solvation = -3075.869726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.68789 -40.17579 -38.82820 -36.88949 -35.80805 -32.25882 -31.43788 -30.50766 -28.04069 -27.40712 -26.32493 -23.99350 -23.05112 -22.19145 -20.32558 -19.60724 -19.30784 -17.74321 -17.36531 -17.14732 -16.71806 -16.17845 -15.93583 -15.64572 -15.30797 -14.70936 -14.51104 -14.42283 -14.19005 -14.09447 -13.80093 -13.52679 -13.10173 -12.73636 -12.54441 -12.36703 -12.11089 -11.93203 -11.49570 -11.41219 -11.06507 -10.97570 -10.26576 -10.20445 -9.66817 -9.58239 -9.28169 -9.08008 -6.56122 -0.25488 0.01846 0.50011 0.72607 0.87076 1.40406 1.55752 1.69000 1.70244 1.82287 2.18513 2.23972 2.59780 3.41817 3.48791 3.94386 4.09971 4.18224 4.41305 4.43847 4.45901 4.57315 4.65216 4.71896 4.88365 5.03176 5.08462 5.31225 5.35847 5.57857 5.69813 5.72410 5.84661 5.97952 6.17678 6.27858 6.67185 6.76964 6.94344 7.25152 7.93215 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.006252 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.345368 B = 4477.475994 C = 5848.813560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.536 5.536 3 C 0.568 3.432 4 O -0.523 6.523 5 C -0.276 4.276 6 C -0.043 4.043 7 C -0.237 4.237 8 C -0.067 4.067 9 C -0.226 4.226 10 C 0.104 3.896 11 C -0.525 4.525 12 H 0.048 0.952 13 C 0.007 3.993 14 N -0.803 5.803 15 Si 1.112 2.888 16 H -0.248 1.248 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.241 3.759 20 N -0.544 5.544 21 C 0.039 3.961 22 C -0.269 4.269 23 S 0.181 5.819 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.284 0.716 32 H 0.189 0.811 33 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 -13.786 -1.828 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.266 5.266 3 C 0.358 3.642 4 O -0.396 6.396 5 C -0.281 4.281 6 C -0.062 4.062 7 C -0.256 4.256 8 C -0.085 4.085 9 C -0.245 4.245 10 C 0.100 3.900 11 C -0.552 4.552 12 H 0.066 0.934 13 C -0.210 4.210 14 N -0.425 5.425 15 Si 0.929 3.071 16 H -0.172 1.172 17 H -0.206 1.206 18 H -0.189 1.189 19 C -0.124 4.124 20 N -0.267 5.267 21 C -0.111 4.111 22 C -0.409 4.409 23 S 0.430 5.570 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.153 0.847 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.205 0.795 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.378 -12.653 -0.965 15.206 hybrid contribution 0.378 -0.704 -1.055 1.324 sum -8.000 -13.356 -2.020 15.699 Atomic orbital electron populations 1.22516 0.74440 1.05422 1.05024 1.45472 1.08922 1.01689 1.70503 1.18962 0.86835 0.83810 0.74580 1.90767 1.15921 1.86854 1.46051 1.19473 1.04138 0.96497 1.07956 1.21188 0.91586 0.97593 0.95798 1.20797 1.04423 0.94845 1.05535 1.21167 0.94514 0.98686 0.94178 1.21125 0.99375 0.98862 1.05172 1.17708 0.92040 0.91336 0.88872 1.20573 1.09455 0.96270 1.28927 0.93419 1.28343 0.97644 0.90397 1.04635 1.70457 1.32060 1.28417 1.11596 0.83077 0.75520 0.76937 0.71558 1.17176 1.20553 1.18897 1.24307 0.91747 0.93431 1.02951 1.66554 1.10939 1.27523 1.21715 1.21971 1.02864 0.84766 1.01482 1.27322 0.92896 1.05990 1.14662 1.83191 1.09338 0.93726 1.70748 0.88532 0.88314 0.88934 0.84730 0.84126 0.85461 0.89001 0.90361 0.79451 0.76427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.74 8.78 127.77 1.12 2.86 16 2 N -0.54 -20.82 3.07 -671.03 -2.06 -22.88 16 3 C 0.57 28.37 6.55 86.64 0.57 28.94 16 4 O -0.52 -31.34 14.38 -4.12 -0.06 -31.40 16 5 C -0.28 -13.40 5.03 -19.70 -0.10 -13.50 16 6 C -0.04 -1.66 7.69 22.51 0.17 -1.49 16 7 C -0.24 -8.54 10.03 22.40 0.22 -8.31 16 8 C -0.07 -2.71 10.01 22.26 0.22 -2.48 16 9 C -0.23 -11.18 7.98 22.72 0.18 -11.00 16 10 C 0.10 5.67 5.21 -21.10 -0.11 5.56 16 11 C -0.52 -30.75 7.73 23.41 0.18 -30.57 16 12 H 0.05 3.00 7.14 -2.91 -0.02 2.98 16 13 C 0.01 0.40 4.93 85.37 0.42 0.82 16 14 N -0.80 -45.21 12.46 21.88 0.27 -44.94 16 15 Si 1.11 47.68 30.00 68.60 2.06 49.74 16 16 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 19 C 0.24 8.94 7.67 179.25 1.37 10.32 16 20 N -0.54 -22.90 8.66 -201.86 -1.75 -24.65 16 21 C 0.04 1.20 11.34 83.60 0.95 2.15 16 22 C -0.27 -5.91 11.35 66.74 0.76 -5.15 16 23 S 0.18 4.21 21.60 -56.49 -1.22 2.99 16 24 H 0.10 1.98 7.04 -2.39 -0.02 1.96 16 25 H 0.10 1.94 6.86 -2.39 -0.02 1.93 16 26 H 0.09 2.61 6.13 -2.39 -0.01 2.60 16 27 H 0.14 4.11 6.07 -2.91 -0.02 4.09 16 28 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 29 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.09 4.77 6.82 -2.91 -0.02 4.75 16 31 H 0.28 16.57 6.83 -92.71 -0.63 15.94 16 32 H 0.19 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.22 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -77.97 294.92 4.49 -73.47 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 1.29 Total: 19.52 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 5.96 Total: -21.86 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -3.54 Total: -92.47 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.06 Total: -31.40 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.06 Total: 49.74 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.22 Total: 2.99 kcal Total: -77.97 4.49 -73.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464867056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.440 kcal (2) G-P(sol) polarization free energy of solvation -77.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds